mRNA_Ecto-sp9_F_contig108.696.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig108.696.1
Unique NamemRNA_Ecto-sp9_F_contig108.696.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig108.696.1 vs.
Match: Uncharacterized (protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK7_9PHYC)

HSP 1 Score: 132 bits (332), Expect = 3.340e-36
Identity = 73/160 (45.62%), Postives = 103/160 (64.38%), Query Frame = 1 
Query:   19 GAVKGGLHGLLIGIALGVAGNIMAPPVDYTQVLVWENRYGKKTKFTNLETASILIDDLVKIHEVRAHNLGAYNEAFRNLQSVITLYHGVKSGEIEVDMMLPKRMTNYTIRASKAMQAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHALP 498
            G V+GGL G + G+ LG AG++ +        LVW NR G+  +FT+L +   L DDL  +   R     A+NEAFRN+Q+VI++YH VK   +  +MM   +MTN+ +RASKA+ A++   LA D +KAA  E AMM+IQLS+EE I+F R +SK +LP
Sbjct:    6 GVVRGGLFGFVGGLILGAAGSLSSNSESAEVELVWTNREGRTVRFTHLGSIPSLRDDLYTVFHHREFKRDAFNEAFRNIQNVISVYHPVKEAAV-ANMMSATKMTNFGVRASKALGAMHDEILAKDPMKAAAFEKAMMSIQLSLEESIDFVRLKSKKSLP 164
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BLAST of mRNA_Ecto-sp9_F_contig108.696.1 vs.
Match: FirrV-1-A44 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC)

HSP 1 Score: 127 bits (319), Expect = 4.320e-34
Identity = 77/171 (45.03%), Postives = 99/171 (57.89%), Query Frame = 1 
Query:    4 DRIFAGAVKGGLHGLLIGIALGVAGNIMAPPVDYTQVLVWENRYGKKTKFTNLETASILIDDLVKIHEVRAHNLGAYNEAFRNLQSVITLYHGVKSGEIE----VDMMLPKRMTNYTIRASKAMQAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHALPKI 504
              +  G  KGGL+GL  GI LG AG +   P    + LVW    GKK +   L     L D L  I + R  N  A+NEAFRN+Q+V+++YH   S         D+M   +MTNYT+RASKAM+AV++S L  D  KAA  E AMM IQL++EE IN  R +SK +LP I
Sbjct:    3 SALMKGCFKGGLYGLCGGIFLGAAGALT--PSQTPEQLVWTTHQGKKVRLVYLHHVPGLKDHLTVIFQHRTRNERAFNEAFRNIQNVLSVYHLSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLPTI 171
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BLAST of mRNA_Ecto-sp9_F_contig108.696.1 vs.
Match: EsV-1-43 (n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K)

HSP 1 Score: 108 bits (269), Expect = 1.320e-26
Identity = 61/170 (35.88%), Postives = 98/170 (57.65%), Query Frame = 1 
Query:    4 DRIFAGAVKGGLHGLLIGIALGVAGNIMAPPVDYTQVLVWENRYGKKTKFTNLETASI--LIDDLVKIHEVRAHNLGAYNEAFRNLQSVITLYHG-VKSGEIEVDMMLPKRMTNYTIRASKAMQAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFINFTREESKHALPKI 504
             + F G  +G + G+L G  LG  GN+ A  +    V+ W++R G   KF +LE      +  DL+ IH  R  ++ A+N+A R++QSV  LY   +  GE +  +M  +++TNY+I A+K+M A+ +S  A +  +++ VE +MM + L+ EE IN  R  SK  LP+I
Sbjct:    7 SKAFGGGARGAMFGILGGFVLGAVGNVFADGLSTVDVVYWKDRRGTTKKFADLEVLESFDIYKDLLVIHSARECDMEAFNDACRHIQSVAYLYKRFLDKGEDKASIMDCRKITNYSIMATKSMNALLISCRAKNYPESSDVEKSMMQLHLTFEEIINGVRHVSKDILPEI 176
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BLAST of mRNA_Ecto-sp9_F_contig108.696.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.640e-8
Identity = 39/113 (34.51%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:  136 GKKTKFTNLETASI--LIDDLVKIHEVRAHNLGAYNEAFRNLQSVITLYHGVKSGEIE-VDMMLPKRMTNYTIRASKAMQAVYLSTLAGDKIKAAGVESAMMNIQLSVEEFIN 465
            G+  KF +LE      +  DL+++H  R  +  A+ +A R++QSVI LY+     +   V +M   ++TNY+I A+K+M A+ +S  A +  +++ VE +MM+I L+ E+ IN
Sbjct:  155 GQNQKFADLEVLESFDIYKDLLELHSARECDEEAFCDACRHIQSVIYLYNRFLVDKTRTVSIMKSHKITNYSIMATKSMNALLISCRAKNYPQSSDVEKSMMHIHLTFEDIIN 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig108.696.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized3.340e-3645.63protein n=1 Tax=Feldmannia species virus TaxID=394... [more]
FirrV-1-A444.320e-3445.03n=1 Tax=Feldmannia irregularis virus a TaxID=23199... [more]
EsV-1-431.320e-2635.88n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K[more]
Uncharacterized1.640e-834.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig108contigEcto-sp9_F_contig108:12809..13318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size510
Cds size510
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928300.0485058-CDS-Ecto-sp9_F_contig108:12808..133181622928300.0485058-CDS-Ecto-sp9_F_contig108:12808..13318Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 12809..13318 +
1692277826.9571264-CDS-Ecto-sp9_F_contig108:12808..133181692277826.9571264-CDS-Ecto-sp9_F_contig108:12808..13318Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig108 12809..13318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig108.696.1prot_Ecto-sp9_F_contig108.696.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig108 12809..13318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig108.696.1

>prot_Ecto-sp9_F_contig108.696.1 ID=prot_Ecto-sp9_F_contig108.696.1|Name=mRNA_Ecto-sp9_F_contig108.696.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=170bp
MDRIFAGAVKGGLHGLLIGIALGVAGNIMAPPVDYTQVLVWENRYGKKTK
FTNLETASILIDDLVKIHEVRAHNLGAYNEAFRNLQSVITLYHGVKSGEI
EVDMMLPKRMTNYTIRASKAMQAVYLSTLAGDKIKAAGVESAMMNIQLSV
EEFINFTREESKHALPKIK*
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mRNA from alignment at Ecto-sp9_F_contig108:12809..13318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig108.696.1 ID=mRNA_Ecto-sp9_F_contig108.696.1|Name=mRNA_Ecto-sp9_F_contig108.696.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:12809..13318+ (Ectocarpus species9 EcSCA_722f female)
ATGGACAGAATTTTCGCTGGTGCAGTTAAAGGCGGCCTTCACGGTCTGCT
AATAGGCATTGCCTTGGGAGTGGCCGGTAACATTATGGCACCCCCCGTGG
ACTACACGCAGGTACTGGTGTGGGAAAACAGATACGGCAAGAAAACAAAA
TTCACAAATCTCGAGACAGCGAGCATTCTCATCGACGACCTAGTCAAGAT
TCACGAGGTCAGAGCGCACAACTTAGGTGCATACAACGAAGCATTCCGGA
ACCTGCAGAGCGTAATTACTCTGTACCACGGGGTCAAGTCTGGCGAGATA
GAAGTAGACATGATGCTACCAAAACGCATGACGAACTACACCATACGCGC
ATCGAAGGCCATGCAAGCGGTGTATTTGTCTACACTAGCCGGCGACAAGA
TCAAGGCTGCTGGCGTGGAGAGTGCTATGATGAACATACAGCTGTCAGTG
GAAGAGTTCATCAACTTCACTAGAGAGGAGTCGAAGCACGCGTTACCAAA
AATAAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig108:12809..13318+

>mRNA_Ecto-sp9_F_contig108.696.1 ID=mRNA_Ecto-sp9_F_contig108.696.1|Name=mRNA_Ecto-sp9_F_contig108.696.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:12809..13318+ (Ectocarpus species9 EcSCA_722f female)
ATGGACAGAATTTTCGCTGGTGCAGTTAAAGGCGGCCTTCACGGTCTGCT
AATAGGCATTGCCTTGGGAGTGGCCGGTAACATTATGGCACCCCCCGTGG
ACTACACGCAGGTACTGGTGTGGGAAAACAGATACGGCAAGAAAACAAAA
TTCACAAATCTCGAGACAGCGAGCATTCTCATCGACGACCTAGTCAAGAT
TCACGAGGTCAGAGCGCACAACTTAGGTGCATACAACGAAGCATTCCGGA
ACCTGCAGAGCGTAATTACTCTGTACCACGGGGTCAAGTCTGGCGAGATA
GAAGTAGACATGATGCTACCAAAACGCATGACGAACTACACCATACGCGC
ATCGAAGGCCATGCAAGCGGTGTATTTGTCTACACTAGCCGGCGACAAGA
TCAAGGCTGCTGGCGTGGAGAGTGCTATGATGAACATACAGCTGTCAGTG
GAAGAGTTCATCAACTTCACTAGAGAGGAGTCGAAGCACGCGTTACCAAA
AATAAAGTAAATGGACAGAATTTTCGCTGGTGCAGTTAAAGGCGGCCTTC
ACGGTCTGCTAATAGGCATTGCCTTGGGAGTGGCCGGTAACATTATGGCA
CCCCCCGTGGACTACACGCAGGTACTGGTGTGGGAAAACAGATACGGCAA
GAAAACAAAATTCACAAATCTCGAGACAGCGAGCATTCTCATCGACGACC
TAGTCAAGATTCACGAGGTCAGAGCGCACAACTTAGGTGCATACAACGAA
GCATTCCGGAACCTGCAGAGCGTAATTACTCTGTACCACGGGGTCAAGTC
TGGCGAGATAGAAGTAGACATGATGCTACCAAAACGCATGACGAACTACA
CCATACGCGCATCGAAGGCCATGCAAGCGGTGTATTTGTCTACACTAGCC
GGCGACAAGATCAAGGCTGCTGGCGTGGAGAGTGCTATGATGAACATACA
GCTGTCAGTGGAAGAGTTCATCAACTTCACTAGAGAGGAGTCGAAGCACG
CGTTACCAAAAATAAAGTAA
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