mRNA_Ecto-sp9_F_contig10804.709.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H6_ECTSI) HSP 1 Score: 395 bits (1016), Expect = 7.310e-135 Identity = 226/335 (67.46%), Postives = 231/335 (68.96%), Query Frame = 1
Query: 1 MVCLPARLVVAAATMVVNSILAATTTGVVNVEIVEDLNFADLADAVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDASGIAAHLAMLERDRRRVLEHQKKYFSPATTRLGDSSGGGGDGSGASDLGISKLELDTSGVILVSLAVRSNTAADDVSSSRTMSLADRFRAAVGQEGASLVLFAPEPSPKARRLIKEIRKAAPILALRDRPTKVILVDFQNASGGGGDDGSRGAAVLHEDGSRRMQGSSRSGDPALPAGTEDILAKRQLAADVGVTFGDGPELR 1005
MV LPARL+VAAATMVVNSILAATTTGVVNVEIVEDLNF DLADAVQGHPFL VAFYSPGCGHCRRLLPSWTQAAQLIEDQ LPIRLARMDVSSRGGM+AWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDA+GIAAHLAMLER ARRLIKEIRKAAPILALRD PTKVILVDFQNASGGGGDDGSRG AVLHEDGSRR QGSSRSGDPALPAGTEDILAKRQLAAD+GVTFG+GPELR
Sbjct: 1 MVYLPARLMVAAATMVVNSILAATTTGVVNVEIVEDLNFTDLADAVQGHPFLVVAFYSPGCGHCRRLLPSWTQAAQLIEDQRLPIRLARMDVSSRGGMNAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDANGIAAHLAMLER-------------------------------------------------------------------------------------------------ARRLIKEIRKAAPILALRDPPTKVILVDFQNASGGGGDDGSRGTAVLHEDGSRRRQGSSRSGDPALPAGTEDILAKRQLAADIGVTFGEGPELR 238
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide-isomerase (Fragment) n=2 Tax=Calypte anna TaxID=9244 RepID=A0A091IKS5_CALAN) HSP 1 Score: 84.0 bits (206), Expect = 2.620e-14 Identity = 37/95 (38.95%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 121 DLADAVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDASGI 405
+ A A++ H L V FY+P CGHC+RL P++ QAA ++ ++ +P+RLA++D +++ + K F + PT+K+F N PL Y G +D GI
Sbjct: 13 NFARALKEHQLLLVEFYAPWCGHCQRLAPAFAQAATMLRNESIPVRLAKVDATAQVALA--KEFNITSYPTLKLFQHGNRTHPLAYTGRMDTEGI 105
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide-isomerase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MRN2_MICPC) HSP 1 Score: 82.0 bits (201), Expect = 1.450e-13 Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1
Query: 133 AVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLI-----EDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFVGNNPD--EPLPYAGHLDASGIAAHLAML 426
AV+ H F+AV FY+P CGHC+RL P W +AA+++ + + PI LARMD +++ FG+K PT+K+F D + YAG A GI HL L
Sbjct: 40 AVKEHAFVAVEFYAPWCGHCKRLEPEWAKAAEVLAANAKKTREPPIVLARMDAANQANSKIAADFGVKAFPTIKIFRNGEADTEDGEDYAGPRHADGIVEHLTKL 144
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide-isomerase n=2 Tax=Fukomys damarensis TaxID=885580 RepID=A0A091EH80_FUKDA) HSP 1 Score: 80.5 bits (197), Expect = 4.860e-13 Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 109 LNFADLADAVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDASGIAAHLAMLERDRRRV 447
LN + L+ A+Q H L V FY+P CGHC+ L P +++AA L+ED+ +P+ LA++D + + + FG+ PT+K F N P Y G +A GIA L RRRV
Sbjct: 51 LNGSTLSWALQEHSALLVEFYAPWCGHCQALAPEYSKAAILLEDESVPVTLAKVDGPAEPDL--MEKFGVTEYPTIKFFQDGNHTHPEEYTGPREAEGIAEWL------RRRV 155
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide-isomerase n=2 Tax=Melopsittacus undulatus TaxID=13146 RepID=A0A8C6J561_MELUD) HSP 1 Score: 74.7 bits (182), Expect = 3.810e-11 Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 121 DLADAVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFVGNNPDEPLPYAG 384
+ A A+ H L V FY+P CGHC+RL P++TQAA+ + ++ P RL ++D ++ + K FG+ PT+K+F N P+ Y G
Sbjct: 55 NFARALSEHRLLLVEFYAPWCGHCQRLAPAYTQAAEALRNESSPARLGKVDAMAQTALA--KEFGITSYPTLKLFRDGNRTHPIDYTG 140
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide-isomerase n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4WUS5_OIKDI) HSP 1 Score: 73.2 bits (178), Expect = 1.180e-10 Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query: 106 DLNFADLADAVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDASGIAAHLAMLERDRRRVLEHQKKYFSPATTRLGDSS 504
DL + A++ H L V F++P CGHC++L P + AA + ++ PIR+A++D ++ G + + +G+ PT+K+F G +E Y G +A GI A++ +K PA+T + +S
Sbjct: 20 DLTESTFQGAIEQHDTLMVEFFAPWCGHCKKLAPEYESAADALNEEDPPIRIAKVDCTANGEL--CQKYGVSGYPTIKMFKG--AEESGKYEGARNADGITAYM--------------RKQSGPASTAVDSTS 134
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide-isomerase n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZAU0_9ARAE) HSP 1 Score: 71.6 bits (174), Expect = 4.020e-10 Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 1
Query: 109 LNFADLADAVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFV--GNNPDEPLPYAGHLDASGIAAHLAMLERDRRRVLEHQKKYFSPATTRLGDS 501
L+ A+ +D V HPF+ V FY+P CGHC++L P + +AA ++ PI LA++D + + + PT+K+ G N E Y G D+ GI +E+ KK P +T L S
Sbjct: 53 LDSANFSDTVAKHPFIVVEFYTPWCGHCKKLAPEYEKAAAILSKHDPPIVLAKVDANDEVNKKLASKYEVNGYPTLKILKNEGKNIQE---YKGPRDSEGI--------------VEYLKKQVGPPSTELKSS 168
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide-isomerase n=7 Tax=Crocodylia TaxID=1294634 RepID=A0A151P667_ALLMI) HSP 1 Score: 71.6 bits (174), Expect = 4.180e-10 Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 133 AVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDASGI 405
A+ H L V FY+P CGHC+ L P ++QAA +++++ L +RLA++D + + A FG+ P +K+F N P Y G D+ GI
Sbjct: 70 ALHEHRLLLVKFYAPWCGHCQALAPEYSQAAGILKNESLDLRLAKVDATEETVLSA--EFGVTGYPVLKLFRDGNRTHPTDYTGARDSQGI 158
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Protein (disulfide-isomerase n=7 Tax=Solanum TaxID=4107 RepID=M1BHF1_SOLTU) HSP 1 Score: 70.5 bits (171), Expect = 9.450e-10 Identity = 36/109 (33.03%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 94 EIVEDLNFADLADAVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVF-VGNNPDEPLPYAGHLDASGIAAHL 417
E V L+ ++ +D V H F+ V FY+P CGHC++L+P + +AAQ++ P+ LA++D S F +K PT+K+ G + + Y G +A GI +++
Sbjct: 33 EFVVTLDHSNFSDFVGRHKFIVVEFYAPWCGHCKKLVPEYEKAAQILSQNDPPVVLAKVDASEEQNKVLASEFDIKGFPTLKILRYGGSVVQD--YKGPREADGIVSYV 139
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0H7V9_9ROSA) HSP 1 Score: 69.3 bits (168), Expect = 2.290e-9 Identity = 35/108 (32.41%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 94 EIVEDLNFADLADAVQGHPFLAVAFYSPGCGHCRRLLPSWTQAAQLIEDQHLPIRLARMDVSSRGGMHAWKAFGLKRLPTVKVFVGNNPDEPLPYAGHLDASGIAAHL 417
E V L+ ++ +D V H F+ V FYSP CGHC++L P + +AA ++ P+ LA++D +G++ PT+K+ + N Y G +A GI A++
Sbjct: 35 EFVLTLDRSNFSDTVSKHDFIVVEFYSPTCGHCKKLAPEYEKAASILSINDPPLVLAKVDAIEEVNKGLASEYGVQGYPTIKI-LRNGAKTVREYNGPREADGIVAYV 141 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10804.709.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10804.709.1 >prot_Ecto-sp9_F_contig10804.709.1 ID=prot_Ecto-sp9_F_contig10804.709.1|Name=mRNA_Ecto-sp9_F_contig10804.709.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=335bp MVCLPARLVVAAATMVVNSILAATTTGVVNVEIVEDLNFADLADAVQGHPback to top mRNA from alignment at Ecto-sp9_F_contig10804:1542..4089+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10804.709.1 ID=mRNA_Ecto-sp9_F_contig10804.709.1|Name=mRNA_Ecto-sp9_F_contig10804.709.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2548bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10804:1542..4089+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10804:1542..4089+ >mRNA_Ecto-sp9_F_contig10804.709.1 ID=mRNA_Ecto-sp9_F_contig10804.709.1|Name=mRNA_Ecto-sp9_F_contig10804.709.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2010bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10804:1542..4089+ (Ectocarpus species9 EcSCA_722f female)back to top |