mRNA_Ecto-sp9_F_contig10805.710.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE) HSP 1 Score: 285 bits (730), Expect = 3.130e-93 Identity = 140/154 (90.91%), Postives = 152/154 (98.70%), Query Frame = 1
Query: 244 VPSQQRRSRALQGLSWQQEEGALAASPAADGGVFPTLEESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHQCNYTSEAREICLSHYQLIDEPVQLELLSRQKVLAGHFLWGFQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTRTLEK 705
+PSQQRRSRALQGLSWQQ+ GALAA+PA+DGGVFP LEESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVH+CNYTSEAREICL+H++L+DEPVQLELLSRQKVLAGHFLWGFQRH++RPYLMVTALRNPLEVYVSAQQYTHKRKT+TLEK
Sbjct: 1 MPSQQRRSRALQGLSWQQD-GALAAAPASDGGVFPALEESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHRCNYTSEAREICLAHFKLVDEPVQLELLSRQKVLAGHFLWGFQRHLRRPYLMVTALRNPLEVYVSAQQYTHKRKTKTLEK 153
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE) HSP 1 Score: 153 bits (386), Expect = 2.360e-40 Identity = 73/120 (60.83%), Postives = 94/120 (78.33%), Query Frame = 1
Query: 343 FPTLEESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHQCNYTSEAREICLSHYQLIDEPVQLELLSRQKVLAGHFLWGFQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTRTLE 702
FP LE+STVMFLHVFKCAGSTLR+M V WA+AE GAIV C+ + ICL+ ++LI E VQ+++L +QK+LAGHF+WGFQR V++P+LMVT+LRNPLE +VS +Q+ H T TLE
Sbjct: 146 FPPLEDSTVMFLHVFKCAGSTLRQMFVDWAKAEGASGAIVTSCDEVQKEGVICLAKHELIKESVQMKMLLKQKILAGHFIWGFQRLVEKPFLMVTSLRNPLEAFVSGRQFLHPDMTETLE 265
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.900e-30 Identity = 72/147 (48.98%), Postives = 99/147 (67.35%), Query Frame = 1
Query: 298 EEGA--LAASP---AADG---GVFPTLEESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHQCN---YTSEAREICLSHYQLIDEPVQLE-LLSRQKVLAGHFLWGFQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTRTLE 702
EEGA L P ADG FP++ ST++FLHVFKCAG+TLR +L WA+ E GAIV C +T+ R ICL+ + +P++ + L++ K+LAGHFLW F+ +V PYLMVT LRNPLE++VS+QQ+ HK +T+TL+
Sbjct: 73 EEGAKGLVLQPKTLVADGPELSSFPSVSNSTILFLHVFKCAGTTLREVLTTWAKLEGLNGAIVEYCRSKTFTNVGR-ICLNSQNDLMDPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLD 218
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI) HSP 1 Score: 124 bits (310), Expect = 3.620e-29 Identity = 60/133 (45.11%), Postives = 92/133 (69.17%), Query Frame = 1
Query: 298 EEGALAASPAADGGVFPTLEESTVMFLHVFKCAGSTLRRMLVAWAEA-EDELGAIVHQCNYTSEAREICLSHYQLIDEPVQLELLSRQKVLAGHFLWGFQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTR 693
+ GA+AA+ A+ G +T++F+H++KCAGS+LR +L WAEA E ++G +V + S+ +ICL H+ LI+E Q + +V+AGHF WGFQ HV++PY+M T LRNPLE++VS QQY +++ +R
Sbjct: 40 DRGAVAAAAGAEVG-------TTLLFMHLWKCAGSSLRHLLRDWAEAKEQDIGIVVRCTDVVSKTGKICLKHHSLINERFQAPFIRLHQVVAGHFTWGFQNHVRQPYVMFTTLRNPLELFVSGQQYLNRKASR 165
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE) HSP 1 Score: 104 bits (259), Expect = 9.720e-23 Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 358 ESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHQCNYTS-EAREICLSHYQLIDEPVQLELLSRQKVLAGHFLWG-------------------FQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTRTLEK 705
+ T+MFLHV+KC G+TLRR++ WA +E A V C + S + R++CL +Y+LI Q E ++RQKVLAGHF WG FQ + P+ +VT LRNPLE++VS +QY ++ T TL K
Sbjct: 60 DGTLMFLHVWKCGGTTLRRLMCDWANSEGLPCATVAGCGHLSLKERKVCLLNYKLIFPEQQGEFIARQKVLAGHFRWGESRVTSACHTVTRTLFASGFQVYAAEPHWLVTTLRNPLELFVSGEQYLNRATTATLSK 195
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF0_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.010e-22 Identity = 70/191 (36.65%), Postives = 103/191 (53.93%), Query Frame = 1
Query: 205 GAVDGGTGRGPTSVPSQQRRSRALQGLSWQQ--------EE--------GALAASPAADGGVFPTLEESTVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHQCNYTSEARE--------ICLSH--YQLIDEPVQLELLSRQKVLAGHFLWGFQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTRTL 699
G +DG + Q++R L ++WQ+ EE GA + A + F + ST +FLHVFKCAG++LR + +A+A+ GA++ C+ T + + IC+ H ++ DE + L+S KVLAGHF W F+ PYLMVT LRNPLE++VSA Q+ H+ +TRTL
Sbjct: 29 GVIDG-------QLAQQRQREELLPVVNWQEAWEQHQDEEERQQQDRWPGAPLVANARELASFSSPAISTTLFLHVFKCAGTSLREVFMAFAKTNGWTGAVIAGCSKTQKEFQFHDPPGSVICVRHEDHRPKDENIGRWLVSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTL 212
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Similar (to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI) HSP 1 Score: 100 bits (249), Expect = 7.140e-22 Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 391 CAGSTLRRMLVAWAEAEDELGAIVHQCN---YTSEAREICLSHYQLIDEPVQLE-LLSRQKVLAGHFLWGFQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTRTLE 702
CAG+TLR +L WA+ E GAIV C +T+ R ICL+ + P++ + L++ K+LAGHFLW F+ +V PYLMVT LRNPLE++VS+QQ+ HK +T+TL+
Sbjct: 2 CAGTTLREVLTTWAKLEGWNGAIVEYCRSKTFTNAGR-ICLNSQNDLMNPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLD 108
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA9_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 4.330e-12 Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 313 AASPAADGGVFPTLEE----STVMFLHVFKCAGSTLRRMLVAWAEAEDELGAIVHQC-NYTSEAREICLSHYQLIDEPVQLELLSRQKVLAGHFLWGFQR 597
A+S D GV E +T++F+H++KCAGS+LR +L WAEA+ + IV +C + S+ +ICL + LI+E Q + +V+AGHF WG R
Sbjct: 152 ASSDGGDRGVVAPAEGDEVGTTLLFMHLWKCAGSSLRHLLRDWAEAKGQYIGIVVRCTDVVSKTGKICLKRHSLINERFQAPFIRLHQVVAGHFTWGLHR 251
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 6.000e-11 Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 421 VAWAEAEDELGAIVHQCNYTSEARE--------ICLSH--YQLIDEPVQLELLSRQKVLAGHFLWGFQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTRTL 699
+A+A+ GA++ C+ + + IC+ H ++ D+ + L+S KVLAGHF W F+ PYLMVT LRNPLE++VSA Q+ H+ +TRTL
Sbjct: 1 MAFAKTNGWTGAVIAGCSKRQKEFQFHDPPGSIICVRHEDHRPKDDNIGKWLVSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTL 103
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 4.890e-8 Identity = 31/74 (41.89%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 484 EAREICLSHYQLI-DEPVQLELLSRQKVLAGHFLWGFQRHVKRPYLMVTALRNPLEVYVSAQQYTHKRKTRTLE 702
E+ ICL+ + D Q ++ +VLAGHFLW +++V P+L++T LR+PLE++VSA+Q+ H+ +T +LE
Sbjct: 107 ESHVICLNDQNALRDSASQRWEVAGTRVLAGHFLWDLRQYVTPPHLLITMLRDPLELFVSAKQFKHREETASLE 180 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10805.710.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10805.710.1 >prot_Ecto-sp9_F_contig10805.710.1 ID=prot_Ecto-sp9_F_contig10805.710.1|Name=mRNA_Ecto-sp9_F_contig10805.710.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=235bp MAAARTAAAAAAASALGLVVAVCLLLRQEGRHPTILAGFLGDNNALRVYGback to top mRNA from alignment at Ecto-sp9_F_contig10805:973..4238+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10805.710.1 ID=mRNA_Ecto-sp9_F_contig10805.710.1|Name=mRNA_Ecto-sp9_F_contig10805.710.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3266bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10805:973..4238+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10805:973..4238+ >mRNA_Ecto-sp9_F_contig10805.710.1 ID=mRNA_Ecto-sp9_F_contig10805.710.1|Name=mRNA_Ecto-sp9_F_contig10805.710.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1410bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10805:973..4238+ (Ectocarpus species9 EcSCA_722f female)back to top |