mRNA_Ecto-sp9_F_contig108.697.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig108.697.1
Unique NamemRNA_Ecto-sp9_F_contig108.697.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig108.697.1 vs.
Match: Uncharacterized (protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC8_9PHYC)

HSP 1 Score: 109 bits (273), Expect = 1.340e-28
Identity = 51/111 (45.95%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:   28 LSYWKLAATIVIFVAATSSLSSKCYENQTMPRKHVLKLVDMLRSAGEYSIRASQSANAVTIYADTCSARNAVNTVADLLTPQQVKALTGVNLCEIKEFISQQHQNATEVLL 360
            ++YWK + T+++ +AA S+LS KCYE   +PR+HVLK+ ++LR+A E+S+RASQ +    ++ DTC A+  ++ VA LLT +QV+ +  +++ EIKEFI+ QH  AT  LL
Sbjct:    1 MTYWKASCTLLLTLAAVSALSRKCYETSRLPRRHVLKITELLRTAAEHSLRASQDSRPENVFHDTCQAKVNIDLVAQLLTREQVRHIANIDIDEIKEFIATQHLKATATLL 111
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BLAST of mRNA_Ecto-sp9_F_contig108.697.1 vs.
Match: EsV-1-67 (n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K)

HSP 1 Score: 108 bits (270), Expect = 4.160e-28
Identity = 53/122 (43.44%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:    1 MERLNPHLSLSYWKLAATIVIFVAATSSLSSKCYENQTMPRKHVLKLVDMLRSAGEYSIRASQSANAVTIYADTCSARNAVNTVADLLTPQQVKALTGVNLCEIKEFISQQHQNATEVLLQA 366
            M+R+N   +++YWKL+  +V+FV  TS LS + +E+  +PR+H+LK  ++LR A   SI+++Q  + V  + D+  A  AVN V++ LTP QVK +  V++ E+KEFIS+QH +AT  L+QA
Sbjct:    1 MDRMNQRSAMAYWKLSTIVVVFVGVTSYLSVRAHESSKLPREHILKYSELLREAARASIQSTQDQHPVQSFIDSSKAMCAVNIVSEFLTPHQVKHIMNVDIGEMKEFISKQHDDATSALVQA 122
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BLAST of mRNA_Ecto-sp9_F_contig108.697.1 vs.
Match: FirrV-1-B32 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM04_9PHYC)

HSP 1 Score: 97.4 bits (241), Expect = 7.780e-24
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:    1 MERLNPHLSLSYWKLAATIVIFVAATSSLSSKCYENQTMPRKHVLKLVDMLRSAGEYSIRASQSANAVTIYADTCSARNAVNTVADLLTPQQVKALTGVNLCEIKEFIS 327
            MERLNP  S++YWK +  ++  V  TS +S KC++   +PR H+LK+ ++LR   E+SI ASQS    T Y DTC A+  +N V++LLTP+Q+  L+G+++ E+K  I+
Sbjct:    1 MERLNPQASMTYWKASILLLTSVVLTSWISKKCFQQSKLPRHHLLKISELLRRGIEHSIAASQSPT--TRYRDTCKAKIYINLVSELLTPEQILDLSGIDIHELKHLIT 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig108.697.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.340e-2845.95protein n=1 Tax=Feldmannia species virus TaxID=394... [more]
EsV-1-674.160e-2843.44n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K[more]
FirrV-1-B327.780e-2444.04n=1 Tax=Feldmannia irregularis virus a TaxID=23199... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig108contigEcto-sp9_F_contig108:17705..18070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928300.4314399-CDS-Ecto-sp9_F_contig108:17704..180701622928300.4314399-CDS-Ecto-sp9_F_contig108:17704..18070Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 17705..18070 +
1692277826.9672625-CDS-Ecto-sp9_F_contig108:17704..180701692277826.9672625-CDS-Ecto-sp9_F_contig108:17704..18070Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 17705..18070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig108.697.1prot_Ecto-sp9_F_contig108.697.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig108 17705..18070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig108.697.1

>prot_Ecto-sp9_F_contig108.697.1 ID=prot_Ecto-sp9_F_contig108.697.1|Name=mRNA_Ecto-sp9_F_contig108.697.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=122bp
MERLNPHLSLSYWKLAATIVIFVAATSSLSSKCYENQTMPRKHVLKLVDM
LRSAGEYSIRASQSANAVTIYADTCSARNAVNTVADLLTPQQVKALTGVN
LCEIKEFISQQHQNATEVLLQA
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mRNA from alignment at Ecto-sp9_F_contig108:17705..18070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig108.697.1 ID=mRNA_Ecto-sp9_F_contig108.697.1|Name=mRNA_Ecto-sp9_F_contig108.697.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:17705..18070+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGAGGCTGAATCCCCACCTTTCGCTCTCTTACTGGAAGCTTGCTGC
AACGATCGTGATTTTTGTAGCTGCCACGAGCTCGCTGTCATCAAAATGCT
ATGAGAATCAAACTATGCCGAGAAAACACGTCTTGAAGCTGGTCGACATG
CTACGGTCGGCCGGGGAGTACAGCATCAGAGCGTCGCAGAGCGCGAACGC
AGTCACAATATATGCTGACACTTGCAGCGCCAGAAACGCCGTGAACACCG
TCGCGGATTTGCTCACGCCGCAGCAAGTGAAAGCACTCACGGGCGTCAAC
CTGTGCGAGATAAAGGAATTCATATCACAACAACACCAAAACGCCACCGA
AGTGCTGCTGCAAGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig108:17705..18070+

>mRNA_Ecto-sp9_F_contig108.697.1 ID=mRNA_Ecto-sp9_F_contig108.697.1|Name=mRNA_Ecto-sp9_F_contig108.697.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:17705..18070+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGAGGCTGAATCCCCACCTTTCGCTCTCTTACTGGAAGCTTGCTGC
AACGATCGTGATTTTTGTAGCTGCCACGAGCTCGCTGTCATCAAAATGCT
ATGAGAATCAAACTATGCCGAGAAAACACGTCTTGAAGCTGGTCGACATG
CTACGGTCGGCCGGGGAGTACAGCATCAGAGCGTCGCAGAGCGCGAACGC
AGTCACAATATATGCTGACACTTGCAGCGCCAGAAACGCCGTGAACACCG
TCGCGGATTTGCTCACGCCGCAGCAAGTGAAAGCACTCACGGGCGTCAAC
CTGTGCGAGATAAAGGAATTCATATCACAACAACACCAAAACGCCACCGA
AGTGCTGCTGCAAGCCATGGAGAGGCTGAATCCCCACCTTTCGCTCTCTT
ACTGGAAGCTTGCTGCAACGATCGTGATTTTTGTAGCTGCCACGAGCTCG
CTGTCATCAAAATGCTATGAGAATCAAACTATGCCGAGAAAACACGTCTT
GAAGCTGGTCGACATGCTACGGTCGGCCGGGGAGTACAGCATCAGAGCGT
CGCAGAGCGCGAACGCAGTCACAATATATGCTGACACTTGCAGCGCCAGA
AACGCCGTGAACACCGTCGCGGATTTGCTCACGCCGCAGCAAGTGAAAGC
ACTCACGGGCGTCAACCTGTGCGAGATAAAGGAATTCATATCACAACAAC
ACCAAAACGCCACCGAAGTGCTGCTGCAAGCC
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