mRNA_Ecto-sp9_F_contig1079.685.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1079.685.1
Unique NamemRNA_Ecto-sp9_F_contig1079.685.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1079.685.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1079contigEcto-sp9_F_contig1079:1280..3786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size580
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1079.685.1prot_Ecto-sp9_F_contig1079.685.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1079 1502..3786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928298.5723584-UTR-Ecto-sp9_F_contig1079:1279..15011622928298.5723584-UTR-Ecto-sp9_F_contig1079:1279..1501Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1079 1280..1501 -
1692277826.4537373-UTR-Ecto-sp9_F_contig1079:1279..15011692277826.4537373-UTR-Ecto-sp9_F_contig1079:1279..1501Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1079 1280..1501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928298.5850174-CDS-Ecto-sp9_F_contig1079:1501..17801622928298.5850174-CDS-Ecto-sp9_F_contig1079:1501..1780Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 1502..1780 -
1692277826.4611735-CDS-Ecto-sp9_F_contig1079:1501..17801692277826.4611735-CDS-Ecto-sp9_F_contig1079:1501..1780Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 1502..1780 -
1622928298.5973458-CDS-Ecto-sp9_F_contig1079:3708..37861622928298.5973458-CDS-Ecto-sp9_F_contig1079:3708..3786Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 3709..3786 -
1692277826.4689934-CDS-Ecto-sp9_F_contig1079:3708..37861692277826.4689934-CDS-Ecto-sp9_F_contig1079:3708..3786Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1079 3709..3786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1079.685.1

>prot_Ecto-sp9_F_contig1079.685.1 ID=prot_Ecto-sp9_F_contig1079.685.1|Name=mRNA_Ecto-sp9_F_contig1079.685.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
HRRKLAHPLQQAGQAGRSTRWPYWVRGGLVPTWCRALDQSFACSGNEPTL
GEQESKGTGQPIASIIWRAWGLLTLTGLAATEPRLRFRAIISTAPLPQRT
PQVTVFRRMPRPLRRESS*
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mRNA from alignment at Ecto-sp9_F_contig1079:1280..3786-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1079.685.1 ID=mRNA_Ecto-sp9_F_contig1079.685.1|Name=mRNA_Ecto-sp9_F_contig1079.685.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2507bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1079:1280..3786- (Ectocarpus species9 EcSCA_722f female)
CACAGGAGAAAACTAGCACATCCTCTTCAGCAGGCAGGCCAGGCCGGAAG
GTCAACACGCTGGCCGTACTGGGTTCGGGTGAGTGCGGCCAAGTGGCTAC
TGTCCTGTGTTCGTTGCTGACATACGGCATGTACTTGATTGCAGAACGGC
ATGCTGCCAAGTCGTCGGGAAAGCCGCTGTCTGTTGAGCTGGATAATATC
TGTGCATTTACCTCGCACAGACGGACGCAATTTGCTCCTTTTTGAATCGC
GCATCTTCTGTGAGTGAAGATCTCTCTCTCCCTCTCCTCCTACTGCTGTA
CAGTAGCCCTCCCCACAAAGCCTGAACCAAACCCACATGTTATTTAATCC
CTGAGGAAATAGCCCCCTGCAGTAGATCGCTTAGTAGTTTTGCAGCTCTG
TGCGCTTTGCCCCGTTTATGTCCGCCCTCCATGTTCTGTACTCCTCCCCT
CGCCCGTAGCAGCCTGTAGACGTACCCCTCCCCTCGCCGGAACACAAGTG
CGTCCTGAGCCTACGCGTGTCTTTATGTACGCCTAAAAATCGTCAGTAAT
GAATACGTTTCGCCAACGTACCCTCTTCACCCCCAACAACGCGGAAACAA
CATGGGACACGCAGAACAAGAGAACAACAGTCCACGCAACCTTACTTGTG
CCAACCAGGCACCTTTGTGCATGTCCAGTCGTTGTCCTCCATTCCGGGAC
CCCTCCTCCCGGTATTGCCTCTTGAGGTGTCACGTGCGCTTCGGACACTC
GGGTGTTTTGCAGGTGGCCGCGAAAAACATCACGGGGGGCTCGAGGGCAC
AGACTGGTGGTGGTTATCGTTTGCCCTGAAATGCATGTGTCGATTCAGTC
TCGGTTTGCTGGCAGCTTTCCGGCGAAACAGTAGTAACCTGTCGCGTCGA
AAGCTCTCGGGGATTCAGAGCAGGATCCCGAGGGCTTTTCCACGCGACAG
ACTACTGTTCGCCGGAGAACCTCCAGCAAGCGCGACTGCATCGACACATG
CTTCAGGGAAACGATAACCACACCACCAGTCTGTGCCTCCGAGCCCCCTC
GTCAAGTTTTTAGCAGCGACCTGCAAGACACCCGAGCGTCAGAAGCGCGC
GCGACACTCCAAGAGGCAACGGCGTGAGAAGGGGTCCCCGTAGTGGAGGA
CAACATCCAGCCAACGCCTGGAGGTGCCAAACGGCGCCTGGGTTGTTGAG
CGCCTGTTGATTGTTTTCTTATTCGGCGTGCCGACGTATTTGTCTGCTGT
TGGCGTTCCGTTACCGGAACGTAGTCTGAGTCCCGAGACGTAGCGAAGCC
TGCCCGCCCCTCCCCGCCCCCAGCAACGAAGGGCGTCTATGGTGGCGTGG
ATCAGGGGATGAAGCGGCATGCTGGAGCCCCCCCCCAAACGTGTGTGTCC
CGGGTGTCGTCATCGAACCGCGATGGGCGTCGCTAGGTGGCGCCGGCTCA
TGCGGCCTGTTGCAAGGCGGGAAGGCCCGCGCCAGGGCTTGGCATGGGCC
TCTTCAGCTGATACGATATGCGTTGACACCGAGAGTGTGAGCCTAGAAAC
AATATCGCAAGAGGGACGAACAAGATACGGAAGCACCTCCTCCCGAATAT
TTTCGTACGTCAGGGAAACAACACCACCCGTTCTCTAATCCCACTCGGCG
GGACAATGGGAATGCCAAACCTGCCGTGTACTCGTTCTTTCTAACCTTTC
ACCCACTGAACTCTTTTCTGGTTTAGATTCTACACCCCCTTCCCCGGTTG
TTCCATGCAGAGGGGGGGGTCACGGTGCCTCTAGTACCGGCACGGCCCCC
GGAAGATTCGCGGCGCAGCTAGTGAGATTCAGACCGAAAAGCCGGGATTT
CACATCCGCTGGGGAAGAGGCGTAATCTTGGTCATTTTCTGGCAGAGAGA
TGTTGTTCCTGTTGCGGTCAGTCCAGTCACCATCGACCATCGCCGCTGCC
GCCAAACGACAGAAGCTATCGTTCGCCCCCGTCTCCCTGTGGTCTTGTTC
TCCCAGGGTGGGCTCGTTCCTACTTGGTGCAGAGCTCTGGACCAGAGCTT
CGCGTGCAGCGGTAACGAACCCACTCTGGGCGAGCAAGAGAGCAAGGGGA
CAGGGCAACCCATCGCTTCTATCATTTGGCGGGCGTGGGGATTGTTGACG
CTGACAGGGCTGGCTGCAACGGAGCCAAGACTTCGCTTCCGGGCGATCAT
CAGCACGGCGCCTCTGCCCCAGCGAACCCCCCAAGTCACGGTGTTTCGAC
GAATGCCTCGCCCTCTACGCCGAGAATCTTCTTGAGACCATACCGGTAAA
AAGGCCCCGACGGCCAGCGTGAAAATCACGAATGTACGTATGAAGATCTT
AAGTGGATGAAGGACCTCAAGAAGGAACACGTGTCGGAGTCCTACTTCCT
GCTAGAAGGTGTCAACGGTGTTCTCATCTCTCCGTGGGCTGCTGCATATA
CCAAGAGAGGTGATGCTTCAATAGAATTTCTCTCTTGTGATTCTGTGTCC
GCTCACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1079:1280..3786-

>mRNA_Ecto-sp9_F_contig1079.685.1 ID=mRNA_Ecto-sp9_F_contig1079.685.1|Name=mRNA_Ecto-sp9_F_contig1079.685.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1079:1280..3786- (Ectocarpus species9 EcSCA_722f female)
CACAGGAGAAAACTAGCACATCCTCTTCAGCAGGCAGGCCAGGCCGGAAG
GTCAACACGCTGGCCGTACTGGGTTCGGCACAGGAGAAAACTAGCACATC
CTCTTCAGCAGGCAGGCCAGGCCGGAAGGTCAACACGCTGGCCGTACTGG
GTTCGGGGTGGGCTCGTTCCTACTTGGTGCAGAGCTCTGGACCAGAGCTT
CGCGTGCAGCGGTAACGAACCCACTCTGGGCGAGCAAGAGAGCAAGGGGA
CAGGGCAACCCATCGCTTCTATCATTTGGCGGGCGTGGGGATTGTTGACG
CTGACAGGGCTGGCTGCAACGGAGCCAAGACTTCGCTTCCGGGCGATCAT
CAGCACGGCGCCTCTGCCCCAGCGAACCCCCCAAGTCACGGTGTTTCGAC
GAATGCCTCGCCCTCTACGCCGAGAATCTTCTTGAGGTGGGCTCGTTCCT
ACTTGGTGCAGAGCTCTGGACCAGAGCTTCGCGTGCAGCGGTAACGAACC
CACTCTGGGCGAGCAAGAGAGCAAGGGGACAGGGCAACCCATCGCTTCTA
TCATTTGGCGGGCGTGGGGATTGTTGACGCTGACAGGGCTGGCTGCAACG
GAGCCAAGACTTCGCTTCCGGGCGATCATCAGCACGGCGCCTCTGCCCCA
GCGAACCCCCCAAGTCACGGTGTTTCGACGAATGCCTCGCCCTCTACGCC
GAGAATCTTCTTGA
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