mRNA_Ecto-sp9_F_contig1080.706.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL60_ECTSI) HSP 1 Score: 448 bits (1152), Expect = 2.850e-154 Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 1
Query: 139 MASAQARPPAATADVATTAGGTLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA 855
M SAQARPPAA ADVATTAGGTLLA GDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDP+DYAIANAEGKAREVASRAL DAEGEGAEPIVVVGSDTIVDLDGVILEKP+DDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA
Sbjct: 1 MTSAQARPPAAAADVATTAGGTLLAQGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPRDYAIANAEGKAREVASRALLDAEGEGAEPIVVVGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA 239
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Inosine (triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ2_9STRA) HSP 1 Score: 246 bits (628), Expect = 2.100e-75 Identity = 132/223 (59.19%), Postives = 162/223 (72.65%), Query Frame = 1
Query: 184 ATTAGGTLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGK 852
AT TLLAH FM C +VLAS+SPRR EI G+MGL +R+ V+VSEFEE+L K+ F P DYA A A+ KA EVA++ L A + P +VVGSDTIV+LDG ILEKP D +HAF ML SLSGRRHLVHSGV++FT G + A + +TT V F A+S +EI AY+ + EPMDK+G+YGIQG GGQFV+ V+GCYFNVMGFPM F LA++I GK
Sbjct: 5 ATQQHSTLLAHKAFMDGCRVVLASKSPRRKEIFGLMGLDERLEVIVSEFEEDLRKADFPQPGDYAAATAKFKAAEVAAKVL-PARSDNR-PTIVVGSDTIVELDGTILEKPDDAQHAFRMLKSLSGRRHLVHSGVAVFTGACGSAQPAACWYDTTSVEFLAMSDDEIWAYVESGEPMDKAGAYGIQGLGGQFVKGVEGCYFNVMGFPMSKFGTCLAKLIESGK 225
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUT0_9STRA) HSP 1 Score: 226 bits (576), Expect = 9.190e-67 Identity = 131/229 (57.21%), Postives = 160/229 (69.87%), Query Frame = 1
Query: 202 TLLAHGDFM-SKCDLVLASQSPRRLEIVGMMGLADR--VRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAA---------VSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGK 852
T+L +++ S C +VLASQSPRR EI MMG+ + + VVVS FEENLDKSSF +P YA NAE KA++V ++ +R+ E A+ + VV +DTIVDL G ILEKP D++HAF MLS LSG HLVHSGV++FT + A VSF ETT+V LS +EI AYIRT EPMDKSGSYGIQG GGQFV+ V GCYFNVMGFPMH FS +AE+I+ K
Sbjct: 63 TILDRLEYLKSSCGIVLASQSPRRREIFDMMGINNSFDINVVVSNFEENLDKSSFDNPGIYAQINAECKAQDVYNQ-IRNDESRHAKSLAVVAADTIVDLRGKILEKPSDEQHAFQMLSELSGTSHLVHSGVALFTRPPVANSGASSEDIEPNIVSFYETTEVEIVPLSEDEIWAYIRTGEPMDKSGSYGIQGIGGQFVKGVRGCYFNVMGFPMHRFSAAMAELIQSKK 290
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Acetylserotonin (o-methyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAS6_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.830e-61 Identity = 128/250 (51.20%), Postives = 163/250 (65.20%), Query Frame = 1
Query: 160 PPAATADVATTAGGTLLAH-GDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVV-SEFEENLDKSSFKDPKDYAIANAEGKAREVASRAL--------------RDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDK-----AAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRD 846
P A +A + TLL + F +K +L+LAS+SPRR EI+ +MG + VV+ S+F E+LDK +F +P DYA NAE KA+EVA++ RDA G + +V+GSDTIVD DG+ILEKP+D +HA++MLSSLSGR HLVHSGV+I++SK K VSFCET +V F LS EEI YIR+ EPMDK+G YGIQG GGQ VR ++GCYF VMG PMH S LA+ D
Sbjct: 43 PLAMSAAAPSRTSSTLLPYLSIFKTKVNLILASKSPRRQEILQLMGFDSKDFVVLPSDFPEDLDKRNFINPADYAQKNAECKAQEVATKLFGGSSSGDVGKVGGQRDA---GKKTTIVIGSDTIVDRDGIILEKPEDAQHAYAMLSSLSGRTHLVHSGVAIYSSKGPKSGDGIPLPVVSFCETARVDFAPLSEEEIWNYIRSGEPMDKAGGYGIQGLGGQVVRGIEGCYFTVMGMPMHKLSVALAQFAED 289
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQE1_9STRA) HSP 1 Score: 208 bits (529), Expect = 8.620e-61 Identity = 117/220 (53.18%), Postives = 147/220 (66.82%), Query Frame = 1
Query: 202 TLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAA--VSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA 855
TLL GD VL S SPRR EI G+MGL + +VVS F E+L KSSF YA A KAREVA R L DA GA+P V+VGSDT+V++DG +LEKP D E A +ML +SGR H VHSGV++F++ G+D A ++F ETT+V F L+ +I Y+ +REPMDK+G YGIQG GGQ V + GCYFNVMGFPMH FS+ +AE++ A
Sbjct: 4 TLLGAGDAARSVRWVLGSASPRRAEIFGLMGL--QPEIVVSGFAEDLAKSSFATAAAYAEGTATEKAREVAGRLLPDA---GAQPTVIVGSDTVVEIDGDVLEKPGDVEEAKAMLRRMSGRNHFVHSGVAVFSNLGGRDAGAPTMTFAETTEVTFVELTELDIENYVASREPMDKAGGYGIQGLGGQMVCGLSGCYFNVMGFPMHRFSKSMAELLLTDNA 218
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U2_9STRA) HSP 1 Score: 208 bits (530), Expect = 2.150e-60 Identity = 116/213 (54.46%), Postives = 147/213 (69.01%), Query Frame = 1
Query: 220 DFMSKCDLVLASQSPRRLEIVGMMGLADRVR--VVVSEFEENLDKSSFKD---PKDYAIANAEGKAREVASRALRDAEGE-GAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVI 840
+ +S+C LVLAS+SPRR EI +MGL DRV +VVS+FEE+L KS F P+ Y A A GKAR VA + G A P+ VVG+DTIVDLDG +LEKP ++ A + L LSGR H VHS V+IF+S+ G + +SFCETT+V F LS EI AY+ + EPMDK+GSYGIQG GGQFV +++GCYFNVMG PM FS +A ++
Sbjct: 40 EALSRCRLVLASKSPRRREIFDLMGL-DRVGYDIVVSDFEEDLPKSDFPGEDGPQRYCEATATGKARSVAGKIFSQGSGTPSANPVFVVGADTIVDLDGEVLEKPSSEQDAAATLRRLSGRAHFVHSSVAIFSSRHGVAEPVISFCETTRVKFGQLSDAEISAYVASGEPMDKAGSYGIQGLGGQFVDQIEGCYFNVMGLPMRRFSTAIAGLV 251
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Maf (protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNE7_CHOCR) HSP 1 Score: 197 bits (501), Expect = 7.620e-57 Identity = 108/214 (50.47%), Postives = 144/214 (67.29%), Query Frame = 1
Query: 205 LLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRD 846
++ H + ++VLASQSPRR EI+ +MGL V S+FEENLDKSSFK P+DY +ANA GKA +VA+ + +V+GSDT+V LDG +LEKPK + AF ML+ LSGR+H V +GVS+ + K +F E T V F LS + I AYI+T EPMDK+G+YGIQG GG VR+++GCYF VMG PMHA +R +AE+ ++
Sbjct: 2 IMEHLPKLQTKNIVLASQSPRRREILTLMGLP--FTPVPSQFEENLDKSSFKSPRDYVMANAHGKAADVAA--------SQTDYDLVIGSDTVVVLDGKVLEKPKSEGEAFRMLAQLSGRQHTVATGVSL----IAKGDTTRTFAEETSVWFAHLSDDVIGAYIKTGEPMDKAGAYGIQGRGGALVRRIEGCYFTVMGLPMHALAREIAELCKE 201
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3D6_PORUM) HSP 1 Score: 197 bits (500), Expect = 1.660e-56 Identity = 110/206 (53.40%), Postives = 138/206 (66.99%), Query Frame = 1
Query: 241 LVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLG--KDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGK 852
+VLAS SPRR EI+ M+GLA V S FEENLDK +F P +YA NA KA V + L G G P +V+GSDTIV +DG ILEKP+ + A+ ML++LSGR H V S V++FT +DK A FCE T+V F LS E I AYIRT EPMDK+GSYGIQG GG F+ + GCY+NVMGFP+HAF+ +A ++ G+
Sbjct: 15 IVLASGSPRRREILTMLGLAHEVHA--SAFEENLDKGAFPTPAEYAKTNASSKAAAVVAE-LAAGGGAGRCPDLVIGSDTIVVVDGRILEKPRSEAAAYEMLATLSGREHSVLSAVALFTPSRSEVRDKPATVFCEHTRVRFAPLSPETIAAYIRTGEPMDKAGSYGIQGVGGSFITGITGCYYNVMGFPLHAFTSAVARLLDAGE 217
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNY9_9RHOD) HSP 1 Score: 197 bits (500), Expect = 2.010e-56 Identity = 112/218 (51.38%), Postives = 141/218 (64.68%), Query Frame = 1
Query: 196 GGTLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDG 849
G ++ H ++S +VLASQSPRR EI+ ++ L + VVVS FEENLDKS F P +Y + NA KA EVA R + G P +V+GSDT+V LD ILEKP + AF+ML SLS R H V + V++F K + SF E T V F L+ + I YIRTREPMDK+G+YGIQG GG V+ VDGCYFNVMGFPMH F+ LAE++ G
Sbjct: 13 GFMIVQHLPYLSSKRIVLASQSPRRREILDLLEL--KHDVVVSGFEENLDKSMFSHPSEYVLENARRKAEEVAKRLI----GSDTPPDLVIGSDTVVVLDNKILEKPLSEAEAFTMLKSLSNRNHTVLTSVALFLKDA--KKCSASFYEATNVRFAELNDDLIWEYIRTREPMDKAGAYGIQGIGGSLVKGVDGCYFNVMGFPMHRFATELAELVDRG 222
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLH8_VITBC) HSP 1 Score: 195 bits (496), Expect = 6.590e-55 Identity = 110/204 (53.92%), Postives = 137/204 (67.16%), Query Frame = 1
Query: 241 LVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALR---DAEGEGAEPI--VVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEV 837
++LAS+SPRR EI G+MGL V V S F E+LD +F P+ YA ANA KA EVA AL D E P VV+G+DTIVDLDGVILEKP + + A SMLS +SGR H VH+GV+IFT + G + F E+T+V F LS EI +Y+ + EPMDK+G YGIQG GG FV ++GCYFNVMG PMH S+ LA++
Sbjct: 87 VILASKSPRRKEICGLMGLD--VTVYPSTFAEDLDHGAFSSPQSYAAANAAHKAAEVARGALGAGGDDESSTCPPAADVVIGADTIVDLDGVILEKPANHDDAVSMLSRMSGRCHAVHTGVAIFTRRAGPAEPVAHFVESTKVKFAPLSRSEIDSYVASGEPMDKAGGYGIQGLGGMFVESIEGCYFNVMGLPMHHLSKVLAQL 288 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1080.706.1 >prot_Ecto-sp9_F_contig1080.706.1 ID=prot_Ecto-sp9_F_contig1080.706.1|Name=mRNA_Ecto-sp9_F_contig1080.706.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=280bp MVPVALRAAAAAILLGRESRAFLRSSVSLRVAARSSSVFRMASAQARPPAback to top mRNA from alignment at Ecto-sp9_F_contig1080:1375..4619+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1080.706.1 ID=mRNA_Ecto-sp9_F_contig1080.706.1|Name=mRNA_Ecto-sp9_F_contig1080.706.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3245bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1080:1375..4619+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1080:1375..4619+ >mRNA_Ecto-sp9_F_contig1080.706.1 ID=mRNA_Ecto-sp9_F_contig1080.706.1|Name=mRNA_Ecto-sp9_F_contig1080.706.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1680bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1080:1375..4619+ (Ectocarpus species9 EcSCA_722f female)back to top |