mRNA_Ecto-sp9_F_contig1081.712.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1081.712.1
Unique NamemRNA_Ecto-sp9_F_contig1081.712.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG79_ECTSI)

HSP 1 Score: 578 bits (1491), Expect = 2.490e-207
Identity = 321/330 (97.27%), Postives = 323/330 (97.88%), Query Frame = 1 
Query:    1 MPARRSRSSSRSGGDGSSTRSYSEDQVHAFSGENNDNNSMNNREGSTKPTKSGLASFQASGRFLASYDHHRDARDAPSTSRRHRGGDTYGINRSGVDDARKLEEGVRGLS-QPKDGSKRPLGENKTGNRGSNSHRHKDTGFLAALRTTLFGAREPVSDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNAVAARVIEEGASAPGVTSLSLGDFIKIMGAADFADKLTIPL 987
            M ARRSRSSSRSGGDGSSTRSYSEDQV AFSGENNDNNSMNNREGS KPTKSGLASFQASGRFLASYDHHRDARDAPSTSRRHRGGDTYGINRSGVDDARKLEEG+RGLS QPKDGSKRP GEN+TGNRGSN HRHKDTGFLA LRTTLFGAREPVSDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNAVAARVIEEGASAPGVTSLSLGDFIKIMGAADFADKLTIPL
Sbjct:    1 MLARRSRSSSRSGGDGSSTRSYSEDQVRAFSGENNDNNSMNNREGSAKPTKSGLASFQASGRFLASYDHHRDARDAPSTSRRHRGGDTYGINRSGVDDARKLEEGIRGLSSQPKDGSKRPSGENETGNRGSNGHRHKDTGFLATLRTTLFGAREPVSDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNAVAARVIEEGASAPGVTSLSLGDFIKIMGAADFADKLTIPL 330
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BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: EF-hand (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.330e-33
Identity = 71/155 (45.81%), Postives = 96/155 (61.94%), Query Frame = 1 
Query:  523 KELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNAVAARVIEEGASAPGVTSLSLGDFIKIMGAADFADKLTIPL 987
            +EL   R  FL  V++  +ITR+EF  IPSV  +PLR+RL+VCFGF  +D L F++           SA  DQKLR+AF L D D DG++S  D+  YLE I   PEG +IDL AVAAR+I+E  + P   +++  DF ++M  AD   +L IPL
Sbjct:    1 RELHSLRRRFLQHVSDRDYITRDEFAAIPSVNISPLRDRLMVCFGFHQLDWLPFRDFAEAIAPFNNPSAPADQKLRVAFQLQDFDDDGELSATDVRCYLERIITIPEGAEIDLEAVAARIIQEACTNPAQKAITQADFSRVMQGADL--RLYIPL 153
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BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSL2_9ARCH)

HSP 1 Score: 108 bits (270), Expect = 7.690e-25
Identity = 60/174 (34.48%), Postives = 97/174 (55.75%), Query Frame = 1 
Query:  466 SDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDS-MDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNAVAARVIEEGASAPGVTSLSLGDFIKIMGAADFADKLTIP 984
            SD+  E +EE  M++GF  +E+   +  FL        + +E FL +  + NNPL+ER+ +CFG+D  +  L F +             QR+QKL+ AF + D D DG ++KNDLV+YLE +T+     K  ++ VA +V++E AS     +++  DF +++   DF  KL +P
Sbjct:   14 SDIPDEKMEEFRMLSGFKPREIHRLKKSFLKYTENRDLLAKESFLSLEPLVNNPLKERIALCFGYDEEVVELDF-QAFLCGLALFNSPGQREQKLKTAFRIQDFDNDGVINKNDLVKYLEALTSGTLDEK-QISEVADQVLKETASDALQENITYNDFQRVVAPQDFQAKLRLP 185
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BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: Aste57867_10739 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSR6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.200e-23
Identity = 67/177 (37.85%), Postives = 99/177 (55.93%), Query Frame = 1 
Query:  454 REPVSDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELIT-----AAPEGVKIDLNAVAARVIEEGASAPGVTSLSLGDFIKIMGAADFAD 969
            +E   DL +E LEE+ MVT     +++  R  FL   + +  +T++EFL IP+VA NPLRERL   F       ++F++           S+ RD KL+MAF L D+DGDG+V+K DLV Y++L+       A E  K +++ +A R +EE +S P    LS  DF K++   D  D
Sbjct:    8 KEVPCDLDLERLEEIRMVTQLPISDIQQMRLRFLGW-SPSDDMTKDEFLAIPAVAVNPLRERLFSLFELTPTGTIRFQDFVTLMAVFTYHSS-RDTKLKMAFKLQDVDGDGKVTKGDLVAYMKLVVDFGEMPADEADK-NMDTLAMRTLEEASSDPSGEFLSYDDFAKVVMTTDDYD 181
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BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: EF-hand (domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U202_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-20
Identity = 67/185 (36.22%), Postives = 98/185 (52.97%), Query Frame = 1 
Query:  451 AREPVSDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELIT---AAPEGVKID--LNAVAARVIEEGASAPGVTSLSLGDFIKI-MGAADFADKLTIPL 987
            ++E   DL++E LEE+ M+T     E+   R  FL   +    +T+E+F  IP VA NPLR RL   F       + F++           S+ RD KLRM+F L D+DGDG++SK DLV Y++L+      P+  ++D  L+ +A R +EE ++      LS  DF K+ M   DF  KL   L
Sbjct:    6 SKEVECDLNMERLEEIRMLTQLPIPEIIKMRLQFLKW-SPNDEMTQEQFFAIPGVAVNPLRNRLFELFELSPTHTVSFQDFATLMAVFTYHSS-RDNKLRMSFKLQDMDGDGKISKADLVSYMKLVVNFGGVPDPDELDKKLDMLATRTLEEASTDASGDFLSYDDFAKVVMTTDDFETKLLFDL 188
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GK44_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.770e-19
Identity = 60/180 (33.33%), Postives = 100/180 (55.56%), Query Frame = 1 
Query:  451 AREPVSDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNAVAARVIEEGASAPGVTSLSLGDFIKIMGAAD-FADKLTIPL 987
            ++E   DLS+E LEE+ M+T     ++   R  FL   + +  +T+++F  IP+VA NPLR RL   F   +   + F++            + RD KLR++F L D+DGDG+++K DL+ Y++L+     G K+D+  +A+R +EE ++      LS  DF K++   D +  KL + L
Sbjct:    6 SKEVECDLSLERLEEIRMLTQLPIPDIIKMRVQFLKW-SPSDDMTQDQFFAIPAVAVNPLRHRLFSLFELSASQTIAFQDFASLMAIFTYHGS-RDSKLRLSFKLQDMDGDGRITKPDLIAYMKLVVDF--GDKLDV--LASRTLEEASTDASGDFLSYDDFAKVVTTTDDYETKLLLEL 179
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BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: Calcineurin (regulatory subunit B n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFZ7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-15
Identity = 59/189 (31.22%), Postives = 92/189 (48.68%), Query Frame = 1 
Query:  469 DLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQ--------------RDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNA--VAARVIEEGASAPGVTSLSLGDFIKIMGAADFADKLTIPL 987
            DLS E +EE+ M+T    ++++  R  +L    +   +T++ F  IP +A NPL+ERL   F      ++ F              AQ              +D KLR +F + D DGDG++S+ DL+ YL L+ A P  +  D+    + AR +EE +S      L+  DF K++   +F  KL IPL
Sbjct:   15 DLSPEQIEEIRMLTLLPVEDIQHMRLQYLRWSTDDR-LTKDAFFAIPVIARNPLKERLWSLFESSPDGHVSFHVHCPSYMLYLIWGAQAFVLVMAVFTYHSSKDSKLRASFKMHDFDGDGRLSRADLLSYLRLV-ADPGDMSEDIEKAHLVARTLEEASSDAAAEFLTFDDFTKVVLTTEFEAKLQIPL 201
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1I7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.180e-15
Identity = 49/126 (38.89%), Postives = 71/126 (56.35%), Query Frame = 1 
Query:  451 AREPVSDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELI 828
            ++E   DL++E LEE+ M+T     E+   R  FL   +    +T+E+F  IP VA NPLR RL   F       + F++           S+ RD KLRM+F L D+DGDG++SK DLV Y++L+
Sbjct:    6 SKEVECDLNMERLEEIRMLTQLPIPEIIKMRLQFLKW-SPNDEMTQEQFFAIPGVAVNPLRNRLFELFELSPTHTVSFQDFATLMAVFTYHSS-RDNKLRMSFKLQDMDGDGKISKADLVSYMKLV 129
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BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: Putative (ca2+/calmodulin-dependent protein phosphat n=33 Tax=Culicoidea TaxID=41827 RepID=A0A023EIB8_AEDAL)

HSP 1 Score: 78.6 bits (192), Expect = 1.090e-13
Identity = 54/177 (30.51%), Postives = 93/177 (52.54%), Query Frame = 1 
Query:  481 ETLEELHMVTGFTYKELRLTRSHFLALV-NEASFITREEFLEIPSVANNPLRERLLVCFGFDSMDN-LKFKEXXXXXXXXXXXSAQ-------RDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKID-LNAVAARVIEEGASAPGVTSLSLGDFIKIMGAADFADKLTI 981
            E + ++H  TGFT  ++    S F +L  ++   +TRE+FL IP +A NPL ER++  F  DS D+ + F++                     R++KLR AF + D+D D  +S+++L+  L+++  A   +  D LN++A R I E A + G   ++  DF + +   D   K++I
Sbjct:   12 EEIAQIHEETGFTPNQIERLYSRFTSLDRSDCGTLTREDFLRIPELAINPLCERIVHSFFADSSDDRVNFRQFTQVLAHFRPIKPSKENKLNSREEKLRFAFKMYDLDDDDNISRDELLSILQMMVGA--NISQDQLNSIAERTIVE-ADSMGQGKITFEDFCRALERTDVEQKMSI 185
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Match: Hypothetical (protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D416_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 3.050e-13
Identity = 52/175 (29.71%), Postives = 89/175 (50.86%), Query Frame = 1 
Query:  466 SDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASF-ITREEFLEIPSVANNPLRERLLVCFGFDSMDNLKFKEXXXXXXXXXXXSAQRDQKLRMAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNAVAARVIEEGASAPGVTSLSLGDFIKIMGAADFADKLTIPL 987
            S L+ E ++ +  +T F+ +E++     F  L  +AS  IT +EF++IP +A NPL ER++  F  D  + + F+E              + +KL+ AF + D+DGDG +S  +L   L+++  A     + L  +  + I E A       +S  +FI ++G +    KL IPL
Sbjct:    6 SSLTPEEIQAIENLTSFSEEEIKRLHRRFNKLDKDASGRITIDEFMQIPELATNPLIERVIALFDSDGDETVDFREFVTALSTFSVHGDPQ-RKLKFAFRVYDVDGDGFISNGELFTVLKMMVGA-NLTDVQLQQIVDKTIME-ADKDRDGKISFEEFIALIGHSSMEQKLYIPL 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1081.712.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
EF-hand2.490e-20797.27domain-containing protein n=1 Tax=Ectocarpus silic... [more]
EF-hand1.330e-3345.81domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
EF-hand7.690e-2534.48domain-containing protein n=1 Tax=archaeon TaxID=1... [more]
Aste57867_107391.200e-2337.85protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
EF-hand1.270e-2036.22domain-containing protein n=2 Tax=Aphanomyces inva... [more]
EF-hand2.770e-1933.33domain-containing protein n=1 Tax=Aphanomyces asta... [more]
Calcineurin1.120e-1531.22regulatory subunit B n=1 Tax=Achlya hypogyna TaxID... [more]
EF-hand1.180e-1538.89domain-containing protein n=1 Tax=Aphanomyces inva... [more]
Putative1.090e-1330.51ca2+/calmodulin-dependent protein phosphat n=33 Ta... [more]
Hypothetical3.050e-1329.71protein n=1 Tax=Palpitomonas bilix TaxID=652834 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1081contigEcto-sp9_F_contig1081:18073..22559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score585.1
Seed ortholog evalue2e-164
Seed eggNOG ortholog2880.D8LG79
KEGG koko:K06268,ko:K17610
KEGG Pathwayko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009892,GO:0010563,GO:0010921,GO:0010923,GO:0016020,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0035303,GO:0035305,GO:0043086,GO:0043167,GO:0043169,GO:0044092,GO:0044464,GO:0045936,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0065007,GO:0065009,GO:0071944
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0034@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-17_004050.1
Exons9
Model size990
Cds size990
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928302.427973-CDS-Ecto-sp9_F_contig1081:18072..184011622928302.427973-CDS-Ecto-sp9_F_contig1081:18072..18401Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 18073..18401 +
1692277827.5640728-CDS-Ecto-sp9_F_contig1081:18072..184011692277827.5640728-CDS-Ecto-sp9_F_contig1081:18072..18401Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 18073..18401 +
1622928302.4473982-CDS-Ecto-sp9_F_contig1081:19115..193001622928302.4473982-CDS-Ecto-sp9_F_contig1081:19115..19300Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 19116..19300 +
1692277827.5768628-CDS-Ecto-sp9_F_contig1081:19115..193001692277827.5768628-CDS-Ecto-sp9_F_contig1081:19115..19300Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 19116..19300 +
1622928302.4660091-CDS-Ecto-sp9_F_contig1081:19502..195981622928302.4660091-CDS-Ecto-sp9_F_contig1081:19502..19598Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 19503..19598 +
1692277827.5900154-CDS-Ecto-sp9_F_contig1081:19502..195981692277827.5900154-CDS-Ecto-sp9_F_contig1081:19502..19598Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 19503..19598 +
1622928302.482524-CDS-Ecto-sp9_F_contig1081:19788..198651622928302.482524-CDS-Ecto-sp9_F_contig1081:19788..19865Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 19789..19865 +
1692277827.6008315-CDS-Ecto-sp9_F_contig1081:19788..198651692277827.6008315-CDS-Ecto-sp9_F_contig1081:19788..19865Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 19789..19865 +
1622928302.4978113-CDS-Ecto-sp9_F_contig1081:20315..203381622928302.4978113-CDS-Ecto-sp9_F_contig1081:20315..20338Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 20316..20338 +
1692277827.608895-CDS-Ecto-sp9_F_contig1081:20315..203381692277827.608895-CDS-Ecto-sp9_F_contig1081:20315..20338Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 20316..20338 +
1622928302.5190654-CDS-Ecto-sp9_F_contig1081:20656..206971622928302.5190654-CDS-Ecto-sp9_F_contig1081:20656..20697Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 20657..20697 +
1692277827.6171734-CDS-Ecto-sp9_F_contig1081:20656..206971692277827.6171734-CDS-Ecto-sp9_F_contig1081:20656..20697Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 20657..20697 +
1622928302.5319848-CDS-Ecto-sp9_F_contig1081:21412..215221622928302.5319848-CDS-Ecto-sp9_F_contig1081:21412..21522Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 21413..21522 +
1692277827.6284695-CDS-Ecto-sp9_F_contig1081:21412..215221692277827.6284695-CDS-Ecto-sp9_F_contig1081:21412..21522Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 21413..21522 +
1622928302.544001-CDS-Ecto-sp9_F_contig1081:22216..222971622928302.544001-CDS-Ecto-sp9_F_contig1081:22216..22297Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 22217..22297 +
1692277827.6384702-CDS-Ecto-sp9_F_contig1081:22216..222971692277827.6384702-CDS-Ecto-sp9_F_contig1081:22216..22297Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 22217..22297 +
1622928302.5574038-CDS-Ecto-sp9_F_contig1081:22511..225591622928302.5574038-CDS-Ecto-sp9_F_contig1081:22511..22559Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 22512..22559 +
1692277827.646455-CDS-Ecto-sp9_F_contig1081:22511..225591692277827.646455-CDS-Ecto-sp9_F_contig1081:22511..22559Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1081 22512..22559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1081.712.1prot_Ecto-sp9_F_contig1081.712.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1081 18073..22559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1081.712.1

>prot_Ecto-sp9_F_contig1081.712.1 ID=prot_Ecto-sp9_F_contig1081.712.1|Name=mRNA_Ecto-sp9_F_contig1081.712.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=330bp
MPARRSRSSSRSGGDGSSTRSYSEDQVHAFSGENNDNNSMNNREGSTKPT
KSGLASFQASGRFLASYDHHRDARDAPSTSRRHRGGDTYGINRSGVDDAR
KLEEGVRGLSQPKDGSKRPLGENKTGNRGSNSHRHKDTGFLAALRTTLFG
AREPVSDLSIETLEELHMVTGFTYKELRLTRSHFLALVNEASFITREEFL
EIPSVANNPLRERLLVCFGFDSMDNLKFKEFVEILSIFNNPSAQRDQKLR
MAFTLVDIDGDGQVSKNDLVRYLELITAAPEGVKIDLNAVAARVIEEGAS
APGVTSLSLGDFIKIMGAADFADKLTIPL*
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mRNA from alignment at Ecto-sp9_F_contig1081:18073..22559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1081.712.1 ID=mRNA_Ecto-sp9_F_contig1081.712.1|Name=mRNA_Ecto-sp9_F_contig1081.712.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4487bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1081:18073..22559+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGGCTCGGAGGTCCCGCAGTAGCAGCCGCAGCGGCGGTGATGGATC
GTCAACTCGGTCCTACTCCGAAGATCAAGTCCATGCGTTCTCCGGCGAGA
ACAACGACAACAACAGCATGAACAATAGGGAAGGCTCGACGAAGCCCACG
AAGAGTGGTTTGGCTTCTTTCCAGGCGAGTGGACGTTTTCTTGCGTCATA
CGACCACCACAGAGACGCACGCGATGCGCCCTCGACAAGTCGCCGTCATC
GAGGCGGTGACACCTACGGGATCAACCGCTCCGGGGTGGACGACGCGAGG
AAGCTCGAAGAGGGCGTTCGTGGACTCAGGTACGCCGCGATTGCCTTGTT
TTTGTTTAGTTTCGAGAGCCACGGTCGGACTCGTCATCGCCTTTGTCACG
AGGTGTGTACCGCTGCTGTACATAATCACTCCCAACGTGTCCAGTGCGCC
GTACGGCTGGGCTCCGTGCTTCAGGCGCGTATCCGCGGTTTTACCGCTGT
ACGGCTGGCAAAGCTGTCTGGTGGAGCCTGTAACCCACAAACTCACACAC
TCTACAGTATAGCATCATACGTCGTGCACTACTGCTGTAGCACAACCGTC
CCCCTTGCGTGGAGTTCTCTCCATAGTCTAAGATGATGAAACCGTTTTTG
TACATTAGATGCCATGTTCACCCGACTCGGCACGATTATTTCACGTGCAA
ACAAATAAGTCCACTGAGGACCCGGGGCTTGTGAACCAGTTTGTATAGCA
GCCTCTACGCAGTAGGCCGGGGAAGCTCGCCGCGGTATAACAGGTACCAG
CAAATACGTTTTTCGGTTGACACTGATTTGCTTACAATGCATGCACCCAT
TCCAGAGAGAACCCTTTGTCAGAGTGTTGCGCCACGCAGGAGGCGGTTCT
TGTTCGACTTTTACACACCCCCATGCATTTCGTATTTCGACCTATCTATC
AGTCTGTCTGTCTCTCGATCTGCTTCACAATTCTCATTAATGCCGCCCAC
CTTTTCCTGGATGCATGGGTCGTGCCATGGGCAACCACAACAGTCAACCA
AAGGACGGGAGCAAGAGGCCGTTAGGGGAGAATAAGACAGGCAACAGGGG
CTCGAACAGCCACCGCCACAAGGATACTGGCTTCCTCGCGGCACTCAGGA
CGACGTTGTTCGGCGCCCGCGAACCGGTGTCCGACCTGAGCATCGAGACG
TTGGAGGAGCTGCACATGGTGACGGGCTGTGAGTAGTAAACCTGCTCCTT
CGATGTTGCAAGCTTCGAATTTCCTGCTGGCATCCTCCGCCACTTGCTGT
TGGTCTTGCACGAGGGTCACGTCGCCTGGCAGAAGGAAGTTTGCCCCCAC
TGCACCCGCGTGAAACGCCGTCGTAAGTGGTTTCCTAACGATTATTTCAT
TCTTTGGTGGACGTACAATCGTGGCCGCAGTCACGTACAAGGAGCTACGA
CTCACCCGGTCTCACTTCCTTGCTCTGGTGAACGAGGCAAGCTTTATCAC
CAGGGAGGAATTCCTCGAGATACCATGTGAGCCAACCATTTGGCCACGAT
CGAGCGCTGGAACGAACAGAGTTTTCCAATTACTTCTCTCGACGTACTTG
AAACAGCCAACTCGTTACCATGACAGGTACATAGGGTCACATGGGGCGCG
CCGACCGGTGCCATGGGCGACTTACTCTCGCGAAATCCCTTTTTCCTTTC
CCTGCTCCTATCATAGCCGTGGCAAACAACCCGCTGAGAGAGCGTCTGCT
CGTTTGCTTCGGTTTCGATTCGATGGACAACTTGAAGTTTAAGGTGAGCT
CTGATGACGTTCATCTCGTCCGCACAAGCTATGTCCTCGGGAACTCAACC
AGCAAATTTCATGGAAAACGACGGTACTATACGCACTTTTCGAACATCAT
GCACACGCTCTAGATGTAGAGAAACCTGGTCCCACGGCGTCTTCAAGCGG
TATTCGCCTCACGTGTAGACAGGTTATGTTCCTCGAAAGCACCCTAATCA
CCCAACACCGCTTCTGAATACGGAGCATACCTCACGGTTCCGGAGAGAAA
AATCCTGTTTTTCGCTTTTTCGGTCCTGAGCCTCAAGCATCGCTTACTGT
GAGAAACAACAAACATCCCGCGCCTTGGCTGGCTCATATCTCGGCCAAGC
CTCTTGCCTCTGGTCTTTGATAACACCCCCTCCTCTGGCCCTTTCCACGT
GTATCTGTCGCTATTCGTCGTGAACCCGTTCGGGACATCGCAGGAGTTCG
TGGAGATCCTATCAATGTGAGGGTTTCACGCCTTCGAACAGTATGTACAG
CACTGGAGTAGCGTTTCGTTGATTCTCGATCTATTGCCTAGTCCCTTGCT
TGTGTCACGGGTGCACGGCGTACTCACGTGAAAAAATCGCCAGCCCATGT
CAGCCCGACAGCTTGGAGAACCGATCTTGTTTCTTGCAAAATACCAATCA
GGATATCTGGAAGCAGAATATCGGCGAGCTTTGGGTCCCACCCCCGACAA
CAACCCCCCTCGCAGTCCTTCAAGTGTTCTTGAACCAGCCCGGCTTAACT
GTTATTCCTGCTCGTTTGTGCGGTCCTTTCGCAGCTTCAACAATCCGAGC
GCCCAGAGGGATCAAAAGCTGAGAAGTGAGTGTATCGAGGGCGTCTCTAT
CGTTGGGGGCAGCCGGTGGAGGCTCCCTGGATCGAAATTTGGCTCCCCCC
CGTGTGTAGCTGAAACATCTTCGAAGTCTCGTACTTTGTACGTACGTATA
GATCCTTCGAGGAAATCGTACATCACTAGCTACGCCTCTACCGCTACGGT
CAAGAACTACGACAAGTTGACTATGATTTCTTATGTTTCGCCCCAAATGT
GTTTTCCTGACCATAGGCTCGAAACACTTTTTGTGGGGCCTTGTGGCCTG
CGGTTGTGACGAACTTCCCTCCAAAGTCGCGCCAGCCCATTTCCAGGCTG
AAAGAAAACCGTTCGAGACTCTGCAGTACATATCTCGGCATCTGCTGTAG
AAGCTAAACCAGTACGTTCCGCGCCCTCCACGTGTCCCACACTTGGATGT
TCAAAAACACACAGTCCACAGTATTTTGCCTCGTCTTGGCAACGACACCG
GTTCACACGGTGTGGTGCGAAAAGAAAGAGAGTCGTCTTGAAGATTTGTG
GTGTAGGTTCGAGCACGCATACGGACGGCCAGATCTTGGCACGGAAAACG
CACTTCTCCCCTCGGCAATCTACTGCTGCTGTACGTAGTCGATCCTCGAG
ACACAACCCTCAGAGCTCGAGCTACCCCCTGCCCTTCCTTAACAAGGAAA
AGTGGCGCGTTCTTGCTTCATCTTGATTACTACTGCGCAGTGGCCTTTAC
GCTTGTCGATATCGACGGCGACGGCCAGGTGTCAAAGAATGATCTCGTGC
GATACCTCGAGCTGATCACGGCCGCGCCGGAGGGTGTGAAGATAGACCTG
GTGAGTGGTTGAGACCACTCAAACCGACTCACATTTGACCTTGCAATTGC
TTGCTCGGGGTAAAGTGGTCGGATGCACAAGCAGGAGCCAATGAGTCCAA
CATGTTCGAGATAAGTCCAACATATTAGAGTTAGTGTCGCCTGAAGGGAA
AAGGAGCGCAGTTTGAATGGGCCAGAACGAGGTTGTGAATCTGCTTTTGG
TGGGAATACACCGGTTCGACACCTGGTTCAGCATTTCATCAATACTGAGA
TGGGCGGTGTTCCTCCAGATATTAGGGCTTAGGTAAGCGTATCACAGGCC
TCGTGCGGTGATTGTGCTCACTGGAAGCTGGCTGATTACAGAAGATGGAG
ACCAGATTGCATGACAGACGGCAATAGAAAGATTGTATTCGACAAGAAAT
ACGCCGTGTTTACGACCAGGCAACGCCATCTCCACCTCGGGAGCACGAAG
ACGAGGAATTTGCGTGTGTGGACTTGCCCGTGATTGACGAGAAAACCGCT
CGTTTCCGACCACGCGCGTGTTGTAGACGGTCTCGTTTTCATGGAAGTCA
ACCACCACAAGGAACTGACCATTTTGTTGTGCATGGGAATCATCTGGATT
GGAGGATGACAAGGAGTTCACTTAAGGTACTTTGCCCCCAACAATCCTCC
CTCCCCCCTCCCTGTCATACACATACCACCACCCGACCATCCAGAACGCC
GTCGCTGCGAGAGTCATCGAGGAGGGTGCGTCTGCGCCAGGAGTCACGTC
GTTGTCGCTCGGTGACTTCATCAAGGTAGTTTACCGTTTGGGCCAATTTT
GTTTGAGAAAGGTCTGATCTTCAGACACGGCCATGCCTCAAGAGATCTGG
TGAAGTATCTGAGCACCCCCATGTGTCAAGAACAACGAAATAAGGTAGTC
TTTCCCCCTCTCAATCCCCGTTCCTGTCCTATTTCCTGCCAAACTGCCAA
ACAATGCTATTCTGGCCTCCATCCCCGGCGGACATTCAGATCATGGGTGC
CGCAGACTTTGCAGACAAGCTGACGATCCCATTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1081:18073..22559+

>mRNA_Ecto-sp9_F_contig1081.712.1 ID=mRNA_Ecto-sp9_F_contig1081.712.1|Name=mRNA_Ecto-sp9_F_contig1081.712.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1980bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1081:18073..22559+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGGCTCGGAGGTCCCGCAGTAGCAGCCGCAGCGGCGGTGATGGATC
GTCAACTCGGTCCTACTCCGAAGATCAAGTCCATGCGTTCTCCGGCGAGA
ACAACGACAACAACAGCATGAACAATAGGGAAGGCTCGACGAAGCCCACG
AAGAGTGGTTTGGCTTCTTTCCAGGCGAGTGGACGTTTTCTTGCGTCATA
CGACCACCACAGAGACGCACGCGATGCGCCCTCGACAAGTCGCCGTCATC
GAGGCGGTGACACCTACGGGATCAACCGCTCCGGGGTGGACGACGCGAGG
AAGCTCGAAGAGGGCGTTCGTGGACTCAGATGCCGGCTCGGAGGTCCCGC
AGTAGCAGCCGCAGCGGCGGTGATGGATCGTCAACTCGGTCCTACTCCGA
AGATCAAGTCCATGCGTTCTCCGGCGAGAACAACGACAACAACAGCATGA
ACAATAGGGAAGGCTCGACGAAGCCCACGAAGAGTGGTTTGGCTTCTTTC
CAGGCGAGTGGACGTTTTCTTGCGTCATACGACCACCACAGAGACGCACG
CGATGCGCCCTCGACAAGTCGCCGTCATCGAGGCGGTGACACCTACGGGA
TCAACCGCTCCGGGGTGGACGACGCGAGGAAGCTCGAAGAGGGCGTTCGT
GGACTCAGTCAACCAAAGGACGGGAGCAAGAGGCCGTTAGGGGAGAATAA
GACAGGCAACAGGGGCTCGAACAGCCACCGCCACAAGGATACTGGCTTCC
TCGCGGCACTCAGGACGACGTTGTTCGGCGCCCGCGAACCGGTGTCCGAC
CTGAGCATCGAGACGTTGGAGGAGCTGCACATGGTGACGGGCTTCAACCA
AAGGACGGGAGCAAGAGGCCGTTAGGGGAGAATAAGACAGGCAACAGGGG
CTCGAACAGCCACCGCCACAAGGATACTGGCTTCCTCGCGGCACTCAGGA
CGACGTTGTTCGGCGCCCGCGAACCGGTGTCCGACCTGAGCATCGAGACG
TTGGAGGAGCTGCACATGGTGACGGGCTTCACGTACAAGGAGCTACGACT
CACCCGGTCTCACTTCCTTGCTCTGGTGAACGAGGCAAGCTTTATCACCA
GGGAGGAATTCCTCGAGATACCATTCACGTACAAGGAGCTACGACTCACC
CGGTCTCACTTCCTTGCTCTGGTGAACGAGGCAAGCTTTATCACCAGGGA
GGAATTCCTCGAGATACCATCCGTGGCAAACAACCCGCTGAGAGAGCGTC
TGCTCGTTTGCTTCGGTTTCGATTCGATGGACAACTTGAAGTTTAAGCCG
TGGCAAACAACCCGCTGAGAGAGCGTCTGCTCGTTTGCTTCGGTTTCGAT
TCGATGGACAACTTGAAGTTTAAGGAGTTCGTGGAGATCCTATCAATGAG
TTCGTGGAGATCCTATCAATCTTCAACAATCCGAGCGCCCAGAGGGATCA
AAAGCTGAGAACTTCAACAATCCGAGCGCCCAGAGGGATCAAAAGCTGAG
AATGGCCTTTACGCTTGTCGATATCGACGGCGACGGCCAGGTGTCAAAGA
ATGATCTCGTGCGATACCTCGAGCTGATCACGGCCGCGCCGGAGGGTGTG
AAGATAGACCTGTGGCCTTTACGCTTGTCGATATCGACGGCGACGGCCAG
GTGTCAAAGAATGATCTCGTGCGATACCTCGAGCTGATCACGGCCGCGCC
GGAGGGTGTGAAGATAGACCTGAACGCCGTCGCTGCGAGAGTCATCGAGG
AGGGTGCGTCTGCGCCAGGAGTCACGTCGTTGTCGCTCGGTGACTTCATC
AAGAACGCCGTCGCTGCGAGAGTCATCGAGGAGGGTGCGTCTGCGCCAGG
AGTCACGTCGTTGTCGCTCGGTGACTTCATCAAGATCATGGGTGCCGCAG
ACTTTGCAGACAAGCTGACGATCCCATTGTGAATCATGGGTGCCGCAGAC
TTTGCAGACAAGCTGACGATCCCATTGTGA
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