mRNA_Ecto-sp9_F_contig108.702.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig108.702.1
Unique NamemRNA_Ecto-sp9_F_contig108.702.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig108.702.1 vs.
Match: Uncharacterized (protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH5_9PHYC)

HSP 1 Score: 84.3 bits (207), Expect = 1.050e-17
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:    1 VACGTIVHNNKTQVASENTQSNSRFVYDQQSQETTEVSRNAAVLGASGQGAHVELSTLVTVDGERSMQPVIKSSPTSTTV-SSLRGGLVANLTIDGSISWDRDESCLYLSANKAFRFKYMESNGVSPSMLVLEGLNPTTL--QYTPKFEISSD 450
            ++CG +VH     +      S   F YD++S E  EVSR+  ++ +S        S         +MQPV+ S+ + + V SS    L   LT+DG ISWD   +CLYLSA+K FRF++ ES+GV+PS L+LE L        Y PK E +S+
Sbjct:   20 MSCGDVVHGEVVNIGDLVCSS---FSYDEESGEAREVSRDDVIVDSSSGSVSFRSSVR---SKNSTMQPVLISASSQSCVKSSTDNELFTTLTLDGGISWDSSTACLYLSADKLFRFRFAESDGVNPSRLILEALGSENGGGTYLPKAEFTSE 166
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig108.702.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.050e-1737.91protein n=1 Tax=Feldmannia species virus TaxID=394... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig108contigEcto-sp9_F_contig108:36347..36799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928300.6993117-CDS-Ecto-sp9_F_contig108:36346..367991622928300.6993117-CDS-Ecto-sp9_F_contig108:36346..36799Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 36347..36799 -
1692277827.0211172-CDS-Ecto-sp9_F_contig108:36346..367991692277827.0211172-CDS-Ecto-sp9_F_contig108:36346..36799Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 36347..36799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig108.702.1prot_Ecto-sp9_F_contig108.702.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig108 36347..36799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig108.702.1

>prot_Ecto-sp9_F_contig108.702.1 ID=prot_Ecto-sp9_F_contig108.702.1|Name=mRNA_Ecto-sp9_F_contig108.702.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=151bp
VACGTIVHNNKTQVASENTQSNSRFVYDQQSQETTEVSRNAAVLGASGQG
AHVELSTLVTVDGERSMQPVIKSSPTSTTVSSLRGGLVANLTIDGSISWD
RDESCLYLSANKAFRFKYMESNGVSPSMLVLEGLNPTTLQYTPKFEISSD
*
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mRNA from alignment at Ecto-sp9_F_contig108:36347..36799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig108.702.1 ID=mRNA_Ecto-sp9_F_contig108.702.1|Name=mRNA_Ecto-sp9_F_contig108.702.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:36347..36799- (Ectocarpus species9 EcSCA_722f female)
GTGGCTTGTGGTACGATAGTGCACAATAACAAGACCCAAGTGGCTTCTGA
GAACACTCAAAGCAATTCTCGCTTTGTGTATGACCAGCAGAGTCAAGAAA
CGACGGAAGTGAGTAGGAATGCAGCTGTGTTGGGTGCATCTGGTCAGGGC
GCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAGTAT
GCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGGTTTCCTCTCTGC
GAGGAGGGTTGGTCGCGAACCTGACAATCGATGGGTCCATCTCGTGGGAT
CGAGACGAGTCTTGTCTGTACTTATCTGCCAACAAGGCATTTCGATTCAA
GTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAGGGT
TGAATCCAACCACTCTTCAATACACACCCAAATTTGAGATATCGTCAGAT
TGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig108:36347..36799-

>mRNA_Ecto-sp9_F_contig108.702.1 ID=mRNA_Ecto-sp9_F_contig108.702.1|Name=mRNA_Ecto-sp9_F_contig108.702.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:36347..36799- (Ectocarpus species9 EcSCA_722f female)
GTGGCTTGTGGTACGATAGTGCACAATAACAAGACCCAAGTGGCTTCTGA
GAACACTCAAAGCAATTCTCGCTTTGTGTATGACCAGCAGAGTCAAGAAA
CGACGGAAGTGAGTAGGAATGCAGCTGTGTTGGGTGCATCTGGTCAGGGC
GCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAGTAT
GCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGGTTTCCTCTCTGC
GAGGAGGGTTGGTCGCGAACCTGACAATCGATGGGTCCATCTCGTGGGAT
CGAGACGAGTCTTGTCTGTACTTATCTGCCAACAAGGCATTTCGATTCAA
GTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAGGGT
TGAATCCAACCACTCTTCAATACACACCCAAATTTGAGATATCGTCAGAT
TGAGTGGCTTGTGGTACGATAGTGCACAATAACAAGACCCAAGTGGCTTC
TGAGAACACTCAAAGCAATTCTCGCTTTGTGTATGACCAGCAGAGTCAAG
AAACGACGGAAGTGAGTAGGAATGCAGCTGTGTTGGGTGCATCTGGTCAG
GGCGCTCACGTAGAGCTCAGTACCCTTGTGACGGTGGACGGGGAGAGGAG
TATGCAGCCGGTAATAAAGTCGAGTCCGACGAGCACCACGGTTTCCTCTC
TGCGAGGAGGGTTGGTCGCGAACCTGACAATCGATGGGTCCATCTCGTGG
GATCGAGACGAGTCTTGTCTGTACTTATCTGCCAACAAGGCATTTCGATT
CAAGTATATGGAGAGCAACGGAGTATCTCCTTCGATGCTTGTGCTGGAAG
GGTTGAATCCAACCACTCTTCAATACACACCCAAATTTGAGATATCGTCA
GATTGA
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