mRNA_Ecto-sp9_F_contig10852.741.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10852.741.1
Unique NamemRNA_Ecto-sp9_F_contig10852.741.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10852.741.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP54_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.230e-41
Identity = 98/136 (72.06%), Postives = 103/136 (75.74%), Query Frame = 1 
Query:   28 MQATEILLRRLREGGDASITKTGGRGXXXXXXTSTDKGDDD-----GDPGAPQDCFSPIELATLVEVHGYSPEDARRALTICHEMRTLEAAGVGGVAAAQELTRRVLCGTGAVVGGGGGVAGKGELGPRSLQQEQR 420
            MQATEILLRRLR+GG+          XXXXXX              GDPGAPQDCFSPIELATLVEVHGYSPEDARRALTICHEMR LEAAGVG V AAQELTRRVLCGTGAVV G G VAGKGELG R L++ +R
Sbjct:    1 MQATEILLRRLRDGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPGAPQDCFSPIELATLVEVHGYSPEDARRALTICHEMRKLEAAGVGRVTAAQELTRRVLCGTGAVVEGVGEVAGKGELGVRPLRRRKR 136
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BLAST of mRNA_Ecto-sp9_F_contig10852.741.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH95_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.050e-32
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:  205 VEVHGYSPEDARRALTICHEMRTLEAAGVGGVAAAQELTRRVLCGTGAVVGGGGGVAGKGELGPRSL 405
            + VHGYSPEDARRALTICHEMRTLEAAGVGGVAAAQELTRRVLCGTGAVVGGGGGVAG GELG RSL
Sbjct:   12 ITVHGYSPEDARRALTICHEMRTLEAAGVGGVAAAQELTRRVLCGTGAVVGGGGGVAGMGELGARSL 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10852.741.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.230e-4172.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.050e-3294.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10852contigEcto-sp9_F_contig10852:361..4238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004550.1
Exons3
Model size709
Cds size681
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10852.741.1prot_Ecto-sp9_F_contig10852.741.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10852 361..4211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.2870781-CDS-Ecto-sp9_F_contig10852:360..6631622928307.2870781-CDS-Ecto-sp9_F_contig10852:360..663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10852 361..663 -
1692277829.2050805-CDS-Ecto-sp9_F_contig10852:360..6631692277829.2050805-CDS-Ecto-sp9_F_contig10852:360..663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10852 361..663 -
1622928307.305865-CDS-Ecto-sp9_F_contig10852:1090..12851622928307.305865-CDS-Ecto-sp9_F_contig10852:1090..1285Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10852 1091..1285 -
1692277829.2148275-CDS-Ecto-sp9_F_contig10852:1090..12851692277829.2148275-CDS-Ecto-sp9_F_contig10852:1090..1285Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10852 1091..1285 -
1622928307.3210132-CDS-Ecto-sp9_F_contig10852:4028..42111622928307.3210132-CDS-Ecto-sp9_F_contig10852:4028..4211Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10852 4029..4211 -
1692277829.224924-CDS-Ecto-sp9_F_contig10852:4028..42111692277829.224924-CDS-Ecto-sp9_F_contig10852:4028..4211Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10852 4029..4211 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.3313441-UTR-Ecto-sp9_F_contig10852:4211..42381622928307.3313441-UTR-Ecto-sp9_F_contig10852:4211..4238Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10852 4212..4238 -
1692277829.2350998-UTR-Ecto-sp9_F_contig10852:4211..42381692277829.2350998-UTR-Ecto-sp9_F_contig10852:4211..4238Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10852 4212..4238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10852.741.1

>prot_Ecto-sp9_F_contig10852.741.1 ID=prot_Ecto-sp9_F_contig10852.741.1|Name=mRNA_Ecto-sp9_F_contig10852.741.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=227bp
MQATEILLRRLREGGDASITKTGGRGGGGGGVTSTDKGDDDGDPGAPQDC
FSPIELATLVEVHGYSPEDARRALTICHEMRTLEAAGVGGVAAAQELTRR
VLCGTGAVVGGGGGVAGKGELGPRSLQQEQRGDMVSSSGDSGGNTNGVVD
SAASSIGSSSSSGGGIGDQSGAGPSTPLTASAAAAATAAATAAAATAAAA
TAAAVVPPRLVGRKRSHSSTANAAMSP
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mRNA from alignment at Ecto-sp9_F_contig10852:361..4238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10852.741.1 ID=mRNA_Ecto-sp9_F_contig10852.741.1|Name=mRNA_Ecto-sp9_F_contig10852.741.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3878bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10852:361..4238- (Ectocarpus species9 EcSCA_722f female)
TCCCTCCCTCCCTCCCCTCTCCCCGCCATGCAGGCAACCGAGATTTTGCT
GAGGCGTCTCCGTGAGGGGGGTGACGCCAGCATCACCAAGACCGGCGGCA
GGGGCGGCGGCGGCGGTGGAGTCACTAGCACCGATAAGGGTGATGATGAT
GGCGACCCGGGGGCTCCGCAGGATTGCTTCTCTCCCATCGAGCTGGCCAC
CCTTGTGGAGGTGAGTCTGCTTTCCCTTTTCCCTTGAAGGTGGAGAAAGT
TTTTACCCTCTCTCTCCATTGGAATGCGTGTGGGTCTTCCTTTCTTCTGT
TTCTTTTTGGCTGTAAGATAATTTCTCTCTCCATCTCTCCATGTGTAAAC
AACGCGGTGTAGTTTCTTCTTATAGTCATGCGGGTTACCGTGGGTTTCAT
GGGGGTTGCCGTATGTTTCATGCGGGTCACCATATATATTTCATGCGGGT
TACCATATATGTTTCATGCGGGTTCCCGTGTGTTTCATGCGGGTTACCAT
ATGTTTCATGCGGGTTACCGTATGTTTCATGCGGGTTACCATATTCTTCA
TGCGGGTTACCGTATGTTTCATGCGGGTTACCGTCAAATACCACCCCACG
ACGAAGAGGGGTGTCGGAGTCAAATGACGAGTTTTCGGAAAGCTCTCGAC
GAGACGGTTTCCACTAGAACGCTCGGCACCCGTCACTGCTGGGCAGTTCT
GCCCAAAAGGTGTGGTATCATCCGTATGCACACTCCCGTAAGCACCGGAG
AGATTGCACCCCCGTGTTATTCAGGGTTTTTGTTTAGCGTATTTCTCCAC
AACCCTAAATAACACCAACCGATGCCTATCGGGAAGAAGCCCTCGACGAG
TTGTTTTCCAAAACTACATACATAGCCTTTTCGTTCGATAGTGATAAGGC
AGTGCCCCCCTGGTTGTGAAGAAATATGCTTATATGTTCATCCATCTCGC
AATCGGAGCAAGGCGGATCCCACTCGCAGTCTTGCGTATCTCGTCGTGGC
TCGGTGCCGGAGCCAGGCTCGAAGTCTCTAGGTGTCCGCCCGCCCCTTCT
CCGAAGCGGGATCAGGACGAGGTCCATACAACGATCAACACAACAGATCG
TTGTTGCTGTTGTGTTGTTATCGCTGTGTGTTCCTCGTCCTGATCCCGCT
TGGAGAGAGGCGGGCGGATACCTATTTAGAGATTTCGAGCCTGGCTCCGG
CAGCGAGCAACGAGGAGGCACGGAAGAAAGCGAGTGTGGATCCGCCTTGC
TCTGACTGCGAAGAGGGATGAAGCTAACACGGGAGTGCCACCTCTCCGAC
ATTACGGTATACTGCTGTTGTCTTTTCTTTCAGTGTACCAGTTTTTTTTC
CGGACTTTGGGTTTAGTGTTCCAACTGCTGTCTGCTTTCCCCGGCGACTT
GCATTGAAACGGTGTGTTGTGGGCTTGACCTGCTGACGTAAATGTTTTGT
TGGTCTCGATCGTTTTTGGTTATTCTCTGTTCTGCAGACACTCATGCGGC
GTGGTTTGCCTTTGTGGGCGACATACCGTTAAAGGGCGGAGAGATGGCAC
CCCCCCTAGACCGACTTTCACAGCTCGATTGCTCCACGACCAAGATTATC
TGTACCGTACCGTATACCGTACCGTGGTATTCCGTAAGAGTCGGAGGGAT
GACACCCCCCCTAGACCGAATTTCAAAGCTCGATTGCTCCGCGACCAAGA
TTATCTGTACCGTACCGTATACCGTACCGTGGTATTCCGTAAGAGGCGGA
GAGATAGCACCTCCCCTAGACCTACTTTCAAAGCTCGATTGCTCCACGAC
CAAGTGGTGCGGAAAGAGCCCGGCAGGTCTAGGGAAAGCCGTTGACAAGA
TAGATGTTTCCATACCACAACTGTTGGTGTTGTGCAGCAATCGAAGCTTG
GTTGTGGAGCAATCGATCTTCAACAGTCGGTCTAGGGGGGTGCTATATCT
CTCTCTCTCTCCGACTCTTACGGAACGCCACGGTACGGTATACGGTACGG
TACAGATAAGCTTGGTTGTGTAGCAATCGAGCTTTCAAAATCGACCCCGG
GGGGGGGGGGGCTCCTCTGCACCTCTTACGGTATGTCTGTTTTGCCGGCA
TGCGCCAGGCCAACACATCGCCACTCTGTATGCAGAGTGCGACACGATAA
CTACAGCTTTGTGTCTGTGTGATTATAATTCAAAGCATATTGGTCCCAAG
TGTTCCGCCCAAAGCCAATACGTGTAAGTACAATTTAGGGATTATACGAT
TTACTCTTATCCTACATTTTTCAACAGTGTCGCATGAGGCCGAGCGCACT
CAAGCGGGCACCGGGACCAATGAGAGCCCACGAATTGTTGATTAACCCCT
CATCCCTCCATAAACTTTTTTCAACGCATGGAGCAGTTGAAGGTCACTCC
TCGTATCCTCCCATAGGACACATCAAACCGAACCGTTGAACCTTGTACGT
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCTT
CTCTTCCCCTTTGCACCCGCCCGCCCCCCATCCCCCCCCCCCCCACCCCC
CCCCCCAACCCACACCCANNNNNNNNNNCTACTCAATCCCCCCCCTCCTC
CCTCCCCTTTCCCACCCACCCACCCCCCCTCTTCCCCCCTTTCCTCCCCC
CCCCCCCCCCCCCATCCCCACCCCGCTTTTCCCTGCCTCTTTTTTTGGGT
TCGTTAGGTGACGCACTGAACCGTTAAACCTCACACATATCCCCCCATTC
AACACATCGAACCGTTGAACCTCGTTCGAGCCCCCACTCCCCTATCCCCA
CCCCGCTGTTCCCCGCCTTTGTTTTTGGGTCCGTTAGTGACACATCGAAC
CGTTGAATCTCACACTCATCACACCATTTACCACATCTAACGTTGAAGCT
CATGCGCACCCCTCCCGCCCGTTTTTTCCCCGCGGCCCTCTTGGCGTTGT
CAGGTCCACGGCTACTCCCCCGAGGACGCCAGGAGAGCTCTGACGATCTG
CCACGAGATGAGGACGTTGGAAGCGGCGGGGGTCGGAGGGGTGGCCGCGG
CGCAGGAGCTGACCAGACGCGTGCTGTGCGGGACGGGGGCGGTGGTTGGA
GGGGGGGGGGGTGTCGCTGGGAAGGGAGAGCTTGGACCTCGCTCTTTGGT
GAGAATAGTCGACATTGCTGTTGTTGTTGCTGCTGCTGCTGCTGGTGTAG
CGGGTTGGTGTTGGTGAGTAATGTTCAGAAATAGCGATGCTACAGGGCTA
CCATGCAGTCACACGCTGTTGGGCATAGTTGAGCTAGCCGACGATCTGTC
CTGTGTGTATGAACAGCCTTGGCTTGTTGCATCGCGTAACCCAGACGGAA
TACTCGAGCTGTGTCATACTCTGAACAGCAGTGCCGAGTTCTCGGTGGAA
AAAGGCCGGCCACATCCGTAGGCGCTATGCGGCCTTCCCCTTACACACCG
ACCACTACTGCTGTACTGCAATATTTGCCATCAAAGGACACCGCTTGTGC
ATGTTTACCCACTTTCTTCTTCGCTTATTTTGTGACGCGGCTCGTGTCAT
CTCTCTTGTCTTGTAAACATAACAGCAGCAGGAACAGCGGGGTGATATGG
TGAGCAGCAGCGGCGACAGCGGCGGTAACACCAACGGCGTAGTAGACAGC
GCAGCTAGCTCTATAGGAAGCAGCAGCAGCAGTGGCGGCGGAATCGGCGA
CCAATCAGGCGCCGGCCCATCCACCCCGCTGACGGCATCGGCAGCAGCAG
CAGCAACAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCTACA
GCTGCAGCAGTGGTACCGCCCCGACTAGTCGGTCGGAAGCGGTCGCACTC
GAGCACCGCCAACGCCGCCATGTCTCCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10852:361..4238-

>mRNA_Ecto-sp9_F_contig10852.741.1 ID=mRNA_Ecto-sp9_F_contig10852.741.1|Name=mRNA_Ecto-sp9_F_contig10852.741.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1362bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10852:361..4238- (Ectocarpus species9 EcSCA_722f female)
ATGCAGGCAACCGAGATTTTGCTGAGGCGTCTCCGTGAGGGGGGTGACGC
CAGCATCACCAAGACCGGCGGCAGGGGCGGCGGCGGCGGTGGAGTCACTA
GCACCGATAAGGGTGATGATGATGGCGACCCGGGGGCTCCGCAGGATTGC
TTCTCTCCCATCGAGCTGGCCACCCTTGTGGAGATGCAGGCAACCGAGAT
TTTGCTGAGGCGTCTCCGTGAGGGGGGTGACGCCAGCATCACCAAGACCG
GCGGCAGGGGCGGCGGCGGCGGTGGAGTCACTAGCACCGATAAGGGTGAT
GATGATGGCGACCCGGGGGCTCCGCAGGATTGCTTCTCTCCCATCGAGCT
GGCCACCCTTGTGGAGGTCCACGGCTACTCCCCCGAGGACGCCAGGAGAG
CTCTGACGATCTGCCACGAGATGAGGACGTTGGAAGCGGCGGGGGTCGGA
GGGGTGGCCGCGGCGCAGGAGCTGACCAGACGCGTGCTGTGCGGGACGGG
GGCGGTGGTTGGAGGGGGGGGGGGTGTCGCTGGGAAGGGAGAGCTTGGAC
CTCGCTCTTTGGTCCACGGCTACTCCCCCGAGGACGCCAGGAGAGCTCTG
ACGATCTGCCACGAGATGAGGACGTTGGAAGCGGCGGGGGTCGGAGGGGT
GGCCGCGGCGCAGGAGCTGACCAGACGCGTGCTGTGCGGGACGGGGGCGG
TGGTTGGAGGGGGGGGGGGTGTCGCTGGGAAGGGAGAGCTTGGACCTCGC
TCTTTGCAGCAGGAACAGCGGGGTGATATGGTGAGCAGCAGCGGCGACAG
CGGCGGTAACACCAACGGCGTAGTAGACAGCGCAGCTAGCTCTATAGGAA
GCAGCAGCAGCAGTGGCGGCGGAATCGGCGACCAATCAGGCGCCGGCCCA
TCCACCCCGCTGACGGCATCGGCAGCAGCAGCAGCAACAGCAGCAGCTAC
AGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCTGCAGCAGTGGTACCGC
CCCGACTAGTCGGTCGGAAGCGGTCGCACTCGAGCACCGCCAACGCCGCC
ATGTCTCCCCAGCAGGAACAGCGGGGTGATATGGTGAGCAGCAGCGGCGA
CAGCGGCGGTAACACCAACGGCGTAGTAGACAGCGCAGCTAGCTCTATAG
GAAGCAGCAGCAGCAGTGGCGGCGGAATCGGCGACCAATCAGGCGCCGGC
CCATCCACCCCGCTGACGGCATCGGCAGCAGCAGCAGCAACAGCAGCAGC
TACAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCTGCAGCAGTGGTAC
CGCCCCGACTAGTCGGTCGGAAGCGGTCGCACTCGAGCACCGCCAACGCC
GCCATGTCTCCC
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