mRNA_Ecto-sp9_F_contig108.704.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2E0S7X7_9BACT) HSP 1 Score: 62.4 bits (150), Expect = 6.080e-7 Identity = 59/217 (27.19%), Postives = 97/217 (44.70%), Query Frame = 1
Query: 10 LLLNYKFQSNTNIGEDSSGNGVDITNNAGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGILGNSPRTFSVWIYLAD----------SNNNGNIFVYGSTESSFRFVWRQSSRTVMVAFPPFFEIGTIEIPVDSWAHVAVTFDASDNTMKTYVNGVV---DLSFSFPTINTGSGPF-ALGRSALNGNLPVYEGYLTDFRAYDDALDAVAVAGLH 618
L+ +YKF NTN+G DSSGNG D+T G V + FG +SS T + + S N + + W Y D S+ N ++ + +++S ++ + S + V G ++ W H+ D S + + NGV D S S ++ G G + + + ++ ++ ++GYL DFR YD AL A V L+
Sbjct: 459 LIAHYKFDDNTNVGLDSSGNGYDLTARDGTVQLSSTEYVFG-------SSSYYTNDSLETSSFTFHNKAFSVAFWAYQTDYGFILTQRKASSTNQHLHIGYTSDSGGKYQFAFYSNDLTV--------GGYSGDLNQWVHLVFQIDTSAK-REIWRNGVRIANDTSASSAFLDLGGGTYDVVIATRVDNSVSWFDGYLDDFRIYDRALSAAEVEKLY 659
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: LamGL (domain-containing protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7V6HIF4_9BACT) HSP 1 Score: 62.0 bits (149), Expect = 6.810e-7 Identity = 65/237 (27.43%), Postives = 104/237 (43.88%), Query Frame = 1
Query: 10 LLLNYKFQSNTNIGEDSSGNGVDITNNAGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGILGNSPRTFSVWIYLADSNNNGNIFVY---GSTESSFRFVWRQSSRT-VMVA-------FPPFFEIGTIEIPVDSWAHVAVTFDASDNTMKTYVNGVVDLSFS-FPTINTGSGPFALGRSALNGNLPVYEGYLTDFRAYDDALDAVAVAGLHSDGPLDLFKIVFEATMYTHLAD 684
L +Y+F +N+G+DSSGNG D+T ++ A G FG ASF + A + + GNS T + W L N + VY G+ + ++R +S T +M A +++ + + P W H+ T+DA+ + + Y NG + + + G F LG A G Y+G L + ++ ALD VA D+ +F A + LAD
Sbjct: 264 LQAHYRFDDESNLGKDSSGNGYDLTASSAPAFAP---GLFGGAASFTAADKTYFYAQTFPATLPTGNSSYTVAAWCNLKAGGNIRGMPVYWGRGNNTDNGSVLFRFNSTTEIMTANMGNNWTVKAGYDLAS-DTPDGGWHHIVCTYDAATHEQRVYFNGTRAAQRTIWADLTVGDNTFWLG-GAPYGTANYYDGLLDEVMIFNRALDDAEVA--------DVATGLFAAPRGSRLAD 487
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: PKD (domain-containing protein n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9WA58_9CHLR) HSP 1 Score: 60.5 bits (145), Expect = 8.400e-7 Identity = 54/203 (26.60%), Postives = 86/203 (42.36%), Query Frame = 1
Query: 55 DSSGNGVDITNNAGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGILGNSPRTFSVWIYLADSNNN---GNIFVYGSTESSFRFVWRQSSRTVMVAFPPFFEI------GTIEIPVDSWAHVAVTFDASDNTMKTYVNGVVDL--SFSFPTINTGSGPFALGRSALNGNLPVY-EGYLTDFRAYDDALDAVAVAGLHSDG 627
D + NG D+T G T GQ A + A + +G+ T + WI LA N + +G ++R +R + P ++ G + D W HVA FD+ TM+ Y++G+++ + ++ TI T + PF LG + NGN+ Y +GYL D+ Y AL + L G
Sbjct: 84 DYTANGNDLTAVQGTTVVT---GQVNLGAKLQDDYQQYLMIADEDQTGLNIAGDLTIAGWINLASKNKYMVLAGKYEWGVQNRAYRLSLIDDNRLQVTISPDGRQLASYMLDGQTALRTDYWYHVAAVFDSQAQTMRLYLDGMLEAERTVNYSTIYTSTAPFMLGANVQNGNVVQYFDGYLDDWWVYGMALSQFEIESLRRRG 283
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: LamG (domain-containing protein n=1 Tax=Ralstonia sp. ASV6 TaxID=2795124 RepID=UPI0018EC2F29) HSP 1 Score: 60.1 bits (144), Expect = 3.140e-6 Identity = 39/121 (32.23%), Postives = 61/121 (50.41%), Query Frame = 1
Query: 220 TFSVWIYLADSNNNGNIFVYGSTESSFRFVWRQSSRTVMVAF---PPFFEIGTIEIPVDSWAHVAVTFDASDNTMKTYVNGVVDLSFSFPTINTGSGPFALGRSALNGNLPVYEGYLTDFR 573
T W YL +N +G+ ++ + S+ W VAF G++ +P WAH+AV+FD+S NT++T+VNGV+DL+ +N+ + A SA + GYL D R
Sbjct: 750 TVECWAYL--NNTSGDPYLVTANSSNGSGRWAMQVLGGKVAFYSGGSGNNAGSVSVPTGQWAHLAVSFDSSTNTIRTFVNGVMDLNAVVSLVNSSAPMRAEIGSAFFNSSNYANGYLDDIR 868
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: LamGL (domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1UDV6_9ZZZZ) HSP 1 Score: 58.5 bits (140), Expect = 3.210e-6 Identity = 57/195 (29.23%), Postives = 90/195 (46.15%), Query Frame = 1
Query: 55 DSSGNGVDITN--NAGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGILGNSPRTFSVWIYLADSNNNGNIFVYGSTESSFRFVWRQSSRTVMVAFPP----FFEIGTIEIPVDSWAHVAVTFDASDNTMKTYVNGV-VDLSFSFPTINTGSGPFALGRSALNGNLPVYEGYLTDFRAYDDALDAVAVAGLH 618
DSSGNG D T+ N ++S T G+ +F+GTS + + ++G T W+ A + N+ S++ S F W SSR+ + + ++++ VD W HVAVTFD + M Y NGV +D + PT N + + +GR N + G L D +D AL ++ L+
Sbjct: 77 DSSGNGNDGTSQQNTDILSTT---GRIDGALTFNGTSDYVDVGP------VIGTGAYTKVAWVKRASGDFYNNMI---SSDVSSHFFWIPSSRSFKLTAGHNTDYYIVQDSVQLDVDVWYHVAVTFDPTGGDMVLYKNGVAIDSATGAPTQNPSNATY-IGRYMNGYN---FGGSLDDVMVFDRALSPDEISELY 255
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: Uncharacterized (protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2E7CL04_9PROT) HSP 1 Score: 59.3 bits (142), Expect = 5.650e-6 Identity = 43/160 (26.88%), Postives = 75/160 (46.88%), Query Frame = 1
Query: 142 SFDGTSSSLTLAASDVPSGILGNSPRTFSVWIYLADSNNNGNIFVYGSTESS-----FRFVWRQSSRTVMVAFPPFFEIGTIEIPVDSWAHVAVTFDASDNTMKTYVNGVVDLSFSFPTINTGSGPFALGRSALNGNLPVYEGYLTDFRAYDDALDAVAV 606
SFDG + L L D+PSG N+PR+F+VW Y+ + ++ GNIF YG+ F + S ++ + I + +W H A+TF+ S T+ YV+G + S + GS P + + + ++G ++ ++ L + V
Sbjct: 972 SFDGNNDRLLLTHPDLPSG---NNPRSFTVWAYVENQSDLGNIFSYGNASHQTPNQRFSLIAETGSGSLRFSGQNNDHFYGTTIQLQTWHHFALTFNGS--TLSLYVDGTLATSTNTNLNTDGSYPMVVASNTPTRDDEYFKGKISRLSMWNHELTSTEV 1126
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: LamG (domain-containing protein n=3 Tax=Nonomuraea TaxID=83681 RepID=A0A5S4FA62_9ACTN) HSP 1 Score: 58.5 bits (140), Expect = 6.370e-6 Identity = 56/197 (28.43%), Postives = 92/197 (46.70%), Query Frame = 1
Query: 55 DSSGNGVDITNNAGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGILGNSPRTFSVWIYLADSNNNGNIFV-----------YGSTESS-FRFVWRQSSRTVMVAFPPFFEIGTIEIPVDSWAHVAVTFDASDNTMKTYVNGV-VDLSFSFPTINTGSGPFALGRSALNGNLPVYEGYLTDFRAYDDALDAVAV 606
DSSG G NN SAT +G++G SF+GTSS +T+A S S + S T W+ A + + + GS S F++ S ++PV++W+HVA T+D S T++ +VNG V + + ++ TG+ P +G ++ +G + G + + R Y+ AL A +
Sbjct: 248 DSSGTG----NNGTATSATWAVGKYGQALSFNGTSSWVTVADS---SSLRLTSGMTLEAWVRPASVSGWRTVLMKEFGADLAYALMGSGGSGPGAFIFTSSGANAQAVS---------DLPVNTWSHVAATYDGS--TLRMFVNGTQVATNPTVGSLRTGTSPLRIGGNSGSGEY--FSGLIDEVRIYNKALTAAQI 424
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5NI23_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 9.720e-6 Identity = 52/199 (26.13%), Postives = 95/199 (47.74%), Query Frame = 1
Query: 55 DSSGNGVD--ITNNAGVVSATDPLGQFGDVASFDGTS-------SSLTLAASDVPSGILGNSPRTFSVWIYLADSNNNGNIFVYGSTESSFRFVWRQSSRTVMVAFPPFFEI-GTIEIPVDSWAHVAVTFDASDNTMKTYVNGVVDLSFSFPT-INTGSGPFALGRS-ALNGNLPVYEGYLTDFRAYDDALDAVAVAGL 615
DSSGNG + + NN VS G+ G + DGTS S+L L + T S+W+Y + +N G +F + S + +++ + ++ T ++P+++W H+A T+D + K Y+NG+++ + S+ +NT + P +G + + +P G + D R Y+ AL + +A L
Sbjct: 122 DSSGNGNNGSLENNPTWVS-----GKIGQALNCDGTSRVNIPDSSTLDLTGA-----------MTISLWLYPTNVSNKGILFKGPLSSSQGVYALIANTKALFRLNGAASDVYATSDLPLNTWTHIAATYDPAQAQQKIYINGILENTVSYSAAVNTNNDPLYIGMYYSTSYGIP---GTIDDVRVYNRALSSAEIAAL 301
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: HYR (domain-containing protein n=1 Tax=Psychroflexus sp. ALD_RP9 TaxID=2777186 RepID=UPI001A8DC621) HSP 1 Score: 57.4 bits (137), Expect = 2.440e-5 Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 376 IPVDSWAHVAVTFDASDNTMKTYVNGVVDLSFSFPTINTGSGP--FALGRSALNGNLPVYEGYLTDFRAYDDALDAVAVAGLHSDGPLDLFKIVFEATMYTHLADVSWNSVFG 708
I ++ W HVAV++++S++TMK Y+ G+ S + T N + P F +G + GN ++GY+ +FRA+++ALD V ++ A T L ++NS FG
Sbjct: 1355 ITLNQWQHVAVSYNSSNSTMKIYIEGIEVASTTLNTSNPTASPGLFRIGAAENGGNQ--FDGYMDNFRAWENALDTSEVFAAKNNN--------LSAVNNTLLLHYAFNSNFG 1457
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Match: Fibronectin (type-III domain-containing protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8GPH1_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 3.750e-5 Identity = 54/190 (28.42%), Postives = 92/190 (48.42%), Query Frame = 1
Query: 55 DSSGNGVDITNNAGVVSATDPLGQFGDVASFDGTSSSLTLAASDVPSGILGNSPRTFSVWIYLADSNNNGNIFVYGSTESSFRFVWR-----QSSRTVMVAFPPFFEIGTIEIPVDSWAHVAVTFDASDNTMKTYVNGVVDLSFSFP-TINTGSGPFALGRSALNGNLPVYEGYLTDFRAYDDALDAVAV 606
D+SG+G T + +AT G+FG SF+G+SS +T+A D S L N T W+Y + + +T ++ Q + T+ V G +P++SW+H+A T+D + TM+ YVNG +F+ +I T +G ++G + + G + G + + R Y+ AL A +
Sbjct: 135 DASGSGNTGTLSGATWNAT---GKFGKALSFNGSSSLVTVA--DAASLDLTNG-MTLEAWLYPTALSGWRTAILKRTTSGLAYSLYAHNNVPQPATTINVGGSDVSATGPSALPLNSWSHLAATYDGT--TMRIYVNGAQVGTFAVSGSITTSTGQLSIGGNNVWGEY--FSGLIDEVRVYNRALSAAEI 314 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig108.704.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig108.704.1 >prot_Ecto-sp9_F_contig108.704.1 ID=prot_Ecto-sp9_F_contig108.704.1|Name=mRNA_Ecto-sp9_F_contig108.704.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=327bp MSLLLNYKFQSNTNIGEDSSGNGVDITNNAGVVSATDPLGQFGDVASFDGback to top mRNA from alignment at Ecto-sp9_F_contig108:45230..46213- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig108.704.1 ID=mRNA_Ecto-sp9_F_contig108.704.1|Name=mRNA_Ecto-sp9_F_contig108.704.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=984bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:45230..46213- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig108:45230..46213- >mRNA_Ecto-sp9_F_contig108.704.1 ID=mRNA_Ecto-sp9_F_contig108.704.1|Name=mRNA_Ecto-sp9_F_contig108.704.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1962bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:45230..46213- (Ectocarpus species9 EcSCA_722f female)back to top |