mRNA_Ecto-sp9_F_contig10822.720.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10822.720.1
Unique NamemRNA_Ecto-sp9_F_contig10822.720.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10822.720.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.560e-18
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 CAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFP 105
            CAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFP
Sbjct:   43 CAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFP 77
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BLAST of mRNA_Ecto-sp9_F_contig10822.720.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.810e-12
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 CAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFP 105
            C YGSLC  CAQ+ VRKRAL G LD+Y+CCQGYFP
Sbjct:   43 CCYGSLCSCCAQYTVRKRALDGNLDNYICCQGYFP 77
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BLAST of mRNA_Ecto-sp9_F_contig10822.720.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.870e-10
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 CAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFP 105
            C +G LC+ CAQF VRKRAL G L +YVCCQGYFP
Sbjct:   43 CTFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFP 77
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BLAST of mRNA_Ecto-sp9_F_contig10822.720.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.290e-8
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    7 YGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFP 105
            +G LC  CAQF VRKRAL G L++Y+CCQGY+P
Sbjct:   45 FGCLCTCCAQFIVRKRALDGNLENYLCCQGYYP 77
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BLAST of mRNA_Ecto-sp9_F_contig10822.720.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WW66_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 4.920e-5
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:    1 CAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYF 102
            C  G LC  C  F +RK+ LGG LD Y+CCQGY+
Sbjct:   38 CCAGFLCNPCVGFYMRKKVLGGNLDLYMCCQGYY 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10822.720.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized3.560e-18100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.810e-1274.29protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.870e-1071.43protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5... [more]
Uncharacterized1.290e-866.67protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6... [more]
Hypothetical4.920e-555.88protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10822contigEcto-sp9_F_contig10822:3949..4059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928304.0846975-CDS-Ecto-sp9_F_contig10822:3948..40591622928304.0846975-CDS-Ecto-sp9_F_contig10822:3948..4059Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10822 3949..4059 +
1692277828.1354606-CDS-Ecto-sp9_F_contig10822:3948..40591692277828.1354606-CDS-Ecto-sp9_F_contig10822:3948..4059Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10822 3949..4059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10822.720.1prot_Ecto-sp9_F_contig10822.720.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10822 3949..4059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10822.720.1

>prot_Ecto-sp9_F_contig10822.720.1 ID=prot_Ecto-sp9_F_contig10822.720.1|Name=mRNA_Ecto-sp9_F_contig10822.720.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=37bp
CAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFPCA
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mRNA from alignment at Ecto-sp9_F_contig10822:3949..4059+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10822.720.1 ID=mRNA_Ecto-sp9_F_contig10822.720.1|Name=mRNA_Ecto-sp9_F_contig10822.720.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10822:3949..4059+ (Ectocarpus species9 EcSCA_722f female)
TGTGCCTACGGGAGCCTGTGTTTGGGCTGCGCGCAGTTCGCCGTCAGGAA
AAGAGCCCTGGGCGGCAGGCTTGACGACTACGTGTGCTGCCAAGGGTACT
TCCCATGTGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10822:3949..4059+

>mRNA_Ecto-sp9_F_contig10822.720.1 ID=mRNA_Ecto-sp9_F_contig10822.720.1|Name=mRNA_Ecto-sp9_F_contig10822.720.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10822:3949..4059+ (Ectocarpus species9 EcSCA_722f female)
TGTGCCTACGGGAGCCTGTGTTTGGGCTGCGCGCAGTTCGCCGTCAGGAA
AAGAGCCCTGGGCGGCAGGCTTGACGACTACGTGTGCTGCCAAGGGTACT
TCCCATGTGCGTGTGCCTACGGGAGCCTGTGTTTGGGCTGCGCGCAGTTC
GCCGTCAGGAAAAGAGCCCTGGGCGGCAGGCTTGACGACTACGTGTGCTG
CCAAGGGTACTTCCCATGTGCG
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