mRNA_Ecto-sp9_F_contig1079.687.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1079.687.1
Unique NamemRNA_Ecto-sp9_F_contig1079.687.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1079.687.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1079contigEcto-sp9_F_contig1079:16870..17605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1079.687.1prot_Ecto-sp9_F_contig1079.687.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1079 16970..17605 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928298.6382186-UTR-Ecto-sp9_F_contig1079:16869..169691622928298.6382186-UTR-Ecto-sp9_F_contig1079:16869..16969Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1079 16870..16969 -
1692277826.4799488-UTR-Ecto-sp9_F_contig1079:16869..169691692277826.4799488-UTR-Ecto-sp9_F_contig1079:16869..16969Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1079 16870..16969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928298.6497128-CDS-Ecto-sp9_F_contig1079:16969..170891622928298.6497128-CDS-Ecto-sp9_F_contig1079:16969..17089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 16970..17089 -
1692277826.4884717-CDS-Ecto-sp9_F_contig1079:16969..170891692277826.4884717-CDS-Ecto-sp9_F_contig1079:16969..17089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 16970..17089 -
1622928298.6629395-CDS-Ecto-sp9_F_contig1079:17482..176051622928298.6629395-CDS-Ecto-sp9_F_contig1079:17482..17605Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 17483..17605 -
1692277826.4998705-CDS-Ecto-sp9_F_contig1079:17482..176051692277826.4998705-CDS-Ecto-sp9_F_contig1079:17482..17605Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 17483..17605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1079.687.1

>prot_Ecto-sp9_F_contig1079.687.1 ID=prot_Ecto-sp9_F_contig1079.687.1|Name=mRNA_Ecto-sp9_F_contig1079.687.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=81bp
QGSRRKPNHPRTLDLEERSDSSVFDESSHEQRDDETDHERKEQAGSINIK
KSSNAGLNLNEATSDILRSRRVCLAKTEAG*
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mRNA from alignment at Ecto-sp9_F_contig1079:16870..17605-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1079.687.1 ID=mRNA_Ecto-sp9_F_contig1079.687.1|Name=mRNA_Ecto-sp9_F_contig1079.687.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=736bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1079:16870..17605- (Ectocarpus species9 EcSCA_722f female)
CAGGGAAGCCGCAGAAAACCAAACCACCCACGGACGTTGGACCTGGAGGA
AAGGTCAGATTCTTCCGTTTTCGACGAGTCCTCGCATGAGCAACGCGACG
ACGAGACGGACCATGAACGAAAGGCGAGTGGCTCTAAGACAACGAGCAAA
GTATCTACATACAACCTGGGGCGTGACTTGAATCAGCCTCAAGCCCGAGA
ACCGATGTTTATTCGAAAATCTTCGTCGGCGGAACTTGATTCGATTGAGA
GCAGACGGGTCGTGTATTGGCCCCAAAACGCCAGTTCGTTTCAAATCGTG
GAGTTACGGAAGAAGCTTCCGATCTTTCCAGCGGGCATCGCATCAGCGCC
TGAACGCACCGAGAAGCGGTCCACTTCATGGCGAAGCAACTCTGAAGCTT
TTGATGAACCATGTGTTGGCGTTCGCATGAGGCATCCAACAAAGTGAATA
GAGATTCCTGAAAGTGCGAAATACTTGCGTCCCGTTGCTCTGCGGTGTGT
GTCGATTGATAATCAGGAGCAAGCGGGCAGCATCAACATCAAGAAGAGTA
GCAACGCCGGCCTGAACCTGAACGAAGCAACGTCAGACATACTCCGATCG
CGAAGGGTGTGTTTAGCGAAAACTGAGGCCGGTTGAAATCTTCTAGGAGG
TGCTCAAGTGTCGCCATCAGCGGCATCACGCAAAAGTAGCAAGAACGTCG
GGGCTGGAGAGCAGGGTCGTATTGCAAGCAAGAAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1079:16870..17605-

>mRNA_Ecto-sp9_F_contig1079.687.1 ID=mRNA_Ecto-sp9_F_contig1079.687.1|Name=mRNA_Ecto-sp9_F_contig1079.687.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1079:16870..17605- (Ectocarpus species9 EcSCA_722f female)
CAGGGAAGCCGCAGAAAACCAAACCACCCACGGACGTTGGACCTGGAGGA
AAGGTCAGATTCTTCCGTTTTCGACGAGTCCTCGCATGAGCAACGCGACG
ACGAGACGGACCATGAACGAAAGCAGGGAAGCCGCAGAAAACCAAACCAC
CCACGGACGTTGGACCTGGAGGAAAGGTCAGATTCTTCCGTTTTCGACGA
GTCCTCGCATGAGCAACGCGACGACGAGACGGACCATGAACGAAAGGAGC
AAGCGGGCAGCATCAACATCAAGAAGAGTAGCAACGCCGGCCTGAACCTG
AACGAAGCAACGTCAGACATACTCCGATCGCGAAGGGTGTGTTTAGCGAA
AACTGAGGCCGGTTGAGAGCAAGCGGGCAGCATCAACATCAAGAAGAGTA
GCAACGCCGGCCTGAACCTGAACGAAGCAACGTCAGACATACTCCGATCG
CGAAGGGTGTGTTTAGCGAAAACTGAGGCCGGTTGA
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