mRNA_Ecto-sp9_F_contig1085.737.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1085.737.1
Unique NamemRNA_Ecto-sp9_F_contig1085.737.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1085.737.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1085contigEcto-sp9_F_contig1085:9075..13241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size928
Cds size927
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1085.737.1prot_Ecto-sp9_F_contig1085.737.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1085 9076..13241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928306.6086926-CDS-Ecto-sp9_F_contig1085:9075..95051622928306.6086926-CDS-Ecto-sp9_F_contig1085:9075..9505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1085 9076..9505 -
1692277828.8246493-CDS-Ecto-sp9_F_contig1085:9075..95051692277828.8246493-CDS-Ecto-sp9_F_contig1085:9075..9505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1085 9076..9505 -
1622928306.6211045-CDS-Ecto-sp9_F_contig1085:11769..122131622928306.6211045-CDS-Ecto-sp9_F_contig1085:11769..12213Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1085 11770..12213 -
1692277828.8340971-CDS-Ecto-sp9_F_contig1085:11769..122131692277828.8340971-CDS-Ecto-sp9_F_contig1085:11769..12213Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1085 11770..12213 -
1622928306.6337745-CDS-Ecto-sp9_F_contig1085:13188..132411622928306.6337745-CDS-Ecto-sp9_F_contig1085:13188..13241Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1085 13189..13241 -
1692277828.8442569-CDS-Ecto-sp9_F_contig1085:13188..132411692277828.8442569-CDS-Ecto-sp9_F_contig1085:13188..13241Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1085 13189..13241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1085.737.1

>prot_Ecto-sp9_F_contig1085.737.1 ID=prot_Ecto-sp9_F_contig1085.737.1|Name=mRNA_Ecto-sp9_F_contig1085.737.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=309bp
ILGPSVSLVHPNYNLLAMSYQSMSDGYSSRDSRGRSMSGASFDSFVSDSR
SRSRLWAGSRDSRDGRRLAESRRPRISEDRRRDATSRSQHRYGGSHNNYR
HHHGESRPRKRSRRSSFNSGGGSPRRCPDECRCCRGRNQRRERKRSLSRH
CLTEDYDGEDEGGMPRSLGLDKISKQMYTHGQDMIATAAKLKTCSERFEE
MKEKHRALQRDNATLRDCVGVACHEMPHLSPLEDSPLLLLNAVHTVCWKK
RRREKEVEDGLEEALGELNFVKQDVAGRLRSVVSKAKKETKKREKAEDQV
LCVVCMERP
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mRNA from alignment at Ecto-sp9_F_contig1085:9075..13241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1085.737.1 ID=mRNA_Ecto-sp9_F_contig1085.737.1|Name=mRNA_Ecto-sp9_F_contig1085.737.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4167bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1085:9075..13241- (Ectocarpus species9 EcSCA_722f female)
ATCCTCGGACCCTCCGTATCCCTCGTTCACCCCAATTACAATCTACTGGC
AATGTGAGTGTGCGCTAGACAGAGATGCCTAATCTCTCTCGTTGTTCCTG
AATGTTGCGAAGGGAACTACTGCTGTAGTCTAGACTCACATGCGCACTTG
TAGGTCACGCTATTTAGATTCTAGTCAGTCTATGTAGACGACAACGGCAA
ACAGCACTCGTACGTAGGAGTGTCGTGTGCTGCGAGCTGGGTAGGTGTGA
GGGGCGTATGGCCCACTCCCAAGGCCTGCTTGGTGGCAGTGTAGATAGAT
TTTGGGCTTCAAGTCTCGAAAAAAGTTCTGCCGCTCAGCGTCATCAACCA
CCAGCCCTTTCAGCTTTGGTCTTCGAACCGCAACAATGACAGCCAATTGC
GTGGTTATTATCCCCGAGACATATTCTGCTATCATACACTCTGTAGTGTT
GGTGCATCCTTGTGGGTGTGTGCACGTTCAAAAATCCTAACCCTACTGTA
GTGTATAATTCTACCGTAGCCCACTTGTTATTGGCTATCGGCAGACATGC
CGCTGTCGTCTACATCGCCCTGAAACAACCTCTCCTCATCCACTCGCTAG
AAATCAAAGAGCATTGCTGTGGTTATATCTCGAACGGGTAGTCTTTCTGT
GTGTTTATGTACTTTTATAAAAAGAACAAACAATATACCCCACGGGCGAG
GGGCTCAAAGCTTGTTGGGAACTTGTAAGTTAGGACAGTTAAGATCTAGC
GCGAACAATGGTTGGTACTTGGCCAAGCGCATGTAGTGTGGTACATGAAA
CCTTCAGTACGTTTGTACGTACGATATTACTCGTGTAGTTCTGCAACAGC
CGTACTCCCGGCATCATAATAGCCTATTCAATGCCTGGATATGCGTATGC
ATACTACTACTGTAGACCGCAGTATTGCTAGCTGTGCTCCTTGAAATCTA
CGAGGTGGTGGGTTGGTGGTGGCGGCTGAACCTCAGACTTCTCGCTTTGT
GCGTCGCAATGTGTACCGATCAATCAAGGTCTTACCAATCGATGTCGGAC
GGCTACAGCAGCCGCGACAGCCGAGGGAGATCGATGTCAGGAGCTTCATT
TGATTCGTTTGTCTCTGATTCAAGATCGAGATCGAGACTCTGGGCTGGCA
GTCGCGATAGTCGCGATGGTCGTCGTCTTGCTGAGAGCAGAAGGCCGAGG
ATCAGCGAAGACCGCCGACGTGACGCCACCAGCCGAAGCCAACACCGATA
CGGCGGCAGTCACAACAACTATCGTCACCATCACGGCGAGAGTCGCCCGA
GAAAGAGGAGTAGGAGGTCCAGCTTCAACTCCGGTGGCGGTAGCCCAAGG
CGGTGCCCGGACGAGTGCCGCTGCTGTCGTGGCCGAAACCAGCGCCGGGA
GCGTAAGAGGAGCCTCAGCCGACATTGCTTGACCGAGGACTACGACGGCG
AGGACGAGGGTGGCATGCCAAGGTGAGTTTTGCTGCTGAACGGTGGTAGT
GAGCTCAACGTCCAAGAGTTCGTTTTCCCTTGTCTCACCATGCATTTCGT
CATCGCTGCTCCGACCGCGCCTTGTGGATAACATGTACATACCGTAAACT
ACGGAGTTTTCCCCCTGGGGAGGGGATCGTTTTTTTTTCTGAAACTAAAC
CCCCCGGGGGGTAGTTGACGTACCGGGGAGGGCTACTTTTTTTTTTCAAC
GCTACCCCGGGGGGAAGCCCCCCCCCCGGGGGGTTGTGCAAAATAATGAT
GGTCCACACACCACACACACAAGAGAGTGGCGAAACTGGGATGGATAAGG
TTCTTGTCCGGTCGCAAGAGAGGTACCATTGCATAAGCTCATGCACAAGA
ATTCGCAGTTTGTCCGCAGGAATAAGCTATTTTTATGGTTCGGTTCTACC
TTGAGTTGTGAGATCCAAAAATGAAAACGATTATTTGTTCCCTTTGTGCG
CAAGGTTTCGTCAGCATGCTGTGGTACGTTTCAGCTGACTCCAGGGATGA
TAAATGCAAGAAATAGACAGGAAAACGAGAGCGTTTCACCCATAAAACAA
CTGCGAGGGCCAACAGACAAACGGTACACCTAAATCTCGCTCGAAACGCA
GATCTGCAAATGAATTTTCCACCCCATATCATGCTTTATGTGCTCCGCGA
TGCAACAAAATCGACTCAGAAAATAAGGGAAATACATCCCCCCCCGGGGG
GAACTCGTGGGAAACTGGTCCCCCGGGGGGAAATTGAAATACCCGGGGGC
ATCTTATTTTTTTGGTCGAAAACGATCTACCCCGGGGCTGAATAAACGAA
ACCATGCTTCCAGGCCGAAAAGGTAATGGGGGGGGGGGGAATCTGTACTA
GGGGGGCGAAACTCCGTAGTTTACGGTATCAACGCAGTTACGTTGACAGC
TTGAAATCGTTCAGCCGTATCATCAAGGAACAGTTTGTTTCTGCGTCGAA
AGCAGCGTACGTATCAACTGCATTTCGGGGAGGTCTGTTAGCCACCTACC
TGTGAGATGCTCCAGTCCTATGTCAGAATGCATGCGATACCACGCCCCCA
CCAGATCGTCAGAAAGTTCGCCTTTCTTTACAGGGGTTCCCAAGGGTTGG
GCAAAGACATAGAAACAGCAAAGAACCACCATGGCATTCCAGTCAACCGG
ATGCCTGGCCGTTCATGCAAATCGGTTGTTTTTGTTTCCCTTTTCGAAGC
CCACATGGGTGAAGGTCCCCGTAACTCCTCAATATGAACCCCAGAGCAAA
ACTGTGGAGGTAACTGACGGACACCGCGGCACGTGCTGATAACCCATAGG
AGTAATGTCTTGGAGATCACCGACCCCAATACACCGCCCACCACCACCGG
AAGGCGCCCGCGAGAACGATTGTGTGGTTATCTATAGGTGCAGTTGGTTC
AGTACTTGTTGCCGTCCGCTCAAGCGTGCGAAAGGTTGCTACTCAATGTC
ATGCTCGCCGGCCCCGTTCTTGGGTTCAAACGCCCACTTAAGGTGCATGA
CCGCTCAAAATCTCTCTTGTTGGCCTGTGCCTTTTTCTCGTCCGAAGCGC
GTAGGATTGAATAGATTCCGGGGATGTCAACGACTTCCTACAGCTGGAGA
AAAGAGCAGCTCGTGCTGCTATATCATGTGCCCGAAGTTGGCAAGTTCTC
ATTGGCTTGACTTTGAATGGTTACATAACAATTTTCTCGAAGGCTCTTCA
CGTGCAGGCAGAGAGACCCCTGCACGCAGGCAGAGGCAGAAAATGAAACG
AACAAAGACGGCCGCATGAAGCCAAGCCCACTGGTACGCGTTCAACGGAC
ACGAAAAAACAGAAGTCTATTGCGCAACCACGACGGTCTCGTCGTCCACT
ACTTCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCGTTCTCCCTGCTTCTGGTTCGTGG
TCTTTCCTCTTCCCCTTTCGCGCGCTCACTCCCTCTTTGTGTCTTTGGTC
TGGTGTGTTGACCGGCTAACAAAAAAACGCAGCTGGGCCTTTTTTACTTA
CTCTGGGTATCGGGGGAAGCGCAGCGTGTGCCTTATGGCGCCGTGGGTTA
GAAACATTACATGGTCTGTGTTTTTTCCCCCCAGAAAAATGCAGGCGGGC
CATCCGGAAAAAGTGTGATTTCCGTATGCCCTGCTCAAACCCAAAACTTT
GTACGGTCGTCCCCCAAACCTCCCCTGCCCTCGTAGATCACTCGGTTTGG
ACAAGATCTCGAAGCAAATGTACACCCATGGTCAAGACATGATTGCGACC
GCAGCCAAGCTCAAAACATGCTCGGAGCGATTCGAGGAAATGAAGGAGAA
GCACCGTGCTCTTCAGAGGGACAATGCGACGCTTCGGGACTGTGTCGGTG
TTGCTTGCCACGAGATGCCACACCTTTCCCCCCTAGAGGACTCGCCTCTC
CTGCTATTGAACGCAGTCCACACTGTATGCTGGAAGAAAAGACGTCGTGA
GAAAGAGGTGGAAGATGGCCTTGAGGAGGCTCTTGGCGAATTGAATTTCG
TGAAGCAGGATGTAGCAGGAAGGCTTCGAAGCGTGGTATCGAAAGCAAAG
AAGGAAACAAAAAAGCGCGAGAAAGCCGAGGACCAAGTGCTGTGCGTCGT
TTGCATGGAAAGACCCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1085:9075..13241-

>mRNA_Ecto-sp9_F_contig1085.737.1 ID=mRNA_Ecto-sp9_F_contig1085.737.1|Name=mRNA_Ecto-sp9_F_contig1085.737.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1854bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1085:9075..13241- (Ectocarpus species9 EcSCA_722f female)
ATCCTCGGACCCTCCGTATCCCTCGTTCACCCCAATTACAATCTACTGGC
AATATCCTCGGACCCTCCGTATCCCTCGTTCACCCCAATTACAATCTACT
GGCAATGTCTTACCAATCGATGTCGGACGGCTACAGCAGCCGCGACAGCC
GAGGGAGATCGATGTCAGGAGCTTCATTTGATTCGTTTGTCTCTGATTCA
AGATCGAGATCGAGACTCTGGGCTGGCAGTCGCGATAGTCGCGATGGTCG
TCGTCTTGCTGAGAGCAGAAGGCCGAGGATCAGCGAAGACCGCCGACGTG
ACGCCACCAGCCGAAGCCAACACCGATACGGCGGCAGTCACAACAACTAT
CGTCACCATCACGGCGAGAGTCGCCCGAGAAAGAGGAGTAGGAGGTCCAG
CTTCAACTCCGGTGGCGGTAGCCCAAGGCGGTGCCCGGACGAGTGCCGCT
GCTGTCGTGGCCGAAACCAGCGCCGGGAGCGTAAGAGGAGCCTCAGCCGA
CATTGCTTGACCGAGGACTACGACGGCGAGGACGAGGGTGGCATGCCAAG
GTCTTACCAATCGATGTCGGACGGCTACAGCAGCCGCGACAGCCGAGGGA
GATCGATGTCAGGAGCTTCATTTGATTCGTTTGTCTCTGATTCAAGATCG
AGATCGAGACTCTGGGCTGGCAGTCGCGATAGTCGCGATGGTCGTCGTCT
TGCTGAGAGCAGAAGGCCGAGGATCAGCGAAGACCGCCGACGTGACGCCA
CCAGCCGAAGCCAACACCGATACGGCGGCAGTCACAACAACTATCGTCAC
CATCACGGCGAGAGTCGCCCGAGAAAGAGGAGTAGGAGGTCCAGCTTCAA
CTCCGGTGGCGGTAGCCCAAGGCGGTGCCCGGACGAGTGCCGCTGCTGTC
GTGGCCGAAACCAGCGCCGGGAGCGTAAGAGGAGCCTCAGCCGACATTGC
TTGACCGAGGACTACGACGGCGAGGACGAGGGTGGCATGCCAAGATCACT
CGGTTTGGACAAGATCTCGAAGCAAATGTACACCCATGGTCAAGACATGA
TTGCGACCGCAGCCAAGCTCAAAACATGCTCGGAGCGATTCGAGGAAATG
AAGGAGAAGCACCGTGCTCTTCAGAGGGACAATGCGACGCTTCGGGACTG
TGTCGGTGTTGCTTGCCACGAGATGCCACACCTTTCCCCCCTAGAGGACT
CGCCTCTCCTGCTATTGAACGCAGTCCACACTGTATGCTGGAAGAAAAGA
CGTCGTGAGAAAGAGGTGGAAGATGGCCTTGAGGAGGCTCTTGGCGAATT
GAATTTCGTGAAGCAGGATGTAGCAGGAAGGCTTCGAAGCGTGGTATCGA
AAGCAAAGAAGGAAACAAAAAAGCGCGAGAAAGCCGAGGACCAAGTGCTG
TGCGTCGTTTGCATGGAAAGACCCATCACTCGGTTTGGACAAGATCTCGA
AGCAAATGTACACCCATGGTCAAGACATGATTGCGACCGCAGCCAAGCTC
AAAACATGCTCGGAGCGATTCGAGGAAATGAAGGAGAAGCACCGTGCTCT
TCAGAGGGACAATGCGACGCTTCGGGACTGTGTCGGTGTTGCTTGCCACG
AGATGCCACACCTTTCCCCCCTAGAGGACTCGCCTCTCCTGCTATTGAAC
GCAGTCCACACTGTATGCTGGAAGAAAAGACGTCGTGAGAAAGAGGTGGA
AGATGGCCTTGAGGAGGCTCTTGGCGAATTGAATTTCGTGAAGCAGGATG
TAGCAGGAAGGCTTCGAAGCGTGGTATCGAAAGCAAAGAAGGAAACAAAA
AAGCGCGAGAAAGCCGAGGACCAAGTGCTGTGCGTCGTTTGCATGGAAAG
ACCC
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