mRNA_Ecto-sp9_F_contig10794.690.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10794.690.1
Unique NamemRNA_Ecto-sp9_F_contig10794.690.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW9_ECTSI)

HSP 1 Score: 477 bits (1228), Expect = 5.890e-167
Identity = 226/237 (95.36%), Postives = 231/237 (97.47%), Query Frame = 1
Query:    1 TQEGYYIFREGSA--AADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGEWLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDGNQPDSTTSCTS 705
            T+EGYYIFREGSA  AADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVF TCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRL+G+WLD+PPR+GAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDG QPDST S TS
Sbjct:   88 TKEGYYIFREGSAGAAADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFGTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLNGKWLDIPPRKGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDGYQPDSTASSTS 324          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9W6_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 2.350e-135
Identity = 186/235 (79.15%), Postives = 205/235 (87.23%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGEWLDVPPREGAFICNLGDMLQRW---TNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDGNQPDSTTS 696
            T+EGYYIFRE    +DGE DDARPL GPNQWPSE+LVPGW+ TMQ +F  MHAVG RL+GLLSVGLGLDP+ F++C SE AH LRLLHYSAEVSDP KGVMGAGAH+D+GL+TLLATDEVPGLQVRL+GEWLDVPPREGAFICNLGDMLQRW   TND+LRSTVHRVVNKLG ERYSIPFFFE NFDTEV C PQ CSEENPA+YPPV AG+Y++ KYSQTHQDFDGNQ +   S
Sbjct:   88 TKEGYYIFRELPTPSDGEEDDARPLKGPNQWPSEDLVPGWRATMQRYFTTMHAVGVRLSGLLSVGLGLDPSFFESCTSEMAHALRLLHYSAEVSDPAKGVMGAGAHSDYGLLTLLATDEVPGLQVRLNGEWLDVPPREGAFICNLGDMLQRWRVVTNDELRSTVHRVVNKLGRERYSIPFFFELNFDTEVVCLPQCCSEENPAKYPPVTAGSYILNKYSQTHQDFDGNQQNDEKS 322          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QM00_9CHLO)

HSP 1 Score: 257 bits (657), Expect = 2.080e-80
Identity = 126/226 (55.75%), Postives = 159/226 (70.35%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGEWLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDGNQ 678
            T+EG+Y  RE SA ++   +   PL GPNQWP E+LVPG++ T+  +F  + A+G RL  LL++ LGL P  F   F+     LR LHY+AEVS PG+GV GAGAH+D+G++TLLATDEVPGLQV L+G W +V P  GAFI NLGDML+RWTN   +ST+HRV+N  G ERYSIPFFFEPNF  +V C P   SE  PA YPP  AG +L+  Y+QTH  +D N+
Sbjct:   95 TKEGFYFGREVSADSE---EGKLPLHGPNQWPPEQLVPGFRLTVTAYFDALAALGMRLLRLLALSLGLPPDYFAPHFTHPMVALRPLHYTAEVSAPGQGVFGAGAHSDYGMLTLLATDEVPGLQVHLNGSWQEVAPLPGAFIVNLGDMLERWTNGLFKSTLHRVINTTGQERYSIPFFFEPNFTAKVECLPCCVSEARPAAYPPTTAGEHLLAMYAQTHAGYDVNK 317          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WWS1_9CHLO)

HSP 1 Score: 254 bits (650), Expect = 5.230e-79
Identity = 119/224 (53.12%), Postives = 153/224 (68.30%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGEWLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDG 672
            T+EG+Y  RE  A +    +  +PL GPNQWP E L+PG + T Q++F  + A+G RL  LL++ L L P  F   F      LR LHYS  +SDPG+G+ GAGAHTD+G++T+LATDEVPGLQ+R +G+W  V PR GAFI NLGDM++RWTN   +ST+HRV+N  G ERYSI +FFEP FD  V C PQ C  +NP RYPP  AG +L+ KY+ TH  + G
Sbjct:  122 TKEGFYFGREVPADSP---EALKPLHGPNQWPEESLMPGLRDTYQQYFEELRALGMRLLRLLALALDLPPLYFHPYFEPPMIMLRPLHYSGVISDPGEGIFGAGAHTDYGMLTILATDEVPGLQIRQNGKWTHVSPRNGAFIINLGDMVERWTNGSFKSTLHRVINTTGSERYSIAYFFEPCFDAVVECLPQCCGGDNPPRYPPTTAGQHLLDKYAATHAGYTG 342          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Hypothetical (protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YQ36_9CHLO)

HSP 1 Score: 244 bits (624), Expect = 1.450e-75
Identity = 119/224 (53.12%), Postives = 148/224 (66.07%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGEWLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDG 672
            T+EG+Y  RE   AAD   + ++PL GPNQWP E LVPG +     +F  + A+G +L  L+++ L L P  FD  F +   +LR LHYS   S PG GV GAGAHTD+G++T+L TDEVPGLQ+   G W DVPP  GAFI NLGDML+RWTN    ST+HRVVN  G ERYSI FFFEPNF+  V C PQ C  + P +YPP  AG +L+ KY+ TH  + G
Sbjct:   92 TKEGFYFGRE--IAADSP-EASKPLHGPNQWPDEALVPGLRDAYTRYFNALWALGTKLLRLVALALDLPPDHFDPHFQQPIVSLRPLHYSGTKSAPGDGVFGAGAHTDYGMLTILKTDEVPGLQIHTSGAWRDVPPMPGAFIINLGDMLERWTNGMFHSTLHRVVNTTGQERYSIAFFFEPNFEAIVECLPQCCGPDRPPKYPPTTAGQHLLDKYAATHAGYSG 312          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Hypothetical (protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QLD7_DUNTE)

HSP 1 Score: 243 bits (619), Expect = 2.130e-75
Identity = 118/224 (52.68%), Postives = 155/224 (69.20%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDAR-PLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGE-WLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDF 666
            T+EG+Y  RE S     E  +A+ PL GPNQWP+E LVPG++ +M+++   M+ +G RL  LL++GLGL P  FD  F      LR LHY+ +VS P +GV GAGAH+D+G++TLL TD+VPGLQ+  D   W+DVPP+   FI NLGDML+RWTN   +ST+HRVVN  G ERYS+  FFEPNFDT V C PQ CS E P ++PP  +G +L+ KY+ TH  +
Sbjct:   48 TKEGFYFGREISP----ESPEAKLPLHGPNQWPNEHLVPGYRASMEQYMRAMNELGHRLLRLLALGLGLPPDHFDRFFDRPMIFLRPLHYAPKVSAPSEGVFGAGAHSDYGMLTLLKTDDVPGLQIHTDATGWMDVPPKPECFIINLGDMLERWTNGMYKSTLHRVVNTTGKERYSLACFFEPNFDTIVECLPQCCSPERPPQFPPTTSGQHLLDKYASTHAGY 267          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Hypothetical (protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VI83_DUNTE)

HSP 1 Score: 243 bits (619), Expect = 8.200e-75
Identity = 118/224 (52.68%), Postives = 155/224 (69.20%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDAR-PLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGE-WLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDF 666
            T+EG+Y  RE S     E  +A+ PL GPNQWP+E LVPG++ +M+++   M+ +G RL  LL++GLGL P  FD  F      LR LHY+ +VS P +GV GAGAH+D+G++TLL TD+VPGLQ+  D   W+DVPP+   FI NLGDML+RWTN   +ST+HRVVN  G ERYS+  FFEPNFDT V C PQ CS E P ++PP  +G +L+ KY+ TH  +
Sbjct:   91 TKEGFYFGREISP----ESPEAKLPLHGPNQWPNEHLVPGYRASMEQYMRAMNELGHRLLRLLALGLGLPPDHFDRFFDRPMIFLRPLHYAPKVSAPSEGVFGAGAHSDYGMLTLLKTDDVPGLQIHTDATGWMDVPPKPECFIINLGDMLERWTNGMYKSTLHRVVNTTGKERYSLACFFEPNFDTIVECLPQCCSPERPPQFPPTTSGQHLLDKYASTHAGY 310          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV59_KLENI)

HSP 1 Score: 238 bits (606), Expect = 9.980e-73
Identity = 121/230 (52.61%), Postives = 149/230 (64.78%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDA-RPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDT--CFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGE-----WLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDF 666
            T+EGYY+ RE       +H DA +PL GPN WP   L+P W+ TM+ +   M  +  +L   + + LGL    F     F      LRLLHY+ E S P +GV GAGAH+DWG++TLL TD VPGLQ+ L+ +     WLDVPP EGAFI N+GDML+RW+ND  RST+HRVV + G ER+SIPFFFEPNFD  V C PQ CS  NPA+YPPV  G YLMGK   TH  +
Sbjct:   99 TKEGYYMGREVPL----DHPDASKPLHGPNVWPDPALLPDWRPTMERYQAAMIQLALKLTDFIGLALGLPEGFFKKPGMFDNPMTVLRLLHYTEEKSAPEEGVFGAGAHSDWGMLTLLKTDSVPGLQICLEKDAENQTWLDVPPVEGAFIVNIGDMLERWSNDLFRSTLHRVVGR-GQERFSIPFFFEPNFDCLVECLPQCCSPSNPAKYPPVTVGEYLMGKLKSTHAGY 323          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Hypothetical (protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S1L0_9CHLO)

HSP 1 Score: 238 bits (606), Expect = 1.520e-72
Identity = 115/224 (51.34%), Postives = 146/224 (65.18%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGEWLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDG 672
            T+EG+Y  R+  A +    + + PL GPNQWP EELVPG++ T + +   M A+G R+  +L++ LGL PA F+  F+     LR LHY A  SDP  GV GAGAHTD+GL+T LATDEVPGLQ+   G W DV PR G  I NLGDML+RWTN   RST+HRVV + G ERYS+  F+EPNF   V C P  C  + P RYPP  AG +++ KY+ TH  + G
Sbjct:  108 TKEGFYFGRDIPADSP---EASLPLHGPNQWPREELVPGYRATAEAYLAAMMALGARMLRVLALSLGLPPAHFERHFTSPMVFLRPLHYDATRSDPDAGVFGAGAHTDYGLLTFLATDEVPGLQIHAGGAWRDVAPRPGCLIVNLGDMLERWTNGRYRSTLHRVVTRGGQERYSVACFYEPNFTARVECLPCCCGPDAPPRYPPTTAGQHILDKYASTHAGYTG 328          
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LKH6_9CHLO)

HSP 1 Score: 237 bits (604), Expect = 3.520e-72
Identity = 116/231 (50.22%), Postives = 152/231 (65.80%), Query Frame = 1
Query:    1 TQEGYYIFREGSAAADGEHDDARPLSGPNQWPSEELVPGWKTTMQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEVSDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGEWLDVPPREGAFICNLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDGNQPDSTT 693
            T+EGYYI RE  A +    +   PL GPN WP E+L+PG++ T + +F  + A+G RL  LL++ L L+P  FD  F      LR LHYSAEVS PG GV GAGAH+D+G++T+LATD  PGLQV + G W+DVP     F+CNLGDML+RWTN   +ST+HRVV+  G +RYSIPFFFEPNF+  V   P   + + PA YPP  AG +L+ KY+ TH  +   +  + T
Sbjct:  105 TKEGYYIGREVPADSP---EAQLPLHGPNLWPPEKLLPGFRATTEAYFSSVTALGHRLLRLLAISLDLEPGHFDPFFDPPMVFLRPLHYSAEVSRPGDGVFGAGAHSDYGMLTVLATDGQPGLQVHVGGAWVDVPAAPRCFVCNLGDMLERWTNGLYKSTLHRVVSTTGRDRYSIPFFFEPNFNAVVEALPCCVTADRPAAYPPTTAGRHLLEKYAATHAGYGNGEAAAAT 332          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10794.690.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Fe2OG5.890e-16795.36dioxygenase domain-containing protein n=1 Tax=Ecto... [more]
Fe2OG2.350e-13579.15dioxygenase domain-containing protein n=2 Tax=Ecto... [more]
Fe2OG2.080e-8055.75dioxygenase domain-containing protein n=1 Tax=Scen... [more]
Fe2OG5.230e-7953.13dioxygenase domain-containing protein n=1 Tax=Chla... [more]
Hypothetical1.450e-7553.13protein n=1 Tax=Chlamydomonas euryale TaxID=148691... [more]
Hypothetical2.130e-7552.68protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 ... [more]
Hypothetical8.200e-7552.68protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 ... [more]
Fe2OG9.980e-7352.61dioxygenase domain-containing protein n=1 Tax=Kleb... [more]
Hypothetical1.520e-7251.34protein n=1 Tax=Chlamydomonas leiostraca TaxID=103... [more]
Fe2OG3.520e-7250.22dioxygenase domain-containing protein n=1 Tax=Mono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10794contigEcto-sp9_F_contig10794:201..4351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score394.4
Seed ortholog evalue3e-107
Seed eggNOG ortholog2880.D7FYW9
KEGG koko:K06901
KEGG TC2.A.1.40
GOsGO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0010015,GO:0010101,GO:0010102,GO:0010468,GO:0019222,GO:0022622,GO:0032501,GO:0032502,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0060255,GO:0065007,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1905392
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGsCOG3491@1,KOG0143@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons6
Model size1067
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10794.690.1prot_Ecto-sp9_F_contig10794.690.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10794 846..3992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928299.1947474-UTR-Ecto-sp9_F_contig10794:200..3161622928299.1947474-UTR-Ecto-sp9_F_contig10794:200..316Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10794 201..316 +
1692277826.7129405-UTR-Ecto-sp9_F_contig10794:200..3161692277826.7129405-UTR-Ecto-sp9_F_contig10794:200..316Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10794 201..316 +
1622928299.2468474-UTR-Ecto-sp9_F_contig10794:832..8451622928299.2468474-UTR-Ecto-sp9_F_contig10794:832..845Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10794 833..845 +
1692277826.7268245-UTR-Ecto-sp9_F_contig10794:832..8451692277826.7268245-UTR-Ecto-sp9_F_contig10794:832..845Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10794 833..845 +
1622928299.3482616-UTR-Ecto-sp9_F_contig10794:3992..43511622928299.3482616-UTR-Ecto-sp9_F_contig10794:3992..4351Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10794 3993..4351 +
1692277826.7806633-UTR-Ecto-sp9_F_contig10794:3992..43511692277826.7806633-UTR-Ecto-sp9_F_contig10794:3992..4351Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10794 3993..4351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928299.2617102-CDS-Ecto-sp9_F_contig10794:845..9921622928299.2617102-CDS-Ecto-sp9_F_contig10794:845..992Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 846..992 +
1692277826.7345154-CDS-Ecto-sp9_F_contig10794:845..9921692277826.7345154-CDS-Ecto-sp9_F_contig10794:845..992Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 846..992 +
1622928299.2776494-CDS-Ecto-sp9_F_contig10794:1464..15391622928299.2776494-CDS-Ecto-sp9_F_contig10794:1464..1539Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 1465..1539 +
1692277826.7437587-CDS-Ecto-sp9_F_contig10794:1464..15391692277826.7437587-CDS-Ecto-sp9_F_contig10794:1464..1539Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 1465..1539 +
1622928299.291067-CDS-Ecto-sp9_F_contig10794:1935..20391622928299.291067-CDS-Ecto-sp9_F_contig10794:1935..2039Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 1936..2039 +
1692277826.7525804-CDS-Ecto-sp9_F_contig10794:1935..20391692277826.7525804-CDS-Ecto-sp9_F_contig10794:1935..2039Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 1936..2039 +
1622928299.3050876-CDS-Ecto-sp9_F_contig10794:2822..29251622928299.3050876-CDS-Ecto-sp9_F_contig10794:2822..2925Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 2823..2925 +
1692277826.7609491-CDS-Ecto-sp9_F_contig10794:2822..29251692277826.7609491-CDS-Ecto-sp9_F_contig10794:2822..2925Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 2823..2925 +
1622928299.3210664-CDS-Ecto-sp9_F_contig10794:3842..39921622928299.3210664-CDS-Ecto-sp9_F_contig10794:3842..3992Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 3843..3992 +
1692277826.7694638-CDS-Ecto-sp9_F_contig10794:3842..39921692277826.7694638-CDS-Ecto-sp9_F_contig10794:3842..3992Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10794 3843..3992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10794.690.1

>prot_Ecto-sp9_F_contig10794.690.1 ID=prot_Ecto-sp9_F_contig10794.690.1|Name=mRNA_Ecto-sp9_F_contig10794.690.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=193bp
MQEHFVRMHAVGERLAGLLSVGLGLDPAVFDTCFSEFAHTLRLLHYSAEV
SDPGKGVMGAGAHTDWGLMTLLATDEVPGLQVRLDGEWLDVPPREGAFIC
NLGDMLQRWTNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQF
CSEENPARYPPVKAGAYLMGKYSQTHQDFDGNQPDSTTSCTS*
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mRNA from alignment at Ecto-sp9_F_contig10794:201..4351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10794.690.1 ID=mRNA_Ecto-sp9_F_contig10794.690.1|Name=mRNA_Ecto-sp9_F_contig10794.690.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4151bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10794:201..4351+ (Ectocarpus species9 EcSCA_722f female)
ACGCAGGAAGGGTACTACATCTTCCGAGAAGGGAGTGCTGCTGCCGATGG CGAACACGATGATGCCAGGCCACTCTCAGGCCCCAACCAGTGGCCATCAG AGGAACTGGTCCCAGGGTGGGTAAAACAGAACCACAACACGTGTCTCTCT TCTTGTTGTACACCTATTTCGCAAGGTGTCTTCCCGTACCTACTAGAACG CTCCCCTTCCTCTCATTCTTCGTGGAAAGCTACAATTGACGATGCCCTGG AAATCTAGATAACGTGCGGAAACGACGTCCAGGATGAGTGGGATGGCGGG CTCACCACATTATATTCAGTAGGTGGACGCAGTCAAGGTTTGAGGAAAGT CGCCTCAGATACGCGCAGGTTCTCAAGGCTCTGTATCTGTACATACATGG CACACCTTTTTTTCGGGGGTCAGATTCTCACCAACATACGACAGAAATAG GCGCCTTTTTCGTCTGAGAGTACGCAGGGAAGGATGGGTGCGGTCAGTAT GGATAGCCCCATGTGGGCGCAATGGGCGACTATTTGTCCAGCGGCTTACC ACCGGGGAATTTGCATCCAAACGAAAAGACCGGGTATGTGAGTGCCCCCT CCCTGCCTCCTACCCCTACGTACAACCCGGAGGTGGAAGACGACGATGCA AGAGCATTTCGTCAGGATGCACGCCGTGGGGGAGAGGCTAGCCGGGCTCC TGTCGGTCGGTCTTGGGCTAGATCCTGCTGTCTTCGACACGTGCTTCTCG GAATTCGCGCACACCCTGCGCTTACTTCACTACTCAGCCGAGGTATTGAA CCACATAGATAAGGTCGGCGGTTACTCATATGGGAGTAAGTGCGTCTGGG TTGGGGTGCCTGCTCGCGTCGGGTGATCAGAAGGGACGCCAGTATTCAGG CTCTTGGTTGAAACTTTCCCAAATGGAAGGGGTTTCCAAGAAGTGTTTCG AGCTCCGAGTGCACCATTCATCAGGGGCGAGCATGAAATGGGAAAAATTC AATGTTGCAGCCGCGTGTTTCGCTTCAGAGGCACCTCCCAGAAGAGTTGG CCTTCTCCTACACCCGGTAGGTGCCTAGGGGCGGGCGTGTGGGAGGGCGC GAGAGGATCAAGCAAGTCCTGCGCACGAGTAAAGCTTTGTTGGGATCTAG TGTGCAGGAGCGGACGGAGCTTTCGCAAGCAATCATGTTTCGCCGTCTTG CTTGTCCCACGTTCCACAACGAACCGACTACATAGTCCACCTTCTTGCTC GCTATCGGTGGCAGGTTTCGGACCCAGGGAAAGGCGTTATGGGTGCGGGG GCGCACACGGATTGGGGCCTGATGACGTTGCTCGCCACGGTGAGATGGCA AGCCGCGAGCCGCCCTCCCCTGGGTTGGAAGAACGTTCCCAAGTCCTTGT TTCCCCATACGATGCGGAGGGGTTCCAAGAATACCTTTCTTCAAAACCGC AGAAAAAGTCGGGTTACTTGTCTGTGTTTGGCGGGTTGAAGGTACACCGT GAGGCCAACCGCGTCATTCGAACCGCGTTCATTCATTCCTTCTTCAATCC CTTACGCATAATGGTGCTGTCATCCTGGTTTTCGCGGTCGTATTCTGCTG CTATATGTGGTGTTCCTGTTGGCTATGGTGGTGGCAATGGCAATGCTTCC CCCAATAGAATGCACTCGTCCAACAAGTTTATCATTGTTTCGTGCACGGT TTATATATACTGTATCGCTCGTCGGTTATGTCCAGGATGAGGTGCCGGGG CTGCAGGTGAGGCTGGACGGGGAGTGGTTGGACGTGCCTCCTAGAGAGGG GGCCTTCATTTGCAACCTCGGCGACATGCTCCAGAGATGGTGAGACATGC TTCGTTGTTCCGTCAACGCGGTGTCTTCTTCCCACTCCGCTGTCGCTCCA GTATCAATCGTTTGATGGGAACGCGTTCTTGGGCGTATTAACGAGGGCCA ACATAGCGTGTGTGATTGGTTGTCAAAGTCGTTGTCGAAAACCTGGCGAT ACATCCAGCGTTTTACAGTGAGTATTGTCCACGCGCTAGTTTTGAAAGTA GCGCGCGGCTTCGGGAGACCGGCTGTCAGAGGTTGAGCATGGCCTCTAGG ACGAGCGAAGCTCTCTATAATAGTTTACGGATATTTGACGATGGTCCTCA GCAACGTGGCGTCCCTCAACGGCATGTTGTGGTGACTGAGCAGGGGCACC GAAGGCTTGTTTCCCGCTCGTTTCGACGATGATTACCATGCGACGCAGAC TCAAAGCACGACACATGATCTTCCGCTCGCCCAATTTCTCTCGGATCCAC AAGTAAGTACAAATATTCGGAGATTCGCTTTCATTGTGATAACGATGCAA AGGTCATGAGTTGCCGGCGACGAGTAGCCCAAGATATTCCTCCGGAGGCA CACGATCGTAATCTTTGAACCCATTTAAGGTCCGTGTTTGGCGGAACAGG CGTACGGCAACGGTGCGCATCCATGTATCCTCACGTCGCCACATGTTCTC CTGTCGCATTGTCCCTTTCACCAAACCCAGGATTAGTCCCGTGCATGTTG GCGTTAGCAAGAAAGCTGAAACGTGTGCGCCGTGTTGTTGCGTTTTTATT GCCGCACTGCCCAATTTCCCAGGACAAACGACGACCTGCGATCGACGGTA CACCGGGTCGTTAACAAGCTGGGCCTCGAGCGCTACAGCATCCCGTTCTT CTTCGAGCCGAACTTCGACACGGAGGTATGCAAGTTCCATATCTGGCCGC TCTTGGTTGACGTGCAGCGGTACATGCGGCCATGCAAACCGCCAATACTA TGTAGCAATTTTTTGTGCTCCAAGCTCAACGTAGGAAGGGCCCGAGCAGT CATTCGATGAGTGATAGCTTACCATGTGCAGACCCTACCCGGAGCGGCGA TGATTTGCTCTAGTTGCGCTCGCGTCTGCTCAACAACGTGCGTCTGTTCA GCGCCACCTTCGTGAAATATGGTACAATATCTGAGCGAGCCTTCACTCCT CTTTTTGGTAGGGTTTGAGCAAGAAAACACAGGATTTCCTGGTCTACCGT GATACGTATTGTAGTTCTCCTGGGCACAAAGAGAGGCAAACGTGTGCTCG ATAGTTTTCCCAGGTGCAGCTGACCTCACCACCATGCATGTCCGTTTTGG GCAATTGTACTGGAGTGAACGGGCTACAGTAGTTGTGGTATGGTCGATCC TTGGTCCCACGATAAAACACAACGTCTACGCGGGGTCTCCCAATTGTTGC GATTGATTTGTAGTCTATCGTGTAGTGGGCTGTTTCTGAAGGCTGGTAGA GCCATTTCAGACCGCCATCCAGTACCGTATTTCGTGCTCCCGCAGGACTT CCGTAGCCAAAGGTTATATCACAAATGAAAAACTTTAGTCGCTCCGCCCT GGCATGAACTACTACTGTAGCTTGGTACGTACGTATCCGTTATGTATGAT GAAAACAACCACGAGATCTCTCTGTGTGTAGGCGCCCCCCTGGATGCTGC GGGAGGCTATGCGGCGTTCCCAATGTGCAGCAAATTCGCCCCTTGCTTCG TACCACCGTAGTTTCCGAGCGTGTGCTCGAAATAGAAAAAAAAAACGTGC CTCGGTGCCCCTGCTACTGTGTGTACATACATACCTTGTCAGGTGGCGTG TTTCCCGCAGTTTTGCTCGGAAGAGAACCCAGCGAGGTACCCGCCAGTGA AGGCGGGAGCGTACCTTATGGGAAAATACTCTCAGACGCATCAGGATTTC GATGGAAACCAGCCCGACAGCACTACTTCTTGTACATCGTAGACAGAATG AACCACATGTTGTATTATTTGGGATATGCTGCGTTCCGTATGAGCGCCAA GACAGCGGCGATTTCATGTATATATGTAGCAGTAGATCGACTTGAATTTG GCTATAATTCTCGACAGGTCTAGACCTAGACATATTTGTTCTGCCCCGCC CGGTCATCGTTGCGCAGGTACCCTCTTGTAGGGTGGGGGCTTGGATGTTT CTTCTGTCAATTTCTCATGCATGCGTGGACGTTTTTCGGTATTGGGCAGC TTCCTCTGTCAACCTTGTAGCTGCTTGGGGGGGGGTGTACTCATAGTCGT GCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGA C
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10794:201..4351+

>mRNA_Ecto-sp9_F_contig10794.690.1 ID=mRNA_Ecto-sp9_F_contig10794.690.1|Name=mRNA_Ecto-sp9_F_contig10794.690.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10794:201..4351+ (Ectocarpus species9 EcSCA_722f female)
ATGCAAGAGCATTTCGTCAGGATGCACGCCGTGGGGGAGAGGCTAGCCGG
GCTCCTGTCGGTCGGTCTTGGGCTAGATCCTGCTGTCTTCGACACGTGCT
TCTCGGAATTCGCGCACACCCTGCGCTTACTTCACTACTCAGCCGAGATG
CAAGAGCATTTCGTCAGGATGCACGCCGTGGGGGAGAGGCTAGCCGGGCT
CCTGTCGGTCGGTCTTGGGCTAGATCCTGCTGTCTTCGACACGTGCTTCT
CGGAATTCGCGCACACCCTGCGCTTACTTCACTACTCAGCCGAGGTTTCG
GACCCAGGGAAAGGCGTTATGGGTGCGGGGGCGCACACGGATTGGGGCCT
GATGACGTTGCTCGCCACGGTTTCGGACCCAGGGAAAGGCGTTATGGGTG
CGGGGGCGCACACGGATTGGGGCCTGATGACGTTGCTCGCCACGGATGAG
GTGCCGGGGCTGCAGGTGAGGCTGGACGGGGAGTGGTTGGACGTGCCTCC
TAGAGAGGGGGCCTTCATTTGCAACCTCGGCGACATGCTCCAGAGATGGA
TGAGGTGCCGGGGCTGCAGGTGAGGCTGGACGGGGAGTGGTTGGACGTGC
CTCCTAGAGAGGGGGCCTTCATTTGCAACCTCGGCGACATGCTCCAGAGA
TGGACAAACGACGACCTGCGATCGACGGTACACCGGGTCGTTAACAAGCT
GGGCCTCGAGCGCTACAGCATCCCGTTCTTCTTCGAGCCGAACTTCGACA
CGGAGGACAAACGACGACCTGCGATCGACGGTACACCGGGTCGTTAACAA
GCTGGGCCTCGAGCGCTACAGCATCCCGTTCTTCTTCGAGCCGAACTTCG
ACACGGAGGTGGCGTGTTTCCCGCAGTTTTGCTCGGAAGAGAACCCAGCG
AGGTACCCGCCAGTGAAGGCGGGAGCGTACCTTATGGGAAAATACTCTCA
GACGCATCAGGATTTCGATGGAAACCAGCCCGACAGCACTACTTCTTGTA
CATCGTAGGTGGCGTGTTTCCCGCAGTTTTGCTCGGAAGAGAACCCAGCG
AGGTACCCGCCAGTGAAGGCGGGAGCGTACCTTATGGGAAAATACTCTCA
GACGCATCAGGATTTCGATGGAAACCAGCCCGACAGCACTACTTCTTGTA
CATCGTAG
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