mRNA_Ecto-sp9_F_contig10847.732.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10847.732.1
Unique NamemRNA_Ecto-sp9_F_contig10847.732.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: Eukaryotic (initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G664_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.910e-44
Identity = 91/115 (79.13%), Postives = 92/115 (80.00%), Query Frame = 1 
Query:    4 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKKE-----------------------ALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            TKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKKE                       ALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNK+INSRMRFMIRDLEELR
Sbjct:   20 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKKEVATDRTLKALKFKNMDVDEDNLEALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKSINSRMRFMIRDLEELR 134
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: MI (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.980e-42
Identity = 89/115 (77.39%), Postives = 90/115 (78.26%), Query Frame = 1 
Query:    4 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKKE-----------------------ALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            TKRRMLGNIQFIGELYKKSMLKENVMKTCVE LLNAKKE                       ALGKLIRTIGSTLDTSKNTLYM EIFRLMDKIANNK+INSRMRFMIRDLEELR
Sbjct:  576 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNAKKEVGADRTLKALKFKNGDVDEDNLEALGKLIRTIGSTLDTSKNTLYMTEIFRLMDKIANNKSINSRMRFMIRDLEELR 690
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: Eukaryotic (translation initiation factor 4G n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XE16_HIBSY)

HSP 1 Score: 85.5 bits (210), Expect = 2.080e-17
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKK-------EALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            + +RRMLGNI+ IGELYKK ML E +M  C+++LL   +       EAL KL+ TIG  +D  K   YM   F +M K+ANN  ++SR+RFM++D  +LR
Sbjct: 1299 KARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGEYENPDEEDVEALCKLMSTIGEMIDHPKAKAYMDNYFEMMAKLANNMKLSSRVRFMLKDAIDLR 1398
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: MI (domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8QS48_GOSRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.680e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKK-------EALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            + +RRMLGNI+FIGELYKK ML E +M  C+++LL   +       EAL KL+ TIG  +D  K  +YM   F  M K++NN  ++SR+RFM++D  +LR
Sbjct:   44 KARRRMLGNIRFIGELYKKKMLTERIMHECIKKLLGEYENPDEEDIEALCKLMSTIGEMIDYPKAKVYMDAYFERMAKLSNNVKLSSRVRFMLKDAIDLR 143
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: LOW (QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like n=8 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BLX4_TOBAC)

HSP 1 Score: 84.3 bits (207), Expect = 5.290e-17
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKK-------EALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            Q +RRMLGNI+ IGELYKK ML E +M  C+++LL   +       EAL KL+ TIG  +D SK   YM   F +M  +ANN  ++SR+RFM+ D+ +LR
Sbjct: 1263 QARRRMLGNIRLIGELYKKKMLTERIMHECIQKLLGQYQTPDEEDIEALCKLMSTIGDMIDHSKAKDYMDAYFDMMTTMANNTDLSSRVRFMLMDIIDLR 1362
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: MI (domain-containing protein n=7 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KXJ3_PHYPA)

HSP 1 Score: 84.3 bits (207), Expect = 5.320e-17
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKK-------EALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            + +RRMLGNI+FIGELYKKSML E +M  C+++LL   +       EAL KL+ TIG  +D  K   ++   FR M+ ++NN  +++R+RFM++D+ ELR
Sbjct: 1734 KARRRMLGNIRFIGELYKKSMLTERIMHECIKKLLGEYQKPDEEDVEALCKLMSTIGRIIDHHKAKEHIDAYFRRMENLSNNSKLSARIRFMLKDVIELR 1833
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: MIF4G (domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E1G6_MICCC)

HSP 1 Score: 82.4 bits (202), Expect = 5.400e-17
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKK-------EALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            Q +RRMLGNI+FIGEL+KK ML   +M TC+ +LLN KK       EAL KL+ TIG  +D      +M   F+ +  ++ NK+I+SR RFM +D+ E+R
Sbjct:  146 QARRRMLGNIRFIGELFKKEMLTARIMHTCIMKLLNEKKNPDEEDVEALCKLMATIGRLIDRPDAKSHMDAYFKRIQGLSVNKSISSRHRFMCQDIMEMR 245
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: MIF4G (domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RTW1_OSTLU)

HSP 1 Score: 82.4 bits (202), Expect = 5.470e-17
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKK--------EALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            Q +RRMLGNI+FIGEL+KKSML E +M TC+ +LL   +        EAL KL+ T+G  LD  K   YM   FR M+ ++ ++ ++SR RFM++D+ + R
Sbjct:  146 QARRRMLGNIRFIGELFKKSMLTERIMHTCIMKLLGEGEKTPNEEDVEALCKLMTTVGGQLDHQKAKAYMDAYFRRMEVLSKSEEMSSRHRFMLQDVMDTR 246
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BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: Hypothetical (protein n=2 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SBK7_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 6.210e-17
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    7 KRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKK-------EALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            +RRMLGNI+FIGELY+KSML E +M TC+ +LL   +       EAL KL+ T G  LD  +   +M   FR +D+++ N  I+SR RFM +D++E+R
Sbjct:  153 RRRMLGNIKFIGELYRKSMLTERIMHTCIMKLLGEHQIPDEEDVEALCKLLTTTGGQLDHMRAKEHMDAYFRRIDQLSKNMGISSRHRFMCQDIKEMR 250
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Match: Eukaryotic (translation initiation factor 4G n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AE10_HIBSY)

HSP 1 Score: 84.0 bits (206), Expect = 7.230e-17
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 QTKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKK-------EALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR 279
            + +RRMLGNI+ IGELYKK ML E +M  C+++LL   +       EAL KL+ TIG  +D  K   YM   F +M K+ANN  ++SR+RFM++D  +LR
Sbjct: 1294 KARRRMLGNIRLIGELYKKKMLTERIMHDCIKKLLGEYENPDEEDVEALCKLMSTIGKMIDHPKAKGYMDAYFEMMAKLANNMKLSSRVRFMLKDAIDLR 1393
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10847.732.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Eukaryotic1.910e-4479.13initiation factor 4G n=1 Tax=Ectocarpus siliculosu... [more]
MI2.980e-4277.39domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Eukaryotic2.080e-1747.00translation initiation factor 4G n=3 Tax=Hibiscus ... [more]
MI2.680e-1747.00domain-containing protein n=2 Tax=Gossypium TaxID=... [more]
LOW5.290e-1748.00QUALITY PROTEIN: eukaryotic translation initiation... [more]
MI5.320e-1746.00domain-containing protein n=7 Tax=Physcomitrium pa... [more]
MIF4G5.400e-1747.00domain-containing protein (Fragment) n=1 Tax=Micro... [more]
MIF4G5.470e-1745.54domain-containing protein (Fragment) n=1 Tax=Ostre... [more]
Hypothetical6.210e-1746.94protein n=2 Tax=Mantoniella antarctica TaxID=81844... [more]
Eukaryotic7.230e-1747.00translation initiation factor 4G n=3 Tax=Hibiscus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10847contigEcto-sp9_F_contig10847:441..1311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog2880.D7G664
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016281,GO:0032991,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10847.732.1prot_Ecto-sp9_F_contig10847.732.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10847 441..1296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928306.3625863-CDS-Ecto-sp9_F_contig10847:440..5991622928306.3625863-CDS-Ecto-sp9_F_contig10847:440..599Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10847 441..599 -
1692277828.714824-CDS-Ecto-sp9_F_contig10847:440..5991692277828.714824-CDS-Ecto-sp9_F_contig10847:440..599Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10847 441..599 -
1622928306.392682-CDS-Ecto-sp9_F_contig10847:1191..12961622928306.392682-CDS-Ecto-sp9_F_contig10847:1191..1296Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10847 1192..1296 -
1692277828.7271786-CDS-Ecto-sp9_F_contig10847:1191..12961692277828.7271786-CDS-Ecto-sp9_F_contig10847:1191..1296Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10847 1192..1296 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928306.4091141-UTR-Ecto-sp9_F_contig10847:1296..13111622928306.4091141-UTR-Ecto-sp9_F_contig10847:1296..1311Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10847 1297..1311 -
1692277828.734841-UTR-Ecto-sp9_F_contig10847:1296..13111692277828.734841-UTR-Ecto-sp9_F_contig10847:1296..1311Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10847 1297..1311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10847.732.1

>prot_Ecto-sp9_F_contig10847.732.1 ID=prot_Ecto-sp9_F_contig10847.732.1|Name=mRNA_Ecto-sp9_F_contig10847.732.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
MLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKKEALGKLIRTIGSTLDT
SKNTLYMKEIFRLMDKIANNKAINSRMRFMIRDLEELR
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mRNA from alignment at Ecto-sp9_F_contig10847:441..1311-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10847.732.1 ID=mRNA_Ecto-sp9_F_contig10847.732.1|Name=mRNA_Ecto-sp9_F_contig10847.732.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=871bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10847:441..1311- (Ectocarpus species9 EcSCA_722f female)
CAGACGAAGCGACGCATGCTTGGCAACATCCAGTTCATCGGGGAGCTGTA
CAAGAAGAGCATGCTGAAGGAGAACGTGATGAAGACGTGCGTGGAGCAGC
TGCTCAACGCCAAGAAAGAGGTCGGCGCGGACAAGACGCTCAAGGCCCTC
AAGTTCAGGAACGGGGACGTGGACGAGGACAACCTAGAGGTTAGCGCACA
AACACACAACACACGCACACCGTCAACCCATGGCATGTCCAGTTTGACGC
AGCAAGTGCAAGGATGATGAGTAGCTTCTGGTTCATCCGTGTGAAACGTG
GCCTGGGCCGGTGAAAGCCCGGCATATCGCTCCGTACTGGCATTGCAGGG
ATGCGAGGTCAATGATCTAACGACTACGGCATGCATTTTTCCATGAGCAC
ACACCCACATTTTGTTTCTTGCCTCAACGCGTCCCCTTTTTCTTTTTTAC
TTGGGGGGCTTATTTTTAGCCTTTTTAACTGTAGCCGTGGCAAATTGGTG
TCATTGTTAACGACGTTGTGCGAGTTTGTGTGTGTGTTTAGGGTCTGTGG
ACGACCTGGTCACCCCAACAATGGTATGGGCCACTACATTTGGTTGGATT
CTGGAGTTCGTACGACAAACGAGCCACGTGGCCACGGTAACATGTGATTT
TTGGTCCCTCATCACGCGCAACTTGACTAACGTGACTGCTGTTGTCTTTT
TGTTTTTTGCAGGCTCTGGGCAAGCTGATCCGAACGATCGGGTCGACGCT
GGACACGAGCAAGAACACGTTGTACATGAAGGAGATCTTCCGCCTCATGG
ACAAGATCGCCAACAACAAGGCCATCAACTCCCGCATGAGGTTCATGATC
AGGGACCTGGAAGAGCTGCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10847:441..1311-

>mRNA_Ecto-sp9_F_contig10847.732.1 ID=mRNA_Ecto-sp9_F_contig10847.732.1|Name=mRNA_Ecto-sp9_F_contig10847.732.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10847:441..1311- (Ectocarpus species9 EcSCA_722f female)
ATGCTTGGCAACATCCAGTTCATCGGGGAGCTGTACAAGAAGAGCATGCT
GAAGGAGAACGTGATGAAGACGTGCGTGGAGCAGCTGCTCAACGCCAAGA
AAGAGATGCTTGGCAACATCCAGTTCATCGGGGAGCTGTACAAGAAGAGC
ATGCTGAAGGAGAACGTGATGAAGACGTGCGTGGAGCAGCTGCTCAACGC
CAAGAAAGAGGCTCTGGGCAAGCTGATCCGAACGATCGGGTCGACGCTGG
ACACGAGCAAGAACACGTTGTACATGAAGGAGATCTTCCGCCTCATGGAC
AAGATCGCCAACAACAAGGCCATCAACTCCCGCATGAGGTTCATGATCAG
GGACCTGGAAGAGCTGCGGGCTCTGGGCAAGCTGATCCGAACGATCGGGT
CGACGCTGGACACGAGCAAGAACACGTTGTACATGAAGGAGATCTTCCGC
CTCATGGACAAGATCGCCAACAACAAGGCCATCAACTCCCGCATGAGGTT
CATGATCAGGGACCTGGAAGAGCTGCGG
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