mRNA_Ecto-sp9_F_contig108.701.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: FirrV-1-A14 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM73_9PHYC) HSP 1 Score: 192 bits (489), Expect = 2.120e-58 Identity = 101/218 (46.33%), Postives = 132/218 (60.55%), Query Frame = 1
Query: 4 PRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTRKVNIVACRDMFVFFPLAEGKMTMVRGSTGHEATFVCTKQHWKTHKF-APTAVSEGASMIDGKFYNELDIRKVMICFSHGSNTYDKAKL-LQAPTVAIPDELRQKL 651
PRV I+TPT SRA+FAPL RN+ QTYP ++ +VVGD D R+++ + SP + +IG KRN+AC A KIL +DDDD YH Y+E AV +R RKVN+V CRDM V+F +GK+ VRGS HEAT VCTKQHW + T E ++ G FYNELDI + MIC +HG NT DK+ L L+ + + +R+ L
Sbjct: 4 PRVSILTPTMASRARFAPLALRNIVSQTYPASRIEWVVVGDADRTARKVFESLESPESPELRYFEYSGSDTSIGAKRNYACSVATSKILVNVDDDDLYHPRYVENAVRELRGRKVNLVGCRDMMVYF-FDDGKLIYVRGSHVHEATIVCTKQHWTQFPYRCETDRGEARPLLQGSFYNELDISQTMICLAHGHNTVDKSGLKLECTEIPVSPRVRRVL 220
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D2E9_9ZZZZ) HSP 1 Score: 115 bits (288), Expect = 2.640e-28 Identity = 70/211 (33.18%), Postives = 104/211 (49.29%), Query Frame = 1
Query: 13 CIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTRKVNIVACRDMFVFFPLAEGKMTMVRG---STGHEATFVCTKQHWKTHKFAPTAVSEGASMIDGKFYN--ELDIRKVMICFSHGSNTYDKAKLLQAPTVAIP 630
C + T++R KF L+ N+ CQTYP +L++++ D D QL P + Y +CD IG+KRN + G +A MD DD Y +Y+E+++ + +K + V DM +P +GK +R S +EAT V K W FA + SE + G+ + DI+KVMIC H +NT DK P V +P
Sbjct: 7 CSIIIPTYNRKKFEKLIEYNILCQTYP-HILEIVIADDGDDEMLQLNV-------PYSINYIKCDRM-TIGQKRNLLASRCKGVYIAHMDTDDVYLPTYIEHSISILENQKKDAVGTSDMVFIYP--DGKTGSMRNPLLSMANEATLVYKKSFWDEKPFAESQSSEAIYFLKGRHWQTGHSDIKKVMICICHSTNTVDKNVWKTCPEVELP 206
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E3J992_9BACT) HSP 1 Score: 96.3 bits (238), Expect = 1.090e-20 Identity = 66/215 (30.70%), Postives = 102/215 (47.44%), Query Frame = 1
Query: 4 PRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTRKVNIVACRD-MFVFFPLAEGKMTMVRGSTGHEA--TFVCTKQHWKTHKFAPTAVSEGASMIDGKFYN--------ELDIRKVMICFSHGSNTYDKAKLLQAP 615
P V + TPT ++R F P L +N QTYPK+L++ I++ D + L+ DV Y + +G+KRN K+ G+IL MDDDD+Y + ++V +R+R + A M+++F + H TF +Q K K+ + A M + K + +LD K ++CFSH NT+DK KLL P
Sbjct: 17 PFVSVCTPT-YNRRHFIPFLIQNFQAQTYPKELMEWIIIDDGEDSVEDLFKDV------ECVKYFRYNEKMKLGKKRNLMHQKSKGEILVYMDDDDYYPPDRVNHSVNRLRSRPEALAAGSSCMYIYFKHIDKIYQFGPYGPRHATAGTFAFKRQLLKETKY-----DDDAEMAEEKLFLKNYTIPFVQLDPLKTILCFSHDKNTFDKKKLLVNP 219
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=A0A2E7GE80_9PROT) HSP 1 Score: 85.9 bits (211), Expect = 8.920e-17 Identity = 64/218 (29.36%), Postives = 102/218 (46.79%), Query Frame = 1
Query: 4 PRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTR-KVNIVACRDMFVFFPLAE-----GKMTMVRGSTGHEATFVCTKQHWKTHKFAPTAVSEGASMIDGKFYN--------ELDIRKVMICFSHGSNTYDKAKLLQAP 615
P V + TPT ++R F P L + QTYPK+L++ IVV D+D L+ V Y +G+KRNF KA G+I+ MDDDDFY + +AV +R+ K + ++++F + G + + G TF ++ T + A++ + K + +L+ K ++CF+H NT+DK KLL P
Sbjct: 17 PFVSVCTPT-YNRRVFLPQLIKCFQAQTYPKELMEWIVVDDSDESVEDLFKGV------ECVKYFRVKEKMRLGKKRNFMNSKATGEIIVYMDDDDFYPPERVNHAVNRLRSAPKAMVAGSSIVYIYFNDLDAIFQFGPYGPMHATAG---TFA-----FRRSLLDSTDYDDEANLAEEKRFLKNYTVPLIQLNPEKAILCFAHQYNTFDKRKLLLNP 219
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E0VAI5_9EURY) HSP 1 Score: 84.7 bits (208), Expect = 2.330e-16 Identity = 69/231 (29.87%), Postives = 106/231 (45.89%), Query Frame = 1
Query: 4 PRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTRKVNI-VACRDMFVFFPLAE-----GKMTMVRGSTGHEATFVCTKQHWKTHKFAPTAVSEGASMIDGKFYN--------ELDIRKVMICFSHGSNTYDKAKLLQA-PTVAIPDELRQKL 651
P V + TPT ++R KF P L + QTYPKQL++ IV+ D + L+ DV Y + +GRKRNF ++ G+I+ MDDDD+Y + +AV +R+R + V +F++F + G + G TF +K T + A + + K + +LD K ++ F+H NT+DK KLL P L+ KL
Sbjct: 16 PFVSVCTPT-YNRRKFIPQLIKCFKNQTYPKQLMEWIVIDDGEDSVEDLFKDV------ECVKYIRVNEKMKLGRKRNFMHEQSKGEIIVYMDDDDYYPPERVNHAVNRLRSRPEALAVGSSIVFIYFNDLDKIYQFGPYGPTHATAG---TFA-----FKRKLLDQTRYDDDAEIAEEKKFLKNYQIPLVQLDPMKAILVFAHQDNTFDKRKLLPGHPKFVRETRLKPKL 231
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BYG2_9ZZZZ) HSP 1 Score: 84.7 bits (208), Expect = 2.410e-16 Identity = 62/213 (29.11%), Postives = 98/213 (46.01%), Query Frame = 1
Query: 4 PRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTRKVNIVACRDMF-VFFPLAEGKMTMVRGSTGHEA--TFVCTKQHWKTHKFAPTAVSEGASMIDGKFYN--------ELDIRKVMICFSHGSNTYDKAKLLQ 609
P V I TPT ++R KF P L + QTYP++L++ +++ D + L+ V Y + +G KRN+ K G+I+ MDDDDFYH + +AV +R + A + +FF + H TF K+ K K+ + A M + K + +L+ RK M+ F+H +NT+DK LL+
Sbjct: 17 PFVSICTPT-YNRRKFIPFLIKCYQSQTYPRELMEWVIIDDGEDSVEDLFKGV------PTVKYTRLEEKMKLGAKRNYMHTKCKGEIIIYMDDDDFYHPERVNHAVNRLRGNPQALAAGSSVIHIFFKHIQTIYEFGPYGPRHATAGTFAFKKELLKQTKY-----DDDAEMAEEKQFLKNYTIPFVQLNPRKTMLVFAHDANTFDKKILLE 217
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0J8Y4_9ZZZZ) HSP 1 Score: 82.8 bits (203), Expect = 1.240e-15 Identity = 64/215 (29.77%), Postives = 104/215 (48.37%), Query Frame = 1
Query: 4 PRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMR-TRKVNIVACRDMFVFFPLAE-----GKMTMVRGSTGHEATFVCTKQHWKTHKFAPTA-VSEGASMIDGKFYN----ELDIRKVMICFSHGSNTYDKAKLLQAP 615
P V + TPT ++R KF P L + + QTYPKQL++ IV+ D + L+ DV Y +GRKRN+ K+ G+I+ MDDDD+Y + +AV +R T + ++++F + G + + G TF ++ ++ A ++E + + K Y +LD K ++ F+H NT+DK KLL P
Sbjct: 16 PFVSVCTPT-YNRRKFIPQLIKCFANQTYPKQLMEWIVIDDGEDSVEDLFKDV------ECVKYFRITEKMKLGRKRNYMHEKSKGEIIVYMDDDDYYPPERVNHAVNRLRSTPQALATGSSIVYIYFNDLDKIYQFGPYGPMHATAG---TFAFKRELLNQTRYDDNAEIAEEKAFL--KNYTIPLVQLDPLKAILVFAHQFNTFDKRKLLVNP 218
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: glycosyltransferase (n=1 Tax=Burkholderia ubonensis TaxID=101571 RepID=UPI0009B3E1DF) HSP 1 Score: 78.6 bits (192), Expect = 2.260e-13 Identity = 54/204 (26.47%), Postives = 90/204 (44.12%), Query Frame = 1
Query: 1 MPRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPI-ACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTRKVNIVACRDMFVFFPLAEGKMTMVRGSTGH--EATFVCTKQHWKTHKFAPTA-VSEGASMIDGKFYN--ELDIRKVMICFSHGSNTYDK 594
+P V +VTPT + R +F P L Q YP +L+++ D+ + L + S A Y IG+KRN A G+ + MDDDD+Y + + YAV + + C +++++ H TF ++ H+ A ++E ++G +LD R+ ++C SH +NTYDK
Sbjct: 5 LPFVSVVTPT-WCRREFLPYLVHIFYNQDYPVSRRELVILDDSPQNNQDLIDQLTSTFSNRDAIRYFHVSERMTIGQKRNRLNELARGEYIVCMDDDDYYPRDKISYAVGELMNHEATFSGCDQIYIWYSHINKIYKTAAWGRNHALNGTFAYHRRFLTNHRHDDAATLAEETQFLNGFTARVLQLDPRRSILCVSHSANTYDK 207
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KEC9_9ZZZZ) HSP 1 Score: 75.9 bits (185), Expect = 4.490e-13 Identity = 60/209 (28.71%), Postives = 91/209 (43.54%), Query Frame = 1
Query: 4 PRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTRKVNIVACRDMFVFFPLAEGKMTMVRGSTGHEATFVCTKQHWKTHKFAPTAVSEGASMIDGKFYN--------ELDIRKVMICFSHGSNTYDKAKLL 606
P V + TPT ++R F P L + QTYPKQL++ I++ D L+ DV Y + +G+KRN K G+I+ MDDDD+Y + AV +R+ ++A + + K G G T +K T + A + + K + +LD K ++ FSH NT+DK KLL
Sbjct: 15 PFVSVCTPT-YNRRYFIPSLIKAFKQQTYPKQLMEWIIIDDGKDSVEDLFKDV------ECVKYFRYEEKMKLGKKRNVMHEKCKGEIIVYMDDDDYYPPDRVNEAVNKLRS-SFEVLAAGSSRLHIYFKDLKKIYAFGPYGPRHATAGTFA-FKKKLLLQTCYDDEAEVAEEKKFLKDYTIPFIQLDSYKSILVFSHDYNTFDKKKLL 214
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Match: Glyco_trans_2-like (domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9LZ01_9BACT) HSP 1 Score: 62.0 bits (149), Expect = 1.160e-7 Identity = 53/218 (24.31%), Postives = 83/218 (38.07%), Query Frame = 1
Query: 4 PRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGD---------TDPRTRQLYSDVFRQLSPIACTYHECDITGNIGRKRNFACGKANGKILAAMDDDDFYHKSYLEYAVLTMRTRKVN-----IVACRDMFVFFPLAEGKMTMVRGSTGHE----ATFVCTKQHWKTHKFAPTAVSEGASMIDGKFYNELDIR----KVMICFSHGSNTYD 591
P V + PTT R F P + QTY L ++ G+ D R R Y RQ IG KRN AC +A G+++A DDDD++H L + V + + ++ C + L ++ S HE A+F+ + W FA ++ E I + + + ++ + HG NT D
Sbjct: 329 PPVSCIMPTTGDRRHFIPQAIKCFQRQTYSNSELVILCDGEDDLSDLIPCADQRVRYFYLGRERQ---------------TIGTKRNLACERARGELIAHFDDDDWFHPDRLSFQVGALLAEGADFCGLPLILCYVVCSGEVLVSQMPALLHPSLWHELPAGASFLYRRDFWSRSPFADVSLDEDGIFIRAEGRQDQAVMVSDYRLYVAIIHGVNTSD 531 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig108.701.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig108.701.1 >prot_Ecto-sp9_F_contig108.701.1 ID=prot_Ecto-sp9_F_contig108.701.1|Name=mRNA_Ecto-sp9_F_contig108.701.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=217bp MPRVCIVTPTTFSRAKFAPLLARNVSCQTYPKQLLQLIVVGDTDPRTRQLback to top mRNA from alignment at Ecto-sp9_F_contig108:24959..25609+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig108.701.1 ID=mRNA_Ecto-sp9_F_contig108.701.1|Name=mRNA_Ecto-sp9_F_contig108.701.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=651bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:24959..25609+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig108:24959..25609+ >mRNA_Ecto-sp9_F_contig108.701.1 ID=mRNA_Ecto-sp9_F_contig108.701.1|Name=mRNA_Ecto-sp9_F_contig108.701.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1302bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:24959..25609+ (Ectocarpus species9 EcSCA_722f female)back to top |