mRNA_Ecto-sp9_F_contig10826.721.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10826.721.1
Unique NamemRNA_Ecto-sp9_F_contig10826.721.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10826.721.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10826contigEcto-sp9_F_contig10826:1430..2073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10826.721.1prot_Ecto-sp9_F_contig10826.721.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10826 1630..2067 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928304.11747-UTR-Ecto-sp9_F_contig10826:1429..16291622928304.11747-UTR-Ecto-sp9_F_contig10826:1429..1629Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10826 1430..1629 +
1692277828.1435804-UTR-Ecto-sp9_F_contig10826:1429..16291692277828.1435804-UTR-Ecto-sp9_F_contig10826:1429..1629Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10826 1430..1629 +
1622928304.1418643-UTR-Ecto-sp9_F_contig10826:2067..20731622928304.1418643-UTR-Ecto-sp9_F_contig10826:2067..2073Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10826 2068..2073 +
1692277828.1597438-UTR-Ecto-sp9_F_contig10826:2067..20731692277828.1597438-UTR-Ecto-sp9_F_contig10826:2067..2073Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10826 2068..2073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928304.128992-CDS-Ecto-sp9_F_contig10826:1629..20671622928304.128992-CDS-Ecto-sp9_F_contig10826:1629..2067Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10826 1630..2067 +
1692277828.1513858-CDS-Ecto-sp9_F_contig10826:1629..20671692277828.1513858-CDS-Ecto-sp9_F_contig10826:1629..2067Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10826 1630..2067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10826.721.1

>prot_Ecto-sp9_F_contig10826.721.1 ID=prot_Ecto-sp9_F_contig10826.721.1|Name=mRNA_Ecto-sp9_F_contig10826.721.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=146bp
MGSSFHPCLIHLAWSARCATRRVGLGWDWSPTNSHTALRIKNTAFYTNNN
NETDKIVHCTREVEATDGVVNTATENDNHERVNYIRSTTEHPRSTTTLIA
LLIYLLLAITIHINLDTPTPRLHRNFVSFSTNLSPAVDRAQSWGV*
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mRNA from alignment at Ecto-sp9_F_contig10826:1430..2073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10826.721.1 ID=mRNA_Ecto-sp9_F_contig10826.721.1|Name=mRNA_Ecto-sp9_F_contig10826.721.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=644bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10826:1430..2073+ (Ectocarpus species9 EcSCA_722f female)
GCCATTATCTGGGACCCCGTGAAGGGGCGGCATGGGGGAGATTAATCTAT
TCTCCGGATCAAAGATAGAAAAGGTGTGTGTGTGTATGAGAGAGAGAGAG
GGATAGAGAGGTGCTTCTCGACGTGGCAAACAGCACACCGAAACAGGGGA
TCCCCCACCTTCCTCCAAAGTCGCAAACCGTTAATCATGTAGTAATAGTA
ATGGGTTCTTCATTTCACCCTTGCCTCATTCACTTGGCATGGTCTGCAAG
GTGTGCCACACGTCGTGTCGGATTGGGATGGGATTGGAGTCCTACAAACA
GCCACACAGCCTTACGGATAAAAAACACGGCTTTCTATACCAATAACAAC
AACGAAACAGACAAAATTGTCCACTGCACCAGGGAGGTTGAGGCCACTGA
TGGTGTCGTCAACACTGCAACTGAAAACGATAATCATGAGCGCGTAAACT
ATATACGAAGTACTACCGAACACCCGAGATCCACTACAACTCTAATTGCC
CTCCTTATTTACTTGCTGCTTGCGATCACAATCCACATCAACCTCGACAC
ACCAACGCCGCGCTTGCATCGAAACTTTGTTTCCTTCTCTACAAATCTGT
CGCCTGCTGTTGATCGTGCACAATCCTGGGGCGTATGAAAGCCA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10826:1430..2073+

>mRNA_Ecto-sp9_F_contig10826.721.1 ID=mRNA_Ecto-sp9_F_contig10826.721.1|Name=mRNA_Ecto-sp9_F_contig10826.721.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10826:1430..2073+ (Ectocarpus species9 EcSCA_722f female)
ATGGGTTCTTCATTTCACCCTTGCCTCATTCACTTGGCATGGTCTGCAAG
GTGTGCCACACGTCGTGTCGGATTGGGATGGGATTGGAGTCCTACAAACA
GCCACACAGCCTTACGGATAAAAAACACGGCTTTCTATACCAATAACAAC
AACGAAACAGACAAAATTGTCCACTGCACCAGGGAGGTTGAGGCCACTGA
TGGTGTCGTCAACACTGCAACTGAAAACGATAATCATGAGCGCGTAAACT
ATATACGAAGTACTACCGAACACCCGAGATCCACTACAACTCTAATTGCC
CTCCTTATTTACTTGCTGCTTGCGATCACAATCCACATCAACCTCGACAC
ACCAACGCCGCGCTTGCATCGAAACTTTGTTTCCTTCTCTACAAATCTGT
CGCCTGCTGTTGATCGTGCACAATCCTGGGGCGTATGAATGGGTTCTTCA
TTTCACCCTTGCCTCATTCACTTGGCATGGTCTGCAAGGTGTGCCACACG
TCGTGTCGGATTGGGATGGGATTGGAGTCCTACAAACAGCCACACAGCCT
TACGGATAAAAAACACGGCTTTCTATACCAATAACAACAACGAAACAGAC
AAAATTGTCCACTGCACCAGGGAGGTTGAGGCCACTGATGGTGTCGTCAA
CACTGCAACTGAAAACGATAATCATGAGCGCGTAAACTATATACGAAGTA
CTACCGAACACCCGAGATCCACTACAACTCTAATTGCCCTCCTTATTTAC
TTGCTGCTTGCGATCACAATCCACATCAACCTCGACACACCAACGCCGCG
CTTGCATCGAAACTTTGTTTCCTTCTCTACAAATCTGTCGCCTGCTGTTG
ATCGTGCACAATCCTGGGGCGTATGA
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