mRNA_Ecto-sp9_F_contig108.695.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig108.695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL0_9PHYC) HSP 1 Score: 380 bits (976), Expect = 6.180e-123 Identity = 211/490 (43.06%), Postives = 291/490 (59.39%), Query Frame = 1
Query: 1 THTIMSGGALYVPEDLYDEFLGVYAREIERGNRTLAYSEKRSPDVFRMYFDLDLLDKHEMDDSSMLAIVREVQQTTALFFVGAEDEAMKCVVSRTQTKKLEASTPATDSPRCETFIKNGVHLNFPKLLVNLDMALQIRFSVVNPLEREFGQRAASHNPWSDVIDKAPYFNGLKMTGSVRRVRCNKCDSSKKKRQTRGEKDEERLKIMREIGNIRKKLYKRHDD-SFDYTNVMTFEGDEYKNVDLSNLHTKYYALSS--ICFRCNNKGWFLEQRYYSPSHILGAGGVLCCDDLQYLQSNYHEQMRWTSIRARTHDQAMPSYSVPAGHIRPPQDTASTCLRAFGSSGLQWVSPGLYREMINSDVHAEDAKGLSRWKGVTVTDKAAMDAITRCIRGMHDKYKNIIIKQAMEIKTGKKTPDN----------------KRTSNKQTAATTSNNDNVNMRLYTTVVVRVSGEGSKYCQNKGDEHTSNSVYFCISK 1413
THTIMSGG LYV E+ YDEFLGVYAREI+ GNRTL +SE +S VFRMYFD+D++D E+ +++ + V +T F++ + + KCVV T+ K P +D +TF KNG HL FP L V L+MALQ+RF+ V LE FG+R+ NPW DVIDKAPYFNGLKM GSV+ + C++C KK + K E I+R+I NIR+K Y R DD FDY+NVM+ E DE+KN DL+ L + Y + IC C +KGW LE R+Y P+ +L G L D++YL N HE MRWTSIR+R D+ Y+VP G+ P + + L+ G+ L+ SPG+YRE +N+++ DA G+ WKG +T ++ I IR Y++++++QA E++ K + K N A + + + + VRV+G GS YC NKG EHTSNS++F IS+
Sbjct: 25 THTIMSGGVLYVAEEYYDEFLGVYAREIDEGNRTLTFSELKSEGVFRMYFDIDMVDSRELSADDFVSLSQCVLETLRKFYIDIDQDLFKCVVCTTKPK------PLSDK---DTF-KNGCHLIFPFLNVTLEMALQLRFAAVRDLETRFGRRSRDANPWCDVIDKAPYFNGLKMCGSVKTLTCSECGGKKKNVR----KKPEVAAILRDIRNIRRKTYPRRDDPGFDYSNVMSIEKDEFKNEDLAELFSAYQDETGTLICPACGDKGWHLEDRFYMPAKVLHGDGSLAEADMEYLADNPHETMRWTSIRSRPSDRMTAGYTVPEGYTAPRTERPTNSLQILGAQ-LKSFSPGIYREAVNAEIFGSDAAGIKTWKGCEITAPKTLNLIAHEIRNYATVYQDLVVRQAFEMRVAKAVATSVVSSGSTRSKRGRAGSKALENMAVANKVPGRERRVLEVVARIFVRVAGTGSLYCMNKGAEHTSNSIFFWISQ 499
BLAST of mRNA_Ecto-sp9_F_contig108.695.1 vs.
Match: FirrV-1-A46 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM41_9PHYC) HSP 1 Score: 343 bits (879), Expect = 4.340e-108 Identity = 199/509 (39.10%), Postives = 284/509 (55.80%), Query Frame = 1
Query: 1 THTIMSGGALYVPEDLYDEFLGVYAREIERGNRTLAYSEKRSPDVFRMYFDLDLLDKHEMDDSSMLAIVREVQQTTALFFVGAEDEAMKCVVSRTQTKKLEASTPATDSPRCETFIKNGVHLNFPKLLVNLDMALQIRFSVVNPLEREFGQRAASHNPWSDVIDKAPYFNGLKMTGSVRRVRCNKCDSSKKKRQTRGEKDEERLKIMREIGNIRKKLYKRHDD-SFDYTNVMTFEGDEYKNVDLSNLHTKYYALSS--ICFRCNNKGWFLEQ-RYYSPSHILGAGGVLCCDDLQYLQSNYHEQMRWTSIRARTHDQAMPSYSVPAGHI-------------RPPQDTASTCLRAFGSSGLQWVSPGLYREMINSDVHAEDAKGLSRWKGVTVTDKAAMDAITRCIRGMHDKYKNIIIKQAMEIKTGKKTPDN--------KRTSNKQTAATTSNNDNVNM------RLYTTVVVRVSGEGSKYCQNKGDEHTSNSVYFCISKAAMW-KC 1431
THTIMSGG LYVPE+ YDEFLGVYAREI+ GNR L +SE +S DVFRMYFD+D+L+ E+D S + + R++ + ++ E++ KCVV T+ KK + +IKNG H+ FP L VNL+ ALQ+RF +V LE G R NPW D+IDKAPY+NGLKM GSV+ + C +C + + R E ++I+R+I N+R+K Y R+D+ +FDY+NV E DE+K+ L+ L +Y + +C C N+GW+LE R+Y P+ +L G +L+YL N HE MRWTSIR R D+ Y++ ++ ++ TCL G L +SPG+YRE +N + DA + WKG +TD ++AI +R +H YK + ++Q + GK N KR A + + V+M + +V RVSG G+ YC NK EH SN +YF I+ ++ KC
Sbjct: 25 THTIMSGGVLYVPEENYDEFLGVYAREIDSGNRGLTFSELKSGDVFRMYFDIDMLETRELDLSYFVHLCRDMVRAMRQYYTDVEEDTFKCVVCTTKPKKRTQ----------DEYIKNGCHVIFPSLRVNLETALQLRFFIVQALENTRGVRKIGINPWCDIIDKAPYYNGLKMCGSVKTIPCLECKGANRNITHRPEV----VEIVRQIRNVRRKYYPRNDNLAFDYSNVFNIEKDEFKHETLAELFARYQEETGYLMCVACGNRGWYLEHDRFYMPAMVLNGDGSSSEGELEYLHDNPHEAMRWTSIRCRPSDEVTGGYTMSPDNVGQYLRYARYEHRGESVRNNTVTCLNKLGPE-LADMSPGMYREAVNGAIAGNDADVIRTWKGEEITDTDVIEAIQNDVRVIHSNYKQLQVRQVFHLGVGKTVKVNAFGEIARGKRKKVLLMMAGIAEKNKVDMADKQVEQDTMVIVARVSGPGASYCMNKNREHGSNHIYFWITPEGIYQKC 518
BLAST of mRNA_Ecto-sp9_F_contig108.695.1 vs.
Match: EsV-1-45 (n=2 Tax=root TaxID=1 RepID=D8LP78_ECTSI) HSP 1 Score: 276 bits (706), Expect = 1.080e-82 Identity = 173/480 (36.04%), Postives = 258/480 (53.75%), Query Frame = 1
Query: 1 THTIMSGGALYVPEDLYDEFLGVYAREIERGNRTLAYSEKRSPDVFRMYFDLDLLDKHEMDDSSMLAIVREVQQTTALFFVGAE-DEAMKCVVSRTQTKKLEASTPATDSPRCETFIKNGVHLNFPKLLVNLDMALQIRFSVVNPLEREFGQRAASHNPWSDVIDKAPYFNGLKMTGSVRRVRCNKCDSSKKKRQTRGEKDEERLKIMREIGNIRKKLYKRHDDSFDYTNVMTFEGDEYKNVDLSNLHTKYYALSSI--CFRCNNKGWFLEQRYYSPSHILGAGGVLCCDDLQYLQSNYHEQMRWTSIRARTHDQAMPSYSVPAGHIRPPQDTASTCLRAFGSSGLQWVSPGLYREMINSDVHAEDAKGLSRWKGVTVTDKAAMDAITRCIRG-MHDKYKNIIIKQAMEI---KTGKKTPDNKRTSN---KQTAATTSNNDNVNMRLYTTVVVRVSGEGSKYCQNKGDEHTSNSVYFCIS 1410
T T+M+GG + VP++ YDEFL +YA E+ N+TL++SE RS VF MYFD+D+L + + I +Q ++ G + D+ +CVV T KK+ P+ D T KNG H FP L +NL ALQ+R+SVV LE+ G R S NPWSDVIDKAPY GLKM GS +RV+C C K+ KD+++ ++ E+ +RKK+Y R FDYT++ DE+K+ + + KY L+ C C N G +E+R Y P +L GG + L L+ +Y E M++TSIR + ++ +++P G R P + +R F S L + ++ +N+D++ DA+ + WKG V D + I +R + Y ++ I++ E K +K + N + A TT + +V L +V V+G GS +C NKG EH SNSVYF I+
Sbjct: 19 TQTVMTGGVVSVPDENYDEFLQLYAEEVRSKNKTLSFSELRSDPVFCMYFDVDMLGTGVLGAAESSRIFSVIQSVIRSYYTGDQNDDRFRCVVCDTSVKKV----PSADGETMLT--KNGYHAIFPNLRINLSQALQLRYSVVYELEKTLGPRTGSLNPWSDVIDKAPYTGGLKMCGSFKRVKCTDC-----KKTDPTFKDKKKA-LLSEMAKLRKKIYPRQ-PGFDYTDLSDIHSDEFKDAVFGDKYGKYLDLTGFNSCKMCLNTGKVMEKRTYMPCLVLDGGGDVDVSLLDVLREDYFEVMKYTSIRCQEGEKETSGFTIPKGVPRAPTEENGANMRTFSSKSLTHLGSDMHAFTVNNDIYLSDAQTMRLWKGPRVEDARRLSVIETFLRNNVCSAYSSVQIRKVSESTIKKVAQKPNGGSKMMNALIRAHAGTTPPSPDV--ALSNRYLVNVAGVGSTFCMNKGSEHASNSVYFIIT 483
BLAST of mRNA_Ecto-sp9_F_contig108.695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA7_9PHAE) HSP 1 Score: 244 bits (622), Expect = 2.010e-70 Identity = 156/475 (32.84%), Postives = 250/475 (52.63%), Query Frame = 1
Query: 1 THTIMSGGALYVPEDLYDEFLGVYAREIERGNRTLAYSEKRSPDVFRMYFDLDLLDKHEMDDSSMLAIVREVQQTTALFFVGAEDEA--MKCVVSRTQTKKLEASTPATDSPRCETFIKNGVHLNFPKLLVNLDMALQIRFSVVNPLEREFGQRAASHNPWSDVIDKAPYFNGLKMTGSVRRVRCNKCDSSKKKRQTRGEKDEERLKIMREIGNIRKKLYKRHDDSFDYTNVMTFEGDEYKNVDLSNLHTKYYALSSI--CFRCNNKGWFLEQRYYSPSHILGAGGVLCCDDLQYLQSNYHEQMRWTSIRARTHDQAMPSYSVPAGHIRPPQDTASTCLRAFGSSGLQWVSPGLYREMINSDVHAEDAKGLSRWKGVTVTDKAAMDAITRCIR-GMHDKYKNIIIKQAMEIKTGKK-----TPDNKRTSNKQTAATTSNNDNVNMRLYTTVVVRVSGEGSKYCQNKGDEHTSNSV 1395
THT+M+GG + VP + YDEFL +YA E+E N+T+++SE RS F MYFD+DLLD E+ L I +Q F+ G+ + +CVV T K+++ ++ K+G H+ P L V ++ ALQIR+ VV LE+ G R+ N WSDVIDKAPY NGLKM GS +RV KC KK T +K + ++ I +R+K+Y R D F+Y+++ + DE+K+ +++ +Y L+ C C N G +E+R Y P L G + L+ + + M++TSIR + + + +P G + P + +R F S L + + +N+D++ DA+ + WKG V D+ + I + IR + + Y ++ I++ E + +K + +K ++ A + S + + +V ++G GS YC NKG +HTSNSV
Sbjct: 20 THTLMTGGVVGVPHEQYDEFLRLYATEVESKNKTISFSELRSNPAFCMYFDIDLLDSKELSTEVGLRIYSLIQGVVRSFYPGSSGDTGRFQCVVCGTPPKRVDGEAGE------KSLTKSGYHITLPNLRVTVEQALQIRYCVVYELEKTLGPRSDGLNAWSDVIDKAPYTNGLKMCGSFKRV---KCTDYKKTDPTFKDK---KKALLSSIARLRRKIYPR-DRGFEYSDLADVQDDEFKDAMFGDMYGRYLELTGFNSCKTCLNTGKRIEERTYMPVLALDGSGDTDASLIDLLRDDLFKVMKYTSIRCKDGESETSGFVIPEGVPKAPTEENGANMRTFSSKKLTHLGSDVQAFTVNNDIYLSDAQTMHLWKGPRVEDERRLSVIEKFIRESVCEMYSSVQIRKVCESRLIQKVIPRASGGSKLINSLVGAHSGSIPPPPPVSVSNRYLVNIAGVGSTYCMNKGADHTSNSV 481
BLAST of mRNA_Ecto-sp9_F_contig108.695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Kaiserbacteria bacterium TaxID=2030810 RepID=A0A2A4T359_9BACT) HSP 1 Score: 86.7 bits (213), Expect = 2.320e-14 Identity = 47/187 (25.13%), Postives = 94/187 (50.27%), Query Frame = 1
Query: 1 THTIMSGGALYVPEDLYDEFLGVYAREIERGNRTLAYSEKRSPDVFRMYFDLDLLDKHEMDDSSMLAIVREVQQTTALFFVGAEDEAMKCVVSRTQTKKLEASTPATDSPRCETFIKNGVHLNFPKLLVNLDMALQIRFSVVNPLEREFGQRAASHNPWSDVIDKAPYFNG-LKMTGSVRRVRCNKC 558
TH ++SGG LY+P + D+F +Y + I+ N+ + + + +F+++ DLD + + + ++ + +Q FF + + + S P + + NG+H+N+P +LV++ AL +R +++ E +G+R +N W V+D++ Y +G L+M GS + C C
Sbjct: 45 THRLLSGGVLYIPSEKMDDFFEIYTQSIK--NKQPVFVTETTTPIFKLFIDLDFCNLEIIPNEKIIEHCKYIQGIIGEFFKNIYSVEERIAI-------ISISPPKEKNKNGAIYQANGIHMNWPNILVDIHDALLLRKAIIYAFESRYGRRPF-YNTWDQVVDESIYHHGGLRMIGSRKTKICKYC 221
BLAST of mRNA_Ecto-sp9_F_contig108.695.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acanthamoeba castellanii medusavirus TaxID=2080449 RepID=A0A3T1CXP8_9VIRU) HSP 1 Score: 86.7 bits (213), Expect = 3.470e-14 Identity = 109/487 (22.38%), Postives = 191/487 (39.22%), Query Frame = 1
Query: 1 THTIMSGGALYVPEDLYDEFLGVYAREIERGNRTLAYSEKRSPDVFRMYFDLDLLDKHEMDDSSMLAIVREVQQTTALFFVGAEDEAMKCVVSRTQTKKLEASTPATDSPRCETFIKNGVHLNFPKLLVNLDMALQIRFSVVNPLEREFGQRAASHNPWSDVIDKAPYF-NGLKMTGSVRRVRCNKCDSSKKKRQTRGEKDEERLKIMREIGNIRKKLYKRHDDSFDYTNVMTFEGDEYKNVDLSNLHTKYYALSSICFRCNNKGWFLEQRYYSPSHILGAGGVLCCDDLQYLQSNYHEQMRWTSIRARTHDQAMPSYSVPAGHIRPPQDTASTCLRAFGSSGLQWVSPGLYREMINSDVH------------AEDAKGLSRWKGVTVTDKAA-MDAITRCIRGMHDKYKNIIIKQAMEIKTGKKTPDNKRTSNKQTAATTSNNDNVNMRLYTTVVVRVSGE------GSKYCQNKGDEHTSNSVYF 1401
+H I +GG LYVP +EF + +++ +Y +R VF ++ DLD+ D + R +Q+ A F D + V+ + + + PR + K GVH+ +P +++ AL +R +++ L FG+R NPW V+D+A Y NGL+M GS + +C +C + K + + + + + ++ + L + FD T E ++ + C C G R Y P +L G D+LQ L+ D A Y A +R P DT + ++ P +++ SD++ +D G+ R KG +T + A + + +RG K + +++ A TT+N+ T + +G K+C NKGDEHTS++++F
Sbjct: 246 SHLIFTGGVLYVPASRQNEFRYHFLKDLRVAP---SYIGERRTAVFPLFGDLDMSDLEIPSQDRLDEYYRCMQEVVAELFPDLNDYERRMVICQAPI--------SFEKPRSRRY-KTGVHVYWPGVMLTATFALVVRKAIIKKLRERFGERPLPDNPWVKVLDEAVYTSNGLRMFGSFKADKCRECRGAGKVAIAQSQ-TQSTVLLRKQPNEVHPAL--KGQTKFD--TERTAESEQXXXXXXXXXQSDANVPKEPCGLCLETGKTHVGRLYEPVLVLDGSGEPDDDELQNLK-----------------DDAEALYD--ACTLRHPTDTPT----------VEPAMPEWLKDVKESDLYDGPSDEELRRLRRKDQTGIVR-KGARLTPRDADYRPVKQSLRGNEVKARAMLMD----------------------ALTTANDYMRGGPTITRIEYESTGNYYIAKTDCKWCPNKGDEHTSSTIWF 663 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig108.695.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig108.695.1 >prot_Ecto-sp9_F_contig108.695.1 ID=prot_Ecto-sp9_F_contig108.695.1|Name=mRNA_Ecto-sp9_F_contig108.695.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=481bp MSGGALYVPEDLYDEFLGVYAREIERGNRTLAYSEKRSPDVFRMYFDLDLback to top mRNA from alignment at Ecto-sp9_F_contig108:7204..8795+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig108.695.1 ID=mRNA_Ecto-sp9_F_contig108.695.1|Name=mRNA_Ecto-sp9_F_contig108.695.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1592bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:7204..8795+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig108:7204..8795+ >mRNA_Ecto-sp9_F_contig108.695.1 ID=mRNA_Ecto-sp9_F_contig108.695.1|Name=mRNA_Ecto-sp9_F_contig108.695.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2886bp|location=Sequence derived from alignment at Ecto-sp9_F_contig108:7204..8795+ (Ectocarpus species9 EcSCA_722f female)back to top |