mRNA_Ecto-sp9_F_contig10850.740.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10850.740.1
Unique NamemRNA_Ecto-sp9_F_contig10850.740.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 7.250e-43
Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = 1
Query:  277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAAL 633
            +SAAG AS V+KRKNF   EKEEVIRHLL     SK+GVL  GA+KAA E+FGC W+T  RLW++YD Q K+GVS+P L + R G  G+KGVPI+ELR RLR+IPLNDRTTQRRLAAAL
Sbjct:    1 MSAAGSASQVAKRKNFNNSEKEEVIRHLLT---GSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAAL 116          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.950e-37
Identity = 69/120 (57.50%), Postives = 92/120 (76.67%), Query Frame = 1
Query:  277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG 636
            +SAAG AS  +KRKNF  LE+EEVIRHLL    +S+DGVLR GAY+ A E++GC WKTI  +W K++Q+  +G  +  + + RKG  G+KG+ +++LR RLR+IPLN+RTTQRRLAAALG
Sbjct:    1 MSAAGSASQGTKRKNFNALEREEVIRHLLA---NSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALG 117          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 6.440e-37
Identity = 71/119 (59.66%), Postives = 92/119 (77.31%), Query Frame = 1
Query:  277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAAL 633
            + AAG AS V+KRKNF   E EEVIR+LL     SK+GVLR GA+K AGE+FG  W+TI RLW +YD Q K+GV++P + + RKG  G++G+P++EL+ R R+IPLN+RTTQRRLAAAL
Sbjct:    1 MPAAGSASQVAKRKNFNEEETEEVIRYLLP---GSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAAL 116          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.040e-32
Identity = 74/158 (46.84%), Postives = 101/158 (63.92%), Query Frame = 1
Query:  277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG--NSTTYP----------AP*PQGAWIEGTLERAQAVG 714
            +SAAG AS   KRKNF   E+EEV+R+LL     S+DGV + G+Y  A E++GC W+TI R+W+K++++ +SG  +  + + RKG  G KG+ I+ LRARL EIPLN+RTTQRRLAAALG   ST +           +P    AW++GT   A   G
Sbjct:    1 MSAAGSASQGLKRKNFNVSEREEVVRYLLA---DSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRAHSPVSDEAWLKGTAALAALEG 155          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 7.500e-31
Identity = 74/158 (46.84%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG--NSTTY----------PAP*PQGAWIEGTLERAQAVG 714
            +SAAG AS   KRKNF   E+EEV+R+LL     S+DGV + G+Y  A E++GC W+TI R+W+K++++ +SG  +  + + RKG  G KG+ I+ LRARL EIPLN+RTTQRRLAAALG   ST +            P    AW++GT   A   G
Sbjct:    1 MSAAGSASQGLKRKNFNVSEREEVVRYLLA---DSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRAQYPVSDEAWLKGTAALAALEG 155          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 5.960e-18
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  457 RLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALGNSTT 648
            RLW +Y+ QRK+GV+ P + + RKG  G+KG+PI ELR RLR+IPLNDRTTQRRLAAALG +TT
Sbjct:   19 RLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATT 82          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.360e-14
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1
Query:  469 KYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG 636
            +YD Q K+GV++P + + RKG  G+KG+P++EL+ RLR+IPLNDRTTQRRLAAALG
Sbjct:    2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALG 57          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.100e-11
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  469 KYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALG--NSTTYPAP 660
            +Y  Q K+GV++P + + R G  G+KG+P++ELR RLR+IPLN RTTQRRLAAALG   ST +  P
Sbjct:    2 RYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLN-RTTQRRLAAALGIPKSTLHRNP 66          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J767_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.070e-9
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  277 VSAAGGASNVSKRKNFTTLEKEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRL 462
            +SAAG AS V KR      E EEVIR+LL     SK+ VLR GA+K AGE FGC W+TI RL
Sbjct:    1 MSAAGSASQVEKRNKE---ESEEVIRYLLA---GSKNRVLRYGAFKEAGETFGCHWETIKRL 56          
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Match: Mariner (Transposase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYZ1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.080e-7
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  337 KEEVIRHLLFISWHSKDGVLRRGAYKAAGEEFGCDWKTIMRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDRTTQRRLAAALGNS 642
            +  ++ HLL  S     G L RGA  +A  +F     T+ R+W +Y+    +G  + D++S  KG  G+KG    EL A++R +P+  RT  R+ A +LG S
Sbjct:   11 RRAILLHLLIAS---TGGELPRGAKTSAATKFNVHRHTVDRIWSRYNDSVAAGDLSGDVSSRYKGNSGRKGYDRVELAAKIRSVPVEQRTNYRQTAKSLGLS 109          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10850.740.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Uncharacterized7.250e-4367.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.950e-3757.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.440e-3759.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.040e-3246.84protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.500e-3146.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.960e-1867.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.360e-1464.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.100e-1156.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.070e-958.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mariner2.080e-734.31Transposase n=1 Tax=Phytophthora megakarya TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10850contigEcto-sp9_F_contig10850:1739..3797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1069
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10850.740.1prot_Ecto-sp9_F_contig10850.740.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10850 2145..2354 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.1926944-UTR-Ecto-sp9_F_contig10850:1738..21441622928307.1926944-UTR-Ecto-sp9_F_contig10850:1738..2144Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10850 1739..2144 -
1692277829.1652222-UTR-Ecto-sp9_F_contig10850:1738..21441692277829.1652222-UTR-Ecto-sp9_F_contig10850:1738..2144Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10850 1739..2144 -
1622928307.2186198-UTR-Ecto-sp9_F_contig10850:2354..26611622928307.2186198-UTR-Ecto-sp9_F_contig10850:2354..2661Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10850 2355..2661 -
1692277829.18775-UTR-Ecto-sp9_F_contig10850:2354..26611692277829.18775-UTR-Ecto-sp9_F_contig10850:2354..2661Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10850 2355..2661 -
1622928307.2345874-UTR-Ecto-sp9_F_contig10850:3651..37971622928307.2345874-UTR-Ecto-sp9_F_contig10850:3651..3797Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10850 3652..3797 -
1692277829.1963022-UTR-Ecto-sp9_F_contig10850:3651..37971692277829.1963022-UTR-Ecto-sp9_F_contig10850:3651..3797Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10850 3652..3797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.204479-CDS-Ecto-sp9_F_contig10850:2144..23541622928307.204479-CDS-Ecto-sp9_F_contig10850:2144..2354Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10850 2145..2354 -
1692277829.1757066-CDS-Ecto-sp9_F_contig10850:2144..23541692277829.1757066-CDS-Ecto-sp9_F_contig10850:2144..2354Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10850 2145..2354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10850.740.1

>prot_Ecto-sp9_F_contig10850.740.1 ID=prot_Ecto-sp9_F_contig10850.740.1|Name=mRNA_Ecto-sp9_F_contig10850.740.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=70bp
MRLWKKYDQQRKSGVSNPDLTSGRKGRCGQKGVPIDELRARLREIPLNDR
TTQRRLAAALGNSTTYPAP*
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mRNA from alignment at Ecto-sp9_F_contig10850:1739..3797-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10850.740.1 ID=mRNA_Ecto-sp9_F_contig10850.740.1|Name=mRNA_Ecto-sp9_F_contig10850.740.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2059bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10850:1739..3797- (Ectocarpus species9 EcSCA_722f female)
GGAGACACATCATTATCAGAGTCAGTCTCTGGCACCTGTCTGTGTGGGTC GCTTGGTTCCCTACATCATGCCTGCCGTATATTGACCGAACTGGTGCGTG CTAGTGAGGAGGGGGGCGTTGCTTGGACAAGGGCGACCGGGGGTGGGTGA GTGAAAGGGCGAGGAAGTTATCGGCCAGATTCTGTAGCAGCTATTATTCG CCTTGAATCTCTGTCTCGTGGACTTGCAAATAATATATTTTGTTTATTTA TTGCGGCGAGTTGATGCATACAATACACACGCGGAGAGCGCAGCATAATG ATCCGGTCGGTGCGCAATAATCACGGATGGATCGGGTGCCTCTCTTTCTT TGTTGATTATCGTCATCCGATGCTTAGGCCATCGTGTCGTCGAAGAAAAC GAAATAATACTGCTGAGAGCGAACCGGCTGTTCTGTTGTGTGTATTGTTG TTTGTGTGTTTTCGTCGCTCTACGCGTAGTTTAGTTGCTGTTTTTCTTAG TAAGGTGGTGCGACGGATTTATTTGTTGCGATGGCCATACATACGCCGAA CGATTTACCCTTCGTTGTATGCATATTTCACCCGTACATGATGACCTGGT ACATAACTGCTGTATGTACACCTGTCTGTCTGTTTGGTATCTATCTCTCT CTTCTTTAAAGAAGAACCTGGTCTAAGAGAAAACAGCGCTCGCTCATAGT CAGACAAAGGGGGACAGGATAACATGTACCAATATTATTATGCAATCCCC CAACAATCAATCGGGAGGAGGATAAACATTTGGTATTACAATGGTTGCTG TCCGACCAACTTACTTGGTGAATGGAATGCTACATACGAACATGGTTGGC ACAAGAAAACAACAGACCGCGTGTGATAGTTGAAAGTAGCAGTTTTTGCG TATGTGTGGTGGTCGACTACACTGCACCGTATATTTTCATCGTCGTTTTG TTGTGTGTGGGCAAGTAAGTGGCTTTTCGATGTTGTCGTGGTTGTGCATA GATAGATAAGACTTTATACTCCCTCTGATCCGTAATATAAGGTCGATAAG GACAAAAAAAGCGGCGGAACTCGAGCCCATCGTACCCTTTTTCCGAACGG TTTTTTTTGTTGGTTCTGCCGCCCTTTCGCGGGAAGCAAGCGCAGAACCG GTGCTTTTGTCATTCCTAAGGTTGTAGCAGGTTGCCCCACCCCAGCGAAG TCGCTCGAAAATCACCACCCCAACTTTGAAGACCCGGTCAAAAGCCTTCC TCATCTGTGGTGAGGCGTGTCTGCTGCTGGGGGCGCCTCCAACGTGTCAA AACGCAAGAATTTCACCACTTTGGAAAAAGAGGAGGTGATTCGGCACCTC CTATTTATTAGCTGGCACAGCAAGGACGGGGTGCTGAGGCGAGGTGCGTA CAAGGCAGCCGGTGAGGAGTTCGGCTGCGATTGGAAGACGATTATGAGGT TGTGGAAGAAGTACGACCAGCAGCGCAAGTCTGGGGTCAGTAACCCCGAT TTGACCTCTGGCCGCAAGGGCAGATGCGGCCAGAAGGGGGTTCCTATCGA TGAACTACGTGCACGCCTCCGTGAGATCCCGCTGAACGACCGCACCACAC AGCGCCGCTTAGCAGCGGCGCTCGGGAATTCCACAACCTACCCTGCACCG TAACCTCAAGGCGCTTGGATTGAAGGCACACTCGAACGCGCTCAAGCCGT AGGAGGAGGCGTGAACCAAGGGTAACGCAGCGCTCGCGGCGGGGGAGGGG GGTGGGCCGGCTGCGTAGAACGGGACGCGCGAGTACTTTTGCTTTTTTTG CTGCAGGTCGTTGTAGATGCGAGTACTCCTTTTCTGCTGCAGGAAGGGGC ACAGCGTTGTTCTTGTGTTACTCTTATCAGTAAGCTGAGGTACGGTAGTC GACGATCGTCAGATTGCTAACAGTAGTGGTGGTGCCGAGGAGGTCTAAGG AGAAGAAGCAAATGAATTGTGGAGCTGTGGTGAAACGATGCAAAGCATCT TGAAGAGGACTGGTGAAGACCAGAGTCCTCCGGGACACTCATTGTCGAGT TTGTGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10850:1739..3797-

>mRNA_Ecto-sp9_F_contig10850.740.1 ID=mRNA_Ecto-sp9_F_contig10850.740.1|Name=mRNA_Ecto-sp9_F_contig10850.740.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10850:1739..3797- (Ectocarpus species9 EcSCA_722f female)
ATGAGGTTGTGGAAGAAGTACGACCAGCAGCGCAAGTCTGGGGTCAGTAA
CCCCGATTTGACCTCTGGCCGCAAGGGCAGATGCGGCCAGAAGGGGGTTC
CTATCGATGAACTACGTGCACGCCTCCGTGAGATCCCGCTGAACGACCGC
ACCACACAGCGCCGCTTAGCAGCGGCGCTCGGGAATTCCACAACCTACCC
TGCACCGTAAATGAGGTTGTGGAAGAAGTACGACCAGCAGCGCAAGTCTG
GGGTCAGTAACCCCGATTTGACCTCTGGCCGCAAGGGCAGATGCGGCCAG
AAGGGGGTTCCTATCGATGAACTACGTGCACGCCTCCGTGAGATCCCGCT
GAACGACCGCACCACACAGCGCCGCTTAGCAGCGGCGCTCGGGAATTCCA
CAACCTACCCTGCACCGTAA
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