mRNA_Ecto-sp9_F_contig10813.715.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10813.715.1
Unique NamemRNA_Ecto-sp9_F_contig10813.715.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10813.715.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 2.230e-116
Identity = 297/326 (91.10%), Postives = 297/326 (91.10%), Query Frame = 1 
Query:    1 PLIDENNTRIPSKEEAAALKMKPGSARDLHSEHIAALVAKQGADPDQSPSLGPRGGGDRPDRDRGXXXXXXXXXXXXXXXWGDRDRDWDRFGDRNKXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGGAGGGRAPSRWDALKPDRERDRGYNNRSNRDDEDGGARGVGQDARAGGXXXXXXXXXXXXXXDVGXXXXXXXX---DGLHDGGLGAHDRAVAHEKAIAAGGAXXXXXXXXXXXXXXXXXXXXXXRYGGTSEADIWDMPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEAAAFERERLEFERERAKVLQGRDG 969
            PLIDENNTRIPSKEEAAALKMKPGSARDLHSEHIAALVAKQGADPDQSPSLGPRGGGDRPDRDRGXXXXXXXXXXXXXXXWGDRDRDWDRFGDRNKXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGGAGGGRAPSRWDALKPDRERDRGYN                       XXXXXXXXXXXXXX   XXXXXXXX   DGLHDGGLGAHDRAVAHEKAIAAGGAXXXXXXXXXXXXXXXXXXXXXXRYGGTSEADIWDMPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEAAAFERERLEFERERAKVLQGRDG
Sbjct:   60 PLIDENNTRIPSKEEAAALKMKPGSARDLHSEHIAALVAKQGADPDQSPSLGPRGGGDRPDRDRGXXXXXXXXXXXXXXXWGDRDRDWDRFGDRNKXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGGAGGGRAPSRWDALKPDRERDRGYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLHDGGLGAHDRAVAHEKAIAAGGAXXXXXXXXXXXXXXXXXXXXXXRYGGTSEADIWDMPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEAAAFERERLEFERERAKVLQGRDG 385
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10813.715.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.230e-11691.10protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10813contigEcto-sp9_F_contig10813:421..4250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size972
Cds size972
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10813.715.1prot_Ecto-sp9_F_contig10813.715.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10813 421..4250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928302.7420256-CDS-Ecto-sp9_F_contig10813:420..5901622928302.7420256-CDS-Ecto-sp9_F_contig10813:420..590Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 421..590 -
1692277827.7149527-CDS-Ecto-sp9_F_contig10813:420..5901692277827.7149527-CDS-Ecto-sp9_F_contig10813:420..590Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 421..590 -
1622928302.7572708-CDS-Ecto-sp9_F_contig10813:1364..16391622928302.7572708-CDS-Ecto-sp9_F_contig10813:1364..1639Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 1365..1639 -
1692277827.724206-CDS-Ecto-sp9_F_contig10813:1364..16391692277827.724206-CDS-Ecto-sp9_F_contig10813:1364..1639Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 1365..1639 -
1622928302.7684636-CDS-Ecto-sp9_F_contig10813:2368..25481622928302.7684636-CDS-Ecto-sp9_F_contig10813:2368..2548Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 2369..2548 -
1692277827.7355673-CDS-Ecto-sp9_F_contig10813:2368..25481692277827.7355673-CDS-Ecto-sp9_F_contig10813:2368..2548Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 2369..2548 -
1622928302.7792182-CDS-Ecto-sp9_F_contig10813:3477..35431622928302.7792182-CDS-Ecto-sp9_F_contig10813:3477..3543Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 3478..3543 -
1692277827.7449334-CDS-Ecto-sp9_F_contig10813:3477..35431692277827.7449334-CDS-Ecto-sp9_F_contig10813:3477..3543Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 3478..3543 -
1622928302.7893975-CDS-Ecto-sp9_F_contig10813:3969..42501622928302.7893975-CDS-Ecto-sp9_F_contig10813:3969..4250Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 3970..4250 -
1692277827.7525592-CDS-Ecto-sp9_F_contig10813:3969..42501692277827.7525592-CDS-Ecto-sp9_F_contig10813:3969..4250Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10813 3970..4250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10813.715.1

>prot_Ecto-sp9_F_contig10813.715.1 ID=prot_Ecto-sp9_F_contig10813.715.1|Name=mRNA_Ecto-sp9_F_contig10813.715.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=324bp
PLIDENNTRIPSKEEAAALKMKPGSARDLHSEHIAALVAKQGADPDQSPS
LGPRGGGDRPDRDRGGGGGRADGRRDGQPGWGDRDRDWDRFGDRNKDRDR
GGPLGRYDQDRERRDGRRDRPRDGPGGAGGGRAPSRWDALKPDRERDRGY
NNRSNRDDEDGGARGVGQDARAGGGRDRDRRNGRDRDRDVGDRDRGGGGD
GLHDGGLGAHDRAVAHEKAIAAGGAGAAAAAAAAAGANRDRAGAGRGRYG
GTSEADIWDMPTTLPGDGGATKEPPKNTRAAGLRSADRERREENRKKDEA
AAFERERLEFERERAKVLQGRDG*
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mRNA from alignment at Ecto-sp9_F_contig10813:421..4250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10813.715.1 ID=mRNA_Ecto-sp9_F_contig10813.715.1|Name=mRNA_Ecto-sp9_F_contig10813.715.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3830bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10813:421..4250- (Ectocarpus species9 EcSCA_722f female)
CCCCTCATCGACGAGAACAACACTCGAATCCCGTCGAAGGAAGAGGCCGC
CGCCCTGAAGATGAAGCCCGGCTCCGCCAGAGACCTGCACTCCGAGCACA
TCGCCGCCCTCGTCGCCAAGCAGGGGGCAGACCCGGACCAGTCCCCGTCC
CTTGGGCCGAGGGGGGGCGGCGACCGGCCTGATCGGGACCGTGGGGGCGG
CGGCGGGCGCGCGGACGGGAGGCGTGACGGTCAGCCTGGGTGGGGGGACC
GCGATAGGGATTGGGACAGATTTGGAGACAGGTGTGTCATTTCATCATGT
TTTTGTTTTTATTTTTTGTTCTTGCATGCATACAATCATAAAAAGACTAC
TCGTTCGACATGATGCCACGGTCGAGGTCGTTACATTTACATCGAGTGGG
AAGAAAACCGGCTTGGTTTTTTGTTGTCCAGAGTGGGGGTGGCGGAGGAT
ACGTTTTTTTTACTCGCTTCAAGATTTTTTTCCTGGTCTCGCTTTACTTT
GAATTCTGCATTCATCCTTCAGAACGGCATTGCAGTTCCGGCTTTTGCTC
ATCCATCCCCCTTTGACGTCACGTGCGATGCTCTCTCTCAACTTGCGCCG
TCGTTGATACGCGATCATATCAAATCCACCGTGTTCTTTCATCCTCGACG
CGCCATCAACAATACGGCACGAACGGTAACGGTGTACTGTACTGTACTGT
ATACTAGAAACAAGGACCGGGACCGAGGAGGACCGTTGGGAAGATACGAT
CAAGACAGGGAACGCCGGGATGGGTGAGTTGACCCCCCCCCCCCCGCGCG
TTGGCCAAGCTTGCGCGTCCTCCTGAGCGCCGACGTCCCGTTTGTGTCCG
CGAGTTGTTTGTTTTTTTGGTTGAACCGCGAGACTTGATGCACGGGGTGC
TAGGTTGGAGCACGCCCATCGGGTGCAAGGCGGCATGGTGCGGTTTTCAT
TGCGGCACTTATGCAGTGCACCGCTTTGCTGGGTAGATGGAAAGACATCC
TTCAATATGGTGTGAACTTGGATGGCGCCGTAGCTAGATCAATGTGGTGT
GAACTTGGATGGCACCGTAGCTAGATCAATGTGGTGTGGACTCGGACGGC
ACCGTTGCTAGATCCTTGGGAAAATTGTCCCGGTGGTCTCTATATTTGGA
AGTACGTGCACTTTGGAACGGAGTCTTGGGCGGGCTGGCTGAAACAGGAG
CCCCTTGCCCCGGCTGGGTCACTTGCTGTTGCGCTTGTACGAAGACGTGC
ACGGCATAAGCCGCGCGCCCTTCCATTTTTCAAACTGTTTTCCGATTCTG
CTTCCGTTGCGCTAGCACTGCTGTTGTAGTGGTTCTGTACGTGGTAGGTA
TGCCCTTCGGAATGCAGGTCGTACTGCATGTACATGTTGTGGGTTGGGTG
CCTTTTTGGTAGGTGAGAGAATACGCGGGATACTTGCTTTGATCGGTTTG
CCAGGATGTTAACCACCTCAGCTTGTTGTTTCCCTTCCCGTTTTTTCCCC
TTTACGTCCTGCATATTGCTGTTTACTTTGACCCCCCCTCCAATTCGTCT
CTTCGGCTCTCCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTGTCTG
TCTTTCTATCTGTCTGTCTGTCTGTCCCTCTCCTCCCCCCTGTCCGCTAC
TATGTCTGCCTACCTATCTGTCGGCGCCCGTTGCCGTCGTGATCGAGAGC
AGAAGGCGCGACAGGCCTAGAGATGGACCGGGTGGTGCAGGCGGGGGTCG
TGCCCCGTCCCGCTGGGATGCCCTCAAGCCGGACCGGGAGAGGGACAGGG
GCTACAACAACCGCAGCAACCGCGATGACGAAGACGGGGGCGCGAGGGGG
GTAGGGCAGGATGCGCGGGCTGGCGGCGGAAGGTATGTGGTACCGTTACC
GTACCGTTGGTTTTGGTGGTTGTGATGTTGAGCGGCGTGCTGATGTTGGC
GGTAGGTTGAGAGAAGGGGGGGAGGGGATAGGAGATAGGGCGCAAGCTTC
GGTCGGTAGCGTTTTTACTCCTATCCTGCGCGGTTCGCTGTTCAATCTGG
AGGCATTGTGTTCTACTACTGACAGCAGTAGATATCCGTTTCAGCTCTCT
GTTTTTGTTTGATCCGTCAGCTGGTCACCACCCTCAGATTTGTGGCGCCT
TGATTGCGCCAGGAATACATGACATATCTACCCTTATGCTTCTTTGCCCC
ACGGTGGTTCCATCCCCCGTCCAGGCCACTACATTGGATTGTACTTCTCT
AGTCTTTTTGGGGAGTCCCTTAGTTTTCTATACTAGCAGGACAACGCTTT
TTGTGTCGTCGCGTGTTCTCCTCTTTCGTCCTCACGCTTGTTATTTTTTT
CTCGCTCCAACACCGCGGCTCCATCTCACGCGAAACGTTCCGCGTTCATT
TCGTAGGTGTGACGCCGCATCATCCCCTGCCCCCACCCCCCGCGCCCCCG
CCTCTTTATCCCCGACGTGCACTTCACATACTCATGTCATGTCACCGCTC
ACTACTACCTTCGTTATCACCCCTTGCCGTATATGGCCACCGCATGTTCC
TCCTCCTCGCCCTATTCCCACCGCACATCGGTTACACAACGTGAACGATA
TATCGGGACAGAGACCGAGACAGGCGAAACGGCAGAGACAGGGACAGGGA
CGTTGGGGACAGGGATAGGGGCGGCGGCGGCGACGGCCTCCACGACGGGG
GGCTTGGGGCCCACGACCGGGCCGTAGCACACGAGAAGGCGATCGCTGCT
GGCGGTGCCGGTGCTGCGGCCGCTGCCGCTGCCGCCGCTGGTGCCAACAG
AGACAGGGCGGGGGCGGGGAGGGGGCGGTACGGGGGGACCAGCGAGGCGG
ATATCTGGGACATGCCGACCACGCTGCCCGGTGACGGTGAGAGAGAGAGA
GAGACTTGTTTTTGCGTACAATTTCTGGCTGCTGCTTTTGTTGCCTTGGC
GTTTTTTTTTTGCTGCTGCTGTTGTGTGGTTGTTGTTGATGGTGATGGTG
ATGGTGATGGTGGCGGTTTGTGGTGTGTTAGTGTTGAGGAACATCACCGT
TCTTATGCCTGTGTGCTTGTCATGTGGAGTACCGGTCACCTCGTAGTTCT
ATTGTTCTTAACCAGTCGTCTGTATGTGTATGAGTATGTGTATCGTATGT
ATGCTGTGTAACAGGTAGATTACGCGGTCCTTGCATGTGCACGTGTTGTG
ATCGTTCTCAAGGAACCCAGCCCCCCCCGGTGCAAATCCCTTACCAACAA
CAAGCAAACCCATGGGCTTCCTCATTCCTCATTACCATGGGGAGGTACGT
CGACACCTCCAACCACAATCACAATGTCTAGAGGGCATAAGCGATGGCGA
TAGAGTTTCTGGAAAGTTTTGTTTTAACCCACCACCACGCAGAGAAGACA
CGTACTCTACACGAGTTATGCTTCACGACAAATCCACTGCCACCCGCCCT
ACCCTAGCCAGGGATGAACAGAAAATCGTCGTCTGCGGGGTCTGTGTGTG
TTGGCCCTATCTACACACTCACCTTCGGTGTATATGTACATGGTTGACGT
ATCACCTGGGGTCATCCCGGAGGAGTATCGGACAGGGTTATTTTGTCATG
TTTTTCGTCCAAAAATGTATATATGCATTGATGTTGTTTGCGTCGAAACT
TGTCTGTCAGGGGGAGCAACGAAAGAGCCGCCGAAGAACACAAGGGCCGC
TGGCCTCCGCAGCGCGGACCGTGAGCGTCGGGAGGAGAACCGCAAGAAGG
ACGAGGCGGCGGCGTTCGAACGGGAGAGGCTGGAGTTCGAGAGGGAGAGG
GCCAAGGTTCTGCAAGGACGCGATGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10813:421..4250-

>mRNA_Ecto-sp9_F_contig10813.715.1 ID=mRNA_Ecto-sp9_F_contig10813.715.1|Name=mRNA_Ecto-sp9_F_contig10813.715.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10813:421..4250- (Ectocarpus species9 EcSCA_722f female)
CCCCTCATCGACGAGAACAACACTCGAATCCCGTCGAAGGAAGAGGCCGC
CGCCCTGAAGATGAAGCCCGGCTCCGCCAGAGACCTGCACTCCGAGCACA
TCGCCGCCCTCGTCGCCAAGCAGGGGGCAGACCCGGACCAGTCCCCGTCC
CTTGGGCCGAGGGGGGGCGGCGACCGGCCTGATCGGGACCGTGGGGGCGG
CGGCGGGCGCGCGGACGGGAGGCGTGACGGTCAGCCTGGGTGGGGGGACC
GCGATAGGGATTGGGACAGATTTGGAGACAGCCCCTCATCGACGAGAACA
ACACTCGAATCCCGTCGAAGGAAGAGGCCGCCGCCCTGAAGATGAAGCCC
GGCTCCGCCAGAGACCTGCACTCCGAGCACATCGCCGCCCTCGTCGCCAA
GCAGGGGGCAGACCCGGACCAGTCCCCGTCCCTTGGGCCGAGGGGGGGCG
GCGACCGGCCTGATCGGGACCGTGGGGGCGGCGGCGGGCGCGCGGACGGG
AGGCGTGACGGTCAGCCTGGGTGGGGGGACCGCGATAGGGATTGGGACAG
ATTTGGAGACAGAAACAAGGACCGGGACCGAGGAGGACCGTTGGGAAGAT
ACGATCAAGACAGGGAACGCCGGGATGGAAACAAGGACCGGGACCGAGGA
GGACCGTTGGGAAGATACGATCAAGACAGGGAACGCCGGGATGGAAGGCG
CGACAGGCCTAGAGATGGACCGGGTGGTGCAGGCGGGGGTCGTGCCCCGT
CCCGCTGGGATGCCCTCAAGCCGGACCGGGAGAGGGACAGGGGCTACAAC
AACCGCAGCAACCGCGATGACGAAGACGGGGGCGCGAGGGGGGTAGGGCA
GGATGCGCGGGCTGGCGGCGGAAGAAGGCGCGACAGGCCTAGAGATGGAC
CGGGTGGTGCAGGCGGGGGTCGTGCCCCGTCCCGCTGGGATGCCCTCAAG
CCGGACCGGGAGAGGGACAGGGGCTACAACAACCGCAGCAACCGCGATGA
CGAAGACGGGGGCGCGAGGGGGGTAGGGCAGGATGCGCGGGCTGGCGGCG
GAAGAGACCGAGACAGGCGAAACGGCAGAGACAGGGACAGGGACGTTGGG
GACAGGGATAGGGGCGGCGGCGGCGACGGCCTCCACGACGGGGGGCTTGG
GGCCCACGACCGGGCCGTAGCACACGAGAAGGCGATCGCTGCTGGCGGTG
CCGGTGCTGCGGCCGCTGCCGCTGCCGCCGCTGGTGCCAACAGAGACAGG
GCGGGGGCGGGGAGGGGGCGGTACGGGGGGACCAGCGAGGCGGATATCTG
GGACATGCCGACCACGCTGCCCGGTGACGAGACCGAGACAGGCGAAACGG
CAGAGACAGGGACAGGGACGTTGGGGACAGGGATAGGGGCGGCGGCGGCG
ACGGCCTCCACGACGGGGGGCTTGGGGCCCACGACCGGGCCGTAGCACAC
GAGAAGGCGATCGCTGCTGGCGGTGCCGGTGCTGCGGCCGCTGCCGCTGC
CGCCGCTGGTGCCAACAGAGACAGGGCGGGGGCGGGGAGGGGGCGGTACG
GGGGGACCAGCGAGGCGGATATCTGGGACATGCCGACCACGCTGCCCGGT
GACGGGGGAGCAACGAAAGAGCCGCCGAAGAACACAAGGGCCGCTGGCCT
CCGCAGCGCGGACCGTGAGCGTCGGGAGGAGAACCGCAAGAAGGACGAGG
CGGCGGCGTTCGAACGGGAGAGGCTGGAGTTCGAGAGGGAGAGGGCCAAG
GTTCTGCAAGGACGCGATGGGTAGGGGGAGCAACGAAAGAGCCGCCGAAG
AACACAAGGGCCGCTGGCCTCCGCAGCGCGGACCGTGAGCGTCGGGAGGA
GAACCGCAAGAAGGACGAGGCGGCGGCGTTCGAACGGGAGAGGCTGGAGT
TCGAGAGGGAGAGGGCCAAGGTTCTGCAAGGACGCGATGGGTAG
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