mRNA_Ecto-sp9_F_contig1080.706.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1080.706.1
Unique NamemRNA_Ecto-sp9_F_contig1080.706.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL60_ECTSI)

HSP 1 Score: 448 bits (1152), Expect = 2.850e-154
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 1
Query:  139 MASAQARPPAATADVATTAGGTLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA 855
            M SAQARPPAA ADVATTAGGTLLA GDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDP+DYAIANAEGKAREVASRAL DAEGEGAEPIVVVGSDTIVDLDGVILEKP+DDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA
Sbjct:    1 MTSAQARPPAAAADVATTAGGTLLAQGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPRDYAIANAEGKAREVASRALLDAEGEGAEPIVVVGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA 239          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Inosine (triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ2_9STRA)

HSP 1 Score: 246 bits (628), Expect = 2.100e-75
Identity = 132/223 (59.19%), Postives = 162/223 (72.65%), Query Frame = 1
Query:  184 ATTAGGTLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGK 852
            AT    TLLAH  FM  C +VLAS+SPRR EI G+MGL +R+ V+VSEFEE+L K+ F  P DYA A A+ KA EVA++ L  A  +   P +VVGSDTIV+LDG ILEKP D +HAF ML SLSGRRHLVHSGV++FT   G  + A  + +TT V F A+S +EI AY+ + EPMDK+G+YGIQG GGQFV+ V+GCYFNVMGFPM  F   LA++I  GK
Sbjct:    5 ATQQHSTLLAHKAFMDGCRVVLASKSPRRKEIFGLMGLDERLEVIVSEFEEDLRKADFPQPGDYAAATAKFKAAEVAAKVL-PARSDNR-PTIVVGSDTIVELDGTILEKPDDAQHAFRMLKSLSGRRHLVHSGVAVFTGACGSAQPAACWYDTTSVEFLAMSDDEIWAYVESGEPMDKAGAYGIQGLGGQFVKGVEGCYFNVMGFPMSKFGTCLAKLIESGK 225          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUT0_9STRA)

HSP 1 Score: 226 bits (576), Expect = 9.190e-67
Identity = 131/229 (57.21%), Postives = 160/229 (69.87%), Query Frame = 1
Query:  202 TLLAHGDFM-SKCDLVLASQSPRRLEIVGMMGLADR--VRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAA---------VSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGK 852
            T+L   +++ S C +VLASQSPRR EI  MMG+ +   + VVVS FEENLDKSSF +P  YA  NAE KA++V ++ +R+ E   A+ + VV +DTIVDL G ILEKP D++HAF MLS LSG  HLVHSGV++FT     +  A         VSF ETT+V    LS +EI AYIRT EPMDKSGSYGIQG GGQFV+ V GCYFNVMGFPMH FS  +AE+I+  K
Sbjct:   63 TILDRLEYLKSSCGIVLASQSPRRREIFDMMGINNSFDINVVVSNFEENLDKSSFDNPGIYAQINAECKAQDVYNQ-IRNDESRHAKSLAVVAADTIVDLRGKILEKPSDEQHAFQMLSELSGTSHLVHSGVALFTRPPVANSGASSEDIEPNIVSFYETTEVEIVPLSEDEIWAYIRTGEPMDKSGSYGIQGIGGQFVKGVRGCYFNVMGFPMHRFSAAMAELIQSKK 290          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Acetylserotonin (o-methyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAS6_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.830e-61
Identity = 128/250 (51.20%), Postives = 163/250 (65.20%), Query Frame = 1
Query:  160 PPAATADVATTAGGTLLAH-GDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVV-SEFEENLDKSSFKDPKDYAIANAEGKAREVASRAL--------------RDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDK-----AAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRD 846
            P A +A   +    TLL +   F +K +L+LAS+SPRR EI+ +MG   +  VV+ S+F E+LDK +F +P DYA  NAE KA+EVA++                RDA   G +  +V+GSDTIVD DG+ILEKP+D +HA++MLSSLSGR HLVHSGV+I++SK  K         VSFCET +V F  LS EEI  YIR+ EPMDK+G YGIQG GGQ VR ++GCYF VMG PMH  S  LA+   D
Sbjct:   43 PLAMSAAAPSRTSSTLLPYLSIFKTKVNLILASKSPRRQEILQLMGFDSKDFVVLPSDFPEDLDKRNFINPADYAQKNAECKAQEVATKLFGGSSSGDVGKVGGQRDA---GKKTTIVIGSDTIVDRDGIILEKPEDAQHAYAMLSSLSGRTHLVHSGVAIYSSKGPKSGDGIPLPVVSFCETARVDFAPLSEEEIWNYIRSGEPMDKAGGYGIQGLGGQVVRGIEGCYFTVMGMPMHKLSVALAQFAED 289          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQE1_9STRA)

HSP 1 Score: 208 bits (529), Expect = 8.620e-61
Identity = 117/220 (53.18%), Postives = 147/220 (66.82%), Query Frame = 1
Query:  202 TLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAA--VSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGKA 855
            TLL  GD       VL S SPRR EI G+MGL  +  +VVS F E+L KSSF     YA   A  KAREVA R L DA   GA+P V+VGSDT+V++DG +LEKP D E A +ML  +SGR H VHSGV++F++  G+D  A  ++F ETT+V F  L+  +I  Y+ +REPMDK+G YGIQG GGQ V  + GCYFNVMGFPMH FS+ +AE++    A
Sbjct:    4 TLLGAGDAARSVRWVLGSASPRRAEIFGLMGL--QPEIVVSGFAEDLAKSSFATAAAYAEGTATEKAREVAGRLLPDA---GAQPTVIVGSDTVVEIDGDVLEKPGDVEEAKAMLRRMSGRNHFVHSGVAVFSNLGGRDAGAPTMTFAETTEVTFVELTELDIENYVASREPMDKAGGYGIQGLGGQMVCGLSGCYFNVMGFPMHRFSKSMAELLLTDNA 218          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U2_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.150e-60
Identity = 116/213 (54.46%), Postives = 147/213 (69.01%), Query Frame = 1
Query:  220 DFMSKCDLVLASQSPRRLEIVGMMGLADRVR--VVVSEFEENLDKSSFKD---PKDYAIANAEGKAREVASRALRDAEGE-GAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVI 840
            + +S+C LVLAS+SPRR EI  +MGL DRV   +VVS+FEE+L KS F     P+ Y  A A GKAR VA +      G   A P+ VVG+DTIVDLDG +LEKP  ++ A + L  LSGR H VHS V+IF+S+ G  +  +SFCETT+V F  LS  EI AY+ + EPMDK+GSYGIQG GGQFV +++GCYFNVMG PM  FS  +A ++
Sbjct:   40 EALSRCRLVLASKSPRRREIFDLMGL-DRVGYDIVVSDFEEDLPKSDFPGEDGPQRYCEATATGKARSVAGKIFSQGSGTPSANPVFVVGADTIVDLDGEVLEKPSSEQDAAATLRRLSGRAHFVHSSVAIFSSRHGVAEPVISFCETTRVKFGQLSDAEISAYVASGEPMDKAGSYGIQGLGGQFVDQIEGCYFNVMGLPMRRFSTAIAGLV 251          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Maf (protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNE7_CHOCR)

HSP 1 Score: 197 bits (501), Expect = 7.620e-57
Identity = 108/214 (50.47%), Postives = 144/214 (67.29%), Query Frame = 1
Query:  205 LLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRD 846
            ++ H   +   ++VLASQSPRR EI+ +MGL      V S+FEENLDKSSFK P+DY +ANA GKA +VA+           +  +V+GSDT+V LDG +LEKPK +  AF ML+ LSGR+H V +GVS+    + K     +F E T V F  LS + I AYI+T EPMDK+G+YGIQG GG  VR+++GCYF VMG PMHA +R +AE+ ++
Sbjct:    2 IMEHLPKLQTKNIVLASQSPRRREILTLMGLP--FTPVPSQFEENLDKSSFKSPRDYVMANAHGKAADVAA--------SQTDYDLVIGSDTVVVLDGKVLEKPKSEGEAFRMLAQLSGRQHTVATGVSL----IAKGDTTRTFAEETSVWFAHLSDDVIGAYIKTGEPMDKAGAYGIQGRGGALVRRIEGCYFTVMGLPMHALAREIAELCKE 201          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3D6_PORUM)

HSP 1 Score: 197 bits (500), Expect = 1.660e-56
Identity = 110/206 (53.40%), Postives = 138/206 (66.99%), Query Frame = 1
Query:  241 LVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLG--KDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDGK 852
            +VLAS SPRR EI+ M+GLA  V    S FEENLDK +F  P +YA  NA  KA  V +  L    G G  P +V+GSDTIV +DG ILEKP+ +  A+ ML++LSGR H V S V++FT      +DK A  FCE T+V F  LS E I AYIRT EPMDK+GSYGIQG GG F+  + GCY+NVMGFP+HAF+  +A ++  G+
Sbjct:   15 IVLASGSPRRREILTMLGLAHEVHA--SAFEENLDKGAFPTPAEYAKTNASSKAAAVVAE-LAAGGGAGRCPDLVIGSDTIVVVDGRILEKPRSEAAAYEMLATLSGREHSVLSAVALFTPSRSEVRDKPATVFCEHTRVRFAPLSPETIAAYIRTGEPMDKAGSYGIQGVGGSFITGITGCYYNVMGFPLHAFTSAVARLLDAGE 217          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNY9_9RHOD)

HSP 1 Score: 197 bits (500), Expect = 2.010e-56
Identity = 112/218 (51.38%), Postives = 141/218 (64.68%), Query Frame = 1
Query:  196 GGTLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEVIRDG 849
            G  ++ H  ++S   +VLASQSPRR EI+ ++ L  +  VVVS FEENLDKS F  P +Y + NA  KA EVA R +    G    P +V+GSDT+V LD  ILEKP  +  AF+ML SLS R H V + V++F       K + SF E T V F  L+ + I  YIRTREPMDK+G+YGIQG GG  V+ VDGCYFNVMGFPMH F+  LAE++  G
Sbjct:   13 GFMIVQHLPYLSSKRIVLASQSPRRREILDLLEL--KHDVVVSGFEENLDKSMFSHPSEYVLENARRKAEEVAKRLI----GSDTPPDLVIGSDTVVVLDNKILEKPLSEAEAFTMLKSLSNRNHTVLTSVALFLKDA--KKCSASFYEATNVRFAELNDDLIWEYIRTREPMDKAGAYGIQGIGGSLVKGVDGCYFNVMGFPMHRFATELAELVDRG 222          
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLH8_VITBC)

HSP 1 Score: 195 bits (496), Expect = 6.590e-55
Identity = 110/204 (53.92%), Postives = 137/204 (67.16%), Query Frame = 1
Query:  241 LVLASQSPRRLEIVGMMGLADRVRVVVSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALR---DAEGEGAEPI--VVVGSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRKVDGCYFNVMGFPMHAFSRRLAEV 837
            ++LAS+SPRR EI G+MGL   V V  S F E+LD  +F  P+ YA ANA  KA EVA  AL    D E     P   VV+G+DTIVDLDGVILEKP + + A SMLS +SGR H VH+GV+IFT + G  +    F E+T+V F  LS  EI +Y+ + EPMDK+G YGIQG GG FV  ++GCYFNVMG PMH  S+ LA++
Sbjct:   87 VILASKSPRRKEICGLMGLD--VTVYPSTFAEDLDHGAFSSPQSYAAANAAHKAAEVARGALGAGGDDESSTCPPAADVVIGADTIVDLDGVILEKPANHDDAVSMLSRMSGRCHAVHTGVAIFTRRAGPAEPVAHFVESTKVKFAPLSRSEIDSYVASGEPMDKAGGYGIQGLGGMFVESIEGCYFNVMGLPMHHLSKVLAQL 288          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1080.706.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.850e-15497.49protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL60... [more]
Inosine2.100e-7559.19triphosphate pyrophosphatase-like protein n=1 Tax=... [more]
Hypothetical9.190e-6757.21protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Acetylserotonin2.830e-6151.20o-methyltransferase n=3 Tax=Monodopsidaceae TaxID=... [more]
Hypothetical8.620e-6153.18protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical2.150e-6054.46protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Maf7.620e-5750.47protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=... [more]
Uncharacterized1.660e-5653.40protein n=1 Tax=Porphyra umbilicalis TaxID=2786 Re... [more]
Hypothetical2.010e-5651.38protein n=2 Tax=Rhodosorus marinus TaxID=101924 Re... [more]
Uncharacterized6.590e-5553.92protein n=2 Tax=Vitrella brassicaformis TaxID=1169... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1080contigEcto-sp9_F_contig1080:1375..4619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.4
Seed ortholog evalue7.9e-125
Seed eggNOG ortholog2880.D8LL60
Preferred nameASMTL
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K06287
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
EC6.1.1.3
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionMaf-like protein
Ec32 orthologEc-25_000130.1
Exons7
Model size1530
Cds size840
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928300.9522443-UTR-Ecto-sp9_F_contig1080:1374..13921622928300.9522443-UTR-Ecto-sp9_F_contig1080:1374..1392Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1080 1375..1392 +
1692277827.0763445-UTR-Ecto-sp9_F_contig1080:1374..13921692277827.0763445-UTR-Ecto-sp9_F_contig1080:1374..1392Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1080 1375..1392 +
1622928301.082928-UTR-Ecto-sp9_F_contig1080:3947..46191622928301.082928-UTR-Ecto-sp9_F_contig1080:3947..4619Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1080 3948..4619 +
1692277827.152672-UTR-Ecto-sp9_F_contig1080:3947..46191692277827.152672-UTR-Ecto-sp9_F_contig1080:3947..4619Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1080 3948..4619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928300.9703915-CDS-Ecto-sp9_F_contig1080:1392..15201622928300.9703915-CDS-Ecto-sp9_F_contig1080:1392..1520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 1393..1520 +
1692277827.0900583-CDS-Ecto-sp9_F_contig1080:1392..15201692277827.0900583-CDS-Ecto-sp9_F_contig1080:1392..1520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 1393..1520 +
1622928300.9823682-CDS-Ecto-sp9_F_contig1080:2149..23031622928300.9823682-CDS-Ecto-sp9_F_contig1080:2149..2303Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 2150..2303 +
1692277827.0969884-CDS-Ecto-sp9_F_contig1080:2149..23031692277827.0969884-CDS-Ecto-sp9_F_contig1080:2149..2303Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 2150..2303 +
1622928300.999316-CDS-Ecto-sp9_F_contig1080:2412..25201622928300.999316-CDS-Ecto-sp9_F_contig1080:2412..2520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 2413..2520 +
1692277827.104045-CDS-Ecto-sp9_F_contig1080:2412..25201692277827.104045-CDS-Ecto-sp9_F_contig1080:2412..2520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 2413..2520 +
1622928301.0167341-CDS-Ecto-sp9_F_contig1080:2907..29881622928301.0167341-CDS-Ecto-sp9_F_contig1080:2907..2988Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 2908..2988 +
1692277827.1199193-CDS-Ecto-sp9_F_contig1080:2907..29881692277827.1199193-CDS-Ecto-sp9_F_contig1080:2907..2988Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 2908..2988 +
1622928301.0335572-CDS-Ecto-sp9_F_contig1080:3199..34081622928301.0335572-CDS-Ecto-sp9_F_contig1080:3199..3408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 3200..3408 +
1692277827.1285403-CDS-Ecto-sp9_F_contig1080:3199..34081692277827.1285403-CDS-Ecto-sp9_F_contig1080:3199..3408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 3200..3408 +
1622928301.0510273-CDS-Ecto-sp9_F_contig1080:3625..37031622928301.0510273-CDS-Ecto-sp9_F_contig1080:3625..3703Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 3626..3703 +
1692277827.1364408-CDS-Ecto-sp9_F_contig1080:3625..37031692277827.1364408-CDS-Ecto-sp9_F_contig1080:3625..3703Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 3626..3703 +
1622928301.0683608-CDS-Ecto-sp9_F_contig1080:3865..39471622928301.0683608-CDS-Ecto-sp9_F_contig1080:3865..3947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 3866..3947 +
1692277827.1442413-CDS-Ecto-sp9_F_contig1080:3865..39471692277827.1442413-CDS-Ecto-sp9_F_contig1080:3865..3947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1080 3866..3947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1080.706.1prot_Ecto-sp9_F_contig1080.706.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1080 1393..3947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1080.706.1

>prot_Ecto-sp9_F_contig1080.706.1 ID=prot_Ecto-sp9_F_contig1080.706.1|Name=mRNA_Ecto-sp9_F_contig1080.706.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=280bp
MVPVALRAAAAAILLGRESRAFLRSSVSLRVAARSSSVFRMASAQARPPA
ATADVATTAGGTLLAHGDFMSKCDLVLASQSPRRLEIVGMMGLADRVRVV
VSEFEENLDKSSFKDPKDYAIANAEGKAREVASRALRDAEGEGAEPIVVV
GSDTIVDLDGVILEKPKDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKD
KAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSYGIQGEGGQFVRK
VDGCYFNVMGFPMHAFSRRLAEVIRDGKA*
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mRNA from alignment at Ecto-sp9_F_contig1080:1375..4619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1080.706.1 ID=mRNA_Ecto-sp9_F_contig1080.706.1|Name=mRNA_Ecto-sp9_F_contig1080.706.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3245bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1080:1375..4619+ (Ectocarpus species9 EcSCA_722f female)
TTTGAAATTGAAATTCCCATGGTGCCCGTTGCGCTCAGGGCAGCAGCGGC AGCGATACTGCTGGGAAGGGAGAGCCGAGCTTTTTTGAGATCCTCTGTGT CTCTGCGCGTAGCGGCCAGGAGTTCGTCAGTTTTCAGAATGGCAAGGTCA GCGGATGCTCTCATGAGTGGCGTGGATATGTTGACTTTGCAGCTTTGCAG AGCAGTGCATGGGGGGCGATCCAAGTTCGTCAATGAACACCATAGCACAG AAGAGCAGGTGCTGGGGTGGCGGTTGCGGTATCCTTGTGTGATTGTACGT GCTGCTTGTAGAGGCGAATGGGCCGTTCCCTGTGACCGCTTCGGTTCCCG GAGCTTCGAGGTTGAAGCGTGAGGGTCCCGCCGCCGCCGTCGCCGTCCTT TCCTGTTACTCGATTCTACCTGGCACACCATCCTCGTAGTATATAGACAT ATTCTACCACCGTTTGCGATGGCATTCTTATTGGTGTGGAGTTAATAAGC CTTCTGATTGCCCGGGTGCTACGAGCTACAGCAGTAGCTTGCACCCGATC CATGCGTTGCAGTACAAGGTCCATGACCACCTGCCATCATTCGGCAGACC TCGACGTTTTCCGCGAGGCCGTGGTTGTGTGCGGGCAACCATGCCTACGT TGCCATCTCAAGATTCGTACCTGGAATTCTTCCACTTGGATGTGCGTGCT TTCGTTCTAAAATGGCATCGCGAATATGTGTAACGCCGCGTGATGTTGCC TCCTCCGTTCCCATGCCTCCTGTAGCGCTCAGGCGAGGCCGCCTGCCGCG ACTGCCGACGTGGCCACAACAGCAGGAGGGACACTGCTCGCCCATGGCGA CTTCATGTCCAAGTGTGACCTGGTGCTCGCCAGCCAGAGTCCAAGACGCC TGGAGATCGTGGGCATGATGGGACTGGCGGTAAGAACAACGGGGCTTCTC TCTTTCGACACTTGTCCGCGCTTCTTAGGTGCTTGCAACCAACCTCAACT GCCCTGCGCGGGTCGGTGTGCGGGTGATTGTTCGGCAGGATCGTGTTCGT GTGGTCGTCTCCGAGTTTGAGGAGAATCTGGACAAGTCATCTTTCAAGGA CCCCAAGGACTATGCGATTGCCAACGCGGAAGGCAAAGCGAGAGAGGTAT GCACACGCGGTACGACAGGGGGAGGAGAGCACTAACACACCGCTGTAGTT GAGACGTTGCATGAATCCCTGAAGAGGGGGATTGCGACTCCGCTCTGAGC CACGCCGGAAAGCGACCGCTGTGCCGGTAGCATCATGACCTCTCCAATCT CCGTGCATCACAGCAGTCAGTCGGACCGCACGTCGTGCGTGCACAGCATG CGGTGGTTGTTCCACGTGTAGCTTGACGAGGATTTTGAGCTTTGGTGCCG GTAAGAGCGGCTTGGTAAGTAAGAGCACAGCAGGAACCAAGCGGGATGAG GGAGCATCGCATGGCTGTACCGCACTCTTGGCGCGGTGAAAGTTGGAAAA AAAAACACTTGTTCGTTTCGCTTGCTGAAACAGGTGGCAAGTCGCGCGTT GCGGGATGCAGAAGGCGAGGGAGCAGAGCCCATCGTGGTGGTGGGATCGG ACACAATTGTTGATGTGAGCGCTGTTATCGCTTGTAACCGGGTGTAGGAG GATGCCTACAGCAGCAGTTGTAACGGAACGGCAGTAGTGGTCGAATAGGA CCGCTGGATGGTGCTGTCCTCGGTGGTTTTCTGGCCATGCTCTTTGTGAT ATCTATCTCCGTAATGTACTCTTGCGTGGTATCCAAATGGTTTAAATGTT GCAATCTTTGTGCTTTTCTTACCAGTTGGACGGCGTTATCCTAGAAAAGC CCAAGGATGATGAGCACGCGTTCTCGATGCTCAGCTCTTTGAGCGGTCGG CGGCACCTGGTGCACTCAGGCGTGAGCATTTTTACCAGCAAACTGGGCAA GGACAAAGCGGCGGTGAGCTTTTGCGAGACGACCCAAGTGCTCTTCACGG CACTATCGGCCGAGGAGATTCGCGCTTATATTCGGTGAGCAATTAAGCCG TCCGAATGAACGGCGTTTTGGCCTTTGCAACGTCTTTGTGTTCAGGTGTG TTGGCAAGGGACCGGGTTGTGTTGGTTACACTGGTTCACTGTCATGAAAC ACTCACACTGCGGTCCATACACTGTCAAGCTCGTGTTCAGAATGAGATGG CCATGTTACGTTCGCCTATCATGCTGTTGTATCGATGAAACGTTGACGCA GGACACGAGAGCCGATGGACAAGTCTGGGTCATACGGCATACAGGGGGAA GGTGGACAATTCGTGCGCAAGGTGGACGGGTGAGTGGGCATATGAAGTGA AATGTTTTTCAAGTGTGGTGCGTCAACGTTTGCGTAGCGGTTAGAAGGTC TTGCATGATTCACGCACGGGTTATGAGTCATGGATGATTGGCTCAACTTC ACAGACCCGTCCGCTCTTGCCTTCTGCGCCTGTCTTCACAGGTGCTACTT TAACGTGATGGGGTTCCCGATGCACGCCTTCTCGAGACGTTTAGCAGAGG TCATCCGAGACGGGAAGGCATGATGTAGCGCTAACACCCACCTGCATGTG ACATCGCTTTGAGTGAATGCGTGAGTAATGACTTTCGCTTATGGGCGACC CTTGTGTGGAGTGTTTTTTTTTCCCCTCGCTGATTTCAGTCTGTGCCACG AAAAGCCCGTTCCGCAAAACTAAACGTCAACAAAATGCAGACTAGGCTTG CGTTTTCCGAGTGTTTTGTATCATCTGATCGTGGGAAGGACTGTTTTACT CTGGATGTGGTATTTCGGGAACCCGTGTGAGCGTTTCGGTTGGCCGTTGC TTGTCCCGAACTGAGGGTACTTTCGCGTTGGGGAGCGGGTACCTTCGCTC TGGGGAGAACTTGTGTCTACTTAGAGGTTCGTGCGGTCAGGTTAGGCACG CGGCCACAACGTTGGTCTTATCTTTGAATGCAATGGTACATTGGAGATGC TGCTGCTTTCCACATAGATTGCGGAGGTGAAGTTCCAGTCGTCATCCTCA GTAGCTGTAGAAAAGGGGGCGTTTAAATAGAAGCTTTCCGAGAACGAGGT ACGTTGACGAAGTTGAGTCAAGTGATTCTCGTCCCCGGCAGGAACACCGC TGGCGGCTTCCGAGCGCATCGATGCTCCGTGGATGGACGCTGGGTCCACA CAACCACGACCCAAGCTCCCGGTCAATCTCGACCAAGGAACACGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1080:1375..4619+

>mRNA_Ecto-sp9_F_contig1080.706.1 ID=mRNA_Ecto-sp9_F_contig1080.706.1|Name=mRNA_Ecto-sp9_F_contig1080.706.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1680bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1080:1375..4619+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGCCCGTTGCGCTCAGGGCAGCAGCGGCAGCGATACTGCTGGGAAG
GGAGAGCCGAGCTTTTTTGAGATCCTCTGTGTCTCTGCGCGTAGCGGCCA
GGAGTTCGTCAGTTTTCAGAATGGCAAGATGGTGCCCGTTGCGCTCAGGG
CAGCAGCGGCAGCGATACTGCTGGGAAGGGAGAGCCGAGCTTTTTTGAGA
TCCTCTGTGTCTCTGCGCGTAGCGGCCAGGAGTTCGTCAGTTTTCAGAAT
GGCAAGCGCTCAGGCGAGGCCGCCTGCCGCGACTGCCGACGTGGCCACAA
CAGCAGGAGGGACACTGCTCGCCCATGGCGACTTCATGTCCAAGTGTGAC
CTGGTGCTCGCCAGCCAGAGTCCAAGACGCCTGGAGATCGTGGGCATGAT
GGGACTGGCGCGCTCAGGCGAGGCCGCCTGCCGCGACTGCCGACGTGGCC
ACAACAGCAGGAGGGACACTGCTCGCCCATGGCGACTTCATGTCCAAGTG
TGACCTGGTGCTCGCCAGCCAGAGTCCAAGACGCCTGGAGATCGTGGGCA
TGATGGGACTGGCGGATCGTGTTCGTGTGGTCGTCTCCGAGTTTGAGGAG
AATCTGGACAAGTCATCTTTCAAGGACCCCAAGGACTATGCGATTGCCAA
CGCGGAAGGCAAAGCGAGAGAGGATCGTGTTCGTGTGGTCGTCTCCGAGT
TTGAGGAGAATCTGGACAAGTCATCTTTCAAGGACCCCAAGGACTATGCG
ATTGCCAACGCGGAAGGCAAAGCGAGAGAGGTGGCAAGTCGCGCGTTGCG
GGATGCAGAAGGCGAGGGAGCAGAGCCCATCGTGGTGGTGGGATCGGACA
CAATTGTTGATGTGGCAAGTCGCGCGTTGCGGGATGCAGAAGGCGAGGGA
GCAGAGCCCATCGTGGTGGTGGGATCGGACACAATTGTTGATTTGGACGG
CGTTATCCTAGAAAAGCCCAAGGATGATGAGCACGCGTTCTCGATGCTCA
GCTCTTTGAGCGGTCGGCGGCACCTGGTGCACTCAGGCGTGAGCATTTTT
ACCAGCAAACTGGGCAAGGACAAAGCGGCGGTGAGCTTTTGCGAGACGAC
CCAAGTGCTCTTCACGGCACTATCGGCCGAGGAGATTCGCGCTTATATTC
GTTGGACGGCGTTATCCTAGAAAAGCCCAAGGATGATGAGCACGCGTTCT
CGATGCTCAGCTCTTTGAGCGGTCGGCGGCACCTGGTGCACTCAGGCGTG
AGCATTTTTACCAGCAAACTGGGCAAGGACAAAGCGGCGGTGAGCTTTTG
CGAGACGACCCAAGTGCTCTTCACGGCACTATCGGCCGAGGAGATTCGCG
CTTATATTCGGACACGAGAGCCGATGGACAAGTCTGGGTCATACGGCATA
CAGGGGGAAGGTGGACAATTCGTGCGCAAGGTGGACGGGACACGAGAGCC
GATGGACAAGTCTGGGTCATACGGCATACAGGGGGAAGGTGGACAATTCG
TGCGCAAGGTGGACGGGTGCTACTTTAACGTGATGGGGTTCCCGATGCAC
GCCTTCTCGAGACGTTTAGCAGAGGTCATCCGAGACGGGAAGGCATGAGT
GCTACTTTAACGTGATGGGGTTCCCGATGCACGCCTTCTCGAGACGTTTA
GCAGAGGTCATCCGAGACGGGAAGGCATGA
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