mRNA_Ecto-sp9_F_contig10850.740.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE) HSP 1 Score: 156 bits (395), Expect = 7.250e-43 Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = 1
Query: 277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAAL 633
+SAAG AS V+KRKNF EKEEVIRHLL SK+GVL GA+KAA E+FGC W+T RLW++YD Q K+GVS+P L + R G G+KGVPI+ELR RLR+IPLNDRTTQRRLAAAL
Sbjct: 1 MSAAGSASQVAKRKNFNNSEKEEVIRHLLT---GSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAAL 116
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE) HSP 1 Score: 140 bits (354), Expect = 2.950e-37 Identity = 69/120 (57.50%), Postives = 92/120 (76.67%), Query Frame = 1
Query: 277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG 636
+SAAG AS +KRKNF LE+EEVIRHLL +S+DGVLR GAY+ A E++GC WKTI +W K++Q+ +G + + + RKG G+KG+ +++LR RLR+IPLN+RTTQRRLAAALG
Sbjct: 1 MSAAGSASQGTKRKNFNALEREEVIRHLLA---NSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALG 117
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE) HSP 1 Score: 139 bits (351), Expect = 6.440e-37 Identity = 71/119 (59.66%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAAL 633
+ AAG AS V+KRKNF E EEVIR+LL SK+GVLR GA+K AGE+FG W+TI RLW +YD Q K+GV++P + + RKG G++G+P++EL+ R R+IPLN+RTTQRRLAAAL
Sbjct: 1 MPAAGSASQVAKRKNFNEEETEEVIRYLLP---GSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAAL 116
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.040e-32 Identity = 74/158 (46.84%), Postives = 101/158 (63.92%), Query Frame = 1
Query: 277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG--NSTTYP----------AP*PQGAWIEGTLERAQAVG 714
+SAAG AS KRKNF E+EEV+R+LL S+DGV + G+Y A E++GC W+TI R+W+K++++ +SG + + + RKG G KG+ I+ LRARL EIPLN+RTTQRRLAAALG ST + +P AW++GT A G
Sbjct: 1 MSAAGSASQGLKRKNFNVSEREEVVRYLLA---DSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRAHSPVSDEAWLKGTAALAALEG 155
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE) HSP 1 Score: 129 bits (324), Expect = 7.500e-31 Identity = 74/158 (46.84%), Postives = 100/158 (63.29%), Query Frame = 1
Query: 277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG--NSTTY----------PAP*PQGAWIEGTLERAQAVG 714
+SAAG AS KRKNF E+EEV+R+LL S+DGV + G+Y A E++GC W+TI R+W+K++++ +SG + + + RKG G KG+ I+ LRARL EIPLN+RTTQRRLAAALG ST + P AW++GT A G
Sbjct: 1 MSAAGSASQGLKRKNFNVSEREEVVRYLLA---DSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRAQYPVSDEAWLKGTAALAALEG 155
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 5.960e-18 Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 457 RLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALGNSTT 648
RLW +Y+ QRK+GV+ P + + RKG G+KG+PI ELR RLR+IPLNDRTTQRRLAAALG +TT
Sbjct: 19 RLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATT 82
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 6.360e-14 Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1
Query: 469 KYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG 636
+YD Q K+GV++P + + RKG G+KG+P++EL+ RLR+IPLNDRTTQRRLAAALG
Sbjct: 2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALG 57
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 5.100e-11 Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 469 KYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG--NSTTYPAP 660
+Y Q K+GV++P + + R G G+KG+P++ELR RLR+IPLN RTTQRRLAAALG ST + P
Sbjct: 2 RYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLN-RTTQRRLAAALGIPKSTLHRNP 66
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J767_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 9.070e-9 Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRL 462
+SAAG AS V KR E EEVIR+LL SK+ VLR GA+K AGE FGC W+TI RL
Sbjct: 1 MSAAGSASQVEKRNKE---ESEEVIRYLLA---GSKNRVLRYGAFKEAGETFGCHWETIKRL 56
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Mariner (Transposase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYZ1_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.080e-7 Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 337 KEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALGNS 642
+ ++ HLL S G L RGA +A +F T+ R+W +Y+ +G + D++S KG G+KG EL A++R +P+ RT R+ A +LG S
Sbjct: 11 RRAILLHLLIAS---TGGELPRGAKTSAATKFNVHRHTVDRIWSRYNDSVAAGDLSGDVSSRYKGNSGRKGYDRVELAAKIRSVPVEQRTNYRQTAKSLGLS 109 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10850.740.1 >prot_Ecto-sp9_F_contig10850.740.1 ID=prot_Ecto-sp9_F_contig10850.740.1|Name=mRNA_Ecto-sp9_F_contig10850.740.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=70bp MRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRback to top mRNA from alignment at Ecto-sp9_F_contig10850:1739..3797- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10850.740.1 ID=mRNA_Ecto-sp9_F_contig10850.740.1|Name=mRNA_Ecto-sp9_F_contig10850.740.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2059bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10850:1739..3797- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10850:1739..3797- >mRNA_Ecto-sp9_F_contig10850.740.1 ID=mRNA_Ecto-sp9_F_contig10850.740.1|Name=mRNA_Ecto-sp9_F_contig10850.740.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10850:1739..3797- (Ectocarpus species9 EcSCA_722f female)back to top |