mRNA_Ecto-sp9_F_contig10787.684.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10787.684.1
Unique NamemRNA_Ecto-sp9_F_contig10787.684.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10787.684.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F9_ECTSI)

HSP 1 Score: 615 bits (1587), Expect = 8.580e-214
Identity = 389/465 (83.66%), Postives = 397/465 (85.38%), Query Frame = 3 
Query:   15 MFSSSVIRRGRCSLARPPAATRCNAIVVDRGQPQTSRKGQQHAAIRRCLAGAAATVPPARGGGVASGEAAAGKVQGSIASCSGTKHNPILGLG-NEHQSFLSETTGGTVNWRRHASTLSWGDKCCLSLRPGAASSALRSRALQAGGPALRLDRRGFSAGQGPDSDXXXXXXXXXXXXXXXXXXXXXXXSTLFGASSGAETAAKTEE-----------------PRIPRNRRGGKGERNPSPTEAAQAVAVADGEAGTPAPSPEASEAPPKKAPKAXXXXKRRGNQGKRNHSPTAAAXXXXXXXXEEAGTTATEAAADPPAXNKAPKAKAPRKRRGGQGESSRSPNAGPKDAERKGAAADAAEAGTDPRVPEERKASFERARRAGVARRIEEGGGVPRDSGRGSGXXXXXXXXXXXXXXXXXXX--SPFPWKEAEKPPFTWQDPDAPVVPKPFLAGSGADGEKGGA 1349
            MFSSSVIRRGRCSLARPPAATRC  IVVDRGQPQTSRKGQQHAAI RC AGAAAT PPARGGG  SGEAAAGKVQGSIASC GTKHN +LG G  +HQ FLSETTGGTVNWRRHASTLS GD CCLSLRPGAASSALRSR+LQ GGPAL+LDRRGFSAGQGPDSD       XXXXXXXXXXXXXXXXSTLFGASSGA+TAAKTEE                 PRIPRNRRGGKGERNPSPTEA QAVAVADG+AGTPAPSPEASEAPPKKAPKA    KRRGNQ KRN SPTAAA  XXXX  EEAGTTATEAAADP  XNKAPKAKAPRKRRGGQGESSRSPNAGPKDAERKGAAA+AAEAGTDPRVP+ERKASFERARRAGVARRIEEGGGVPRDS  GSGXXXXX    XXXXX       SPFPWKEAE PPFTWQDPDAPVVPKPFL GSGADGEKGGA
Sbjct:    1 MFSSSVIRRGRCSLARPPAATRCKVIVVDRGQPQTSRKGQQHAAIHRCPAGAAATAPPARGGGAPSGEAAAGKVQGSIASCCGTKHNLVLGPGIKQHQYFLSETTGGTVNWRRHASTLSRGDNCCLSLRPGAASSALRSRSLQTGGPALQLDRRGFSAGQGPDSDHDGGYEYXXXXXXXXXXXXXXXXSTLFGASSGAKTAAKTEEAGALTAVKEPPAKKNTKPRIPRNRRGGKGERNPSPTEAVQAVAVADGDAGTPAPSPEASEAPPKKAPKAKTPRKRRGNQVKRNPSPTAAAQAXXXXDGEEAGTTATEAAADPXXXNKAPKAKAPRKRRGGQGESSRSPNAGPKDAERKGAAANAAEAGTDPRVPKERKASFERARRAGVARRIEEGGGVPRDSDSGSGXXXXXEADSXXXXXEGSVPDESPFPWKEAETPPFTWQDPDAPVVPKPFLGGSGADGEKGGA 465
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BLAST of mRNA_Ecto-sp9_F_contig10787.684.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDW4_9PHAE)

HSP 1 Score: 613 bits (1581), Expect = 9.050e-213
Identity = 396/474 (83.54%), Postives = 405/474 (85.44%), Query Frame = 3 
Query:   15 MFSSSVIRRGRCSLARPPAATRCNAIVVDRGQPQTSRKGQQHAAIRRCLAGAAATVPPARGGGVASGEAAAGKVQGSIASCSGTKHNPILGLGNE-HQSFLSETTGGTVNWRRHASTLSWGDKCCLSLRPGAASSALRSRALQAGGPALRLDRRGFSAGQGPDSDXXXXXXXXXXXXXXXXXXXXXXXSTLFGASSGAETAAKTEE-----------------PRIPRNRRGGKGERNPSPTEAAQAVAVADGEAGTPAPSPEASEAPPKKAPKAXXXXKRRGNQGKRNHSPTAAAXXXXXXXXEEAGTTATEAAADPPAXNKAPKAKAPRKRRGGQGESSRSPNAGPKDAERKGAAADAAEAGTDPRVPEERKASFERARRAGVARRIEEGGGVPRDSGRGSGXXXXXXXXXXXXXXXXXXXSPFPWKEAEKPPFTWQDPDAPVVPKPFLAGSGADGEKGGAAAGAEAKSTGG 1382
            MFSSSVIRRGRCSLARPPAATRCNAIVVDRGQPQTSRKGQQHAAI RCLAGAAAT  PARGGGVASGE AAGKVQ SI SC GTKHN +L LGNE HQSFLSET+GGTVNWRRHASTLS G+  CLSLRPGAASSALRSRALQAGGPALRLDRRGFSAGQGPDS XXXXXXXXXXXXXXXXXXXXXXXSTLFGAS GAET AKT+E                 PRIPRNRRGGKGERNPSPTEAAQAVA ADGEAGTPAPSPEAS AP K+APKA    KRR NQGKR+ SP AAA        EE GT ATEAAA+PPA NKAPKAKAPRKRRGGQ ES+RSPNAGP DAERK AAADAAE GTDPRVPEERKASFERARRAGVARRIE+GGGVPRDS  GSG       XXXXXXXXXXXXSPFPWKEAE PPFTWQDPDAPVVPKPFLAGSGADGEKGGAAAGAEAK TGG
Sbjct:    1 MFSSSVIRRGRCSLARPPAATRCNAIVVDRGQPQTSRKGQQHAAIHRCLAGAAATASPARGGGVASGEEAAGKVQASITSCCGTKHNLVLRLGNEQHQSFLSETSGGTVNWRRHASTLSRGEYYCLSLRPGAASSALRSRALQAGGPALRLDRRGFSAGQGPDSXXXXXXXXXXXXXXXXXXXXXXXXSTLFGASRGAETVAKTKEAGAPAAVKEPPAKRNTKPRIPRNRRGGKGERNPSPTEAAQAVAEADGEAGTPAPSPEASGAPLKRAPKAKTPRKRRANQGKRDPSPAAAAQAVEAADGEEVGTAATEAAAEPPAGNKAPKAKAPRKRRGGQSESARSPNAGPTDAERKRAAADAAEEGTDPRVPEERKASFERARRAGVARRIEDGGGVPRDSDSGSGSGSEADSXXXXXXXXXXXXSPFPWKEAETPPFTWQDPDAPVVPKPFLAGSGADGEKGGAAAGAEAKITGG 474
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10787.684.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.580e-21483.66protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.050e-21383.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10787contigEcto-sp9_F_contig10787:2088..3529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score625.9
Seed ortholog evalue1.5e-176
Seed eggNOG ortholog2880.D7G9F9
EggNOG OGs2C3TE@1,2S2UE@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_000790.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons2
Model size1393
Cds size1377
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10787.684.1prot_Ecto-sp9_F_contig10787.684.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10787 2102..3529 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928298.5092788-UTR-Ecto-sp9_F_contig10787:2087..21011622928298.5092788-UTR-Ecto-sp9_F_contig10787:2087..2101Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10787 2088..2101 +
1692277826.428626-UTR-Ecto-sp9_F_contig10787:2087..21011692277826.428626-UTR-Ecto-sp9_F_contig10787:2087..2101Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10787 2088..2101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928298.524654-CDS-Ecto-sp9_F_contig10787:2101..27161622928298.524654-CDS-Ecto-sp9_F_contig10787:2101..2716Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10787 2102..2716 +
1692277826.438109-CDS-Ecto-sp9_F_contig10787:2101..27161692277826.438109-CDS-Ecto-sp9_F_contig10787:2101..2716Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10787 2102..2716 +
1622928298.539155-CDS-Ecto-sp9_F_contig10787:2767..35291622928298.539155-CDS-Ecto-sp9_F_contig10787:2767..3529Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10787 2768..3529 +
1692277826.4457386-CDS-Ecto-sp9_F_contig10787:2767..35291692277826.4457386-CDS-Ecto-sp9_F_contig10787:2767..3529Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10787 2768..3529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10787.684.1

>prot_Ecto-sp9_F_contig10787.684.1 ID=prot_Ecto-sp9_F_contig10787.684.1|Name=mRNA_Ecto-sp9_F_contig10787.684.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=459bp
MFSSSVIRRGRCSLARPPAATRCNAIVVDRGQPQTSRKGQQHAAIRRCLA
GAAATVPPARGGGVASGEAAAGKVQGSIASCSGTKHNPILGLGNEHQSFL
SETTGGTVNWRRHASTLSWGDKCCLSLRPGAASSALRSRALQAGGPALRL
DRRGFSAGQGPDSDHDGDDEYDYSSGDSGSDSECESESTLFGASSGAETA
AKTEEPRIPRNRRGGKGERNPSPTEAAQAVAVADGEAGTPAPSPEASEAP
PKKAPKAKTPRKRRGNQGKRNHSPTAAAQAAEAADGEEAGTTATEAAADP
PAANKAPKAKAPRKRRGGQGESSRSPNAGPKDAERKGAAADAAEAGTDPR
VPEERKASFERARRAGVARRIEEGGGVPRDSGRGSGSGSEADSGGEGDEG
GVPDESPFPWKEAEKPPFTWQDPDAPVVPKPFLAGSGADGEKGGAAAGAE
AKSTGGGGK
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mRNA from alignment at Ecto-sp9_F_contig10787:2088..3529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10787.684.1 ID=mRNA_Ecto-sp9_F_contig10787.684.1|Name=mRNA_Ecto-sp9_F_contig10787.684.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1442bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10787:2088..3529+ (Ectocarpus species9 EcSCA_722f female)
CTCGTGAAGAGGTGATGTTCTCCTCCAGCGTCATCCGACGGGGACGCTGC
TCCCTGGCCAGGCCACCCGCTGCAACGCGTTGCAATGCGATAGTAGTAGA
CCGAGGTCAACCACAGACCAGCAGGAAAGGTCAACAACATGCGGCGATCC
GTCGGTGTCTCGCAGGTGCAGCGGCAACAGTACCACCAGCTAGAGGCGGA
GGGGTAGCGTCTGGAGAAGCAGCAGCGGGAAAGGTGCAGGGAAGCATCGC
TAGTTGCTCCGGGACGAAGCACAATCCAATACTTGGGCTGGGGAACGAGC
ATCAATCATTTCTGTCGGAGACCACCGGCGGAACTGTCAACTGGCGACGG
CACGCATCGACACTGAGTTGGGGCGACAAGTGCTGTCTCTCGCTGCGACC
AGGGGCCGCTTCGTCTGCGTTGCGCAGCCGAGCCTTGCAGGCTGGTGGGC
CTGCTCTCCGGCTAGATAGGCGTGGTTTCTCAGCTGGACAAGGGCCCGAC
AGCGATCACGATGGCGATGACGAATATGACTACAGCAGCGGCGACAGCGG
CAGCGACAGTGAGTGCGAGTCTGAGAGTACGCTTTTCGGGGCTAGCAGCG
GGGCAGAAACGGCGGCGAAGACCGAGGAGGCAGGGGCACCGGCAGCGGTG
AAAAAACCACCGGCGAAGAAGAACACGAAGCCCAGAATACCGCGCAACAG
ACGCGGTGGGAAAGGCGAGAGGAACCCCTCTCCGACAGAAGCCGCTCAAG
CTGTAGCAGTAGCGGATGGGGAAGCAGGAACACCGGCACCATCACCCGAG
GCCTCAGAAGCACCGCCAAAGAAGGCCCCAAAGGCCAAAACCCCGCGCAA
AAGACGTGGCAACCAAGGCAAGAGGAACCACTCTCCGACAGCAGCCGCTC
AAGCGGCAGAAGCAGCGGACGGGGAAGAAGCAGGAACGACAGCAACCGAG
GCCGCAGCAGACCCACCGGCAGCAAACAAGGCCCCGAAGGCCAAAGCCCC
GCGCAAGCGACGTGGCGGCCAAGGCGAAAGCTCCCGCTCTCCAAACGCTG
GACCCAAAGATGCGGAGAGAAAAGGTGCCGCAGCAGATGCGGCGGAGGCA
GGAACGGACCCGAGAGTCCCCGAGGAGAGGAAGGCGTCGTTCGAGCGCGC
GCGACGTGCGGGCGTAGCCCGAAGAATCGAAGAGGGAGGGGGCGTTCCGC
GGGATAGCGGTAGAGGTAGCGGTAGCGGCAGCGAGGCCGACTCGGGCGGC
GAGGGAGACGAGGGCGGCGTCCCCGACGAGTCGCCCTTCCCGTGGAAGGA
GGCAGAAAAGCCTCCTTTCACCTGGCAGGACCCGGATGCCCCCGTCGTTC
CCAAGCCTTTCCTGGCGGGAAGCGGCGCTGACGGCGAGAAGGGCGGGGCG
GCGGCGGGCGCGGAAGCGAAGAGCACCGGCGGCGGGGGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10787:2088..3529+

>mRNA_Ecto-sp9_F_contig10787.684.1 ID=mRNA_Ecto-sp9_F_contig10787.684.1|Name=mRNA_Ecto-sp9_F_contig10787.684.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2754bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10787:2088..3529+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCTCCTCCAGCGTCATCCGACGGGGACGCTGCTCCCTGGCCAGGCC
ACCCGCTGCAACGCGTTGCAATGCGATAGTAGTAGACCGAGGTCAACCAC
AGACCAGCAGGAAAGGTCAACAACATGCGGCGATCCGTCGGTGTCTCGCA
GGTGCAGCGGCAACAGTACCACCAGCTAGAGGCGGAGGGGTAGCGTCTGG
AGAAGCAGCAGCGGGAAAGGTGCAGGGAAGCATCGCTAGTTGCTCCGGGA
CGAAGCACAATCCAATACTTGGGCTGGGGAACGAGCATCAATCATTTCTG
TCGGAGACCACCGGCGGAACTGTCAACTGGCGACGGCACGCATCGACACT
GAGTTGGGGCGACAAGTGCTGTCTCTCGCTGCGACCAGGGGCCGCTTCGT
CTGCGTTGCGCAGCCGAGCCTTGCAGGCTGGTGGGCCTGCTCTCCGGCTA
GATAGGCGTGGTTTCTCAGCTGGACAAGGGCCCGACAGCGATCACGATGG
CGATGACGAATATGACTACAGCAGCGGCGACAGCGGCAGCGACAGTGAGT
GCGAGTCTGAGAGTACGCTTTTCGGGGCTAGCAGCGGGGCAGAAACGGCG
GCGAAGACCGAGGAGATGTTCTCCTCCAGCGTCATCCGACGGGGACGCTG
CTCCCTGGCCAGGCCACCCGCTGCAACGCGTTGCAATGCGATAGTAGTAG
ACCGAGGTCAACCACAGACCAGCAGGAAAGGTCAACAACATGCGGCGATC
CGTCGGTGTCTCGCAGGTGCAGCGGCAACAGTACCACCAGCTAGAGGCGG
AGGGGTAGCGTCTGGAGAAGCAGCAGCGGGAAAGGTGCAGGGAAGCATCG
CTAGTTGCTCCGGGACGAAGCACAATCCAATACTTGGGCTGGGGAACGAG
CATCAATCATTTCTGTCGGAGACCACCGGCGGAACTGTCAACTGGCGACG
GCACGCATCGACACTGAGTTGGGGCGACAAGTGCTGTCTCTCGCTGCGAC
CAGGGGCCGCTTCGTCTGCGTTGCGCAGCCGAGCCTTGCAGGCTGGTGGG
CCTGCTCTCCGGCTAGATAGGCGTGGTTTCTCAGCTGGACAAGGGCCCGA
CAGCGATCACGATGGCGATGACGAATATGACTACAGCAGCGGCGACAGCG
GCAGCGACAGTGAGTGCGAGTCTGAGAGTACGCTTTTCGGGGCTAGCAGC
GGGGCAGAAACGGCGGCGAAGACCGAGGAGCCCAGAATACCGCGCAACAG
ACGCGGTGGGAAAGGCGAGAGGAACCCCTCTCCGACAGAAGCCGCTCAAG
CTGTAGCAGTAGCGGATGGGGAAGCAGGAACACCGGCACCATCACCCGAG
GCCTCAGAAGCACCGCCAAAGAAGGCCCCAAAGGCCAAAACCCCGCGCAA
AAGACGTGGCAACCAAGGCAAGAGGAACCACTCTCCGACAGCAGCCGCTC
AAGCGGCAGAAGCAGCGGACGGGGAAGAAGCAGGAACGACAGCAACCGAG
GCCGCAGCAGACCCACCGGCAGCAAACAAGGCCCCGAAGGCCAAAGCCCC
GCGCAAGCGACGTGGCGGCCAAGGCGAAAGCTCCCGCTCTCCAAACGCTG
GACCCAAAGATGCGGAGAGAAAAGGTGCCGCAGCAGATGCGGCGGAGGCA
GGAACGGACCCGAGAGTCCCCGAGGAGAGGAAGGCGTCGTTCGAGCGCGC
GCGACGTGCGGGCGTAGCCCGAAGAATCGAAGAGGGAGGGGGCGTTCCGC
GGGATAGCGGTAGAGGTAGCGGTAGCGGCAGCGAGGCCGACTCGGGCGGC
GAGGGAGACGAGGGCGGCGTCCCCGACGAGTCGCCCTTCCCGTGGAAGGA
GGCAGAAAAGCCTCCTTTCACCTGGCAGGACCCGGATGCCCCCGTCGTTC
CCAAGCCTTTCCTGGCGGGAAGCGGCGCTGACGGCGAGAAGGGCGGGGCG
GCGGCGGGCGCGGAAGCGAAGAGCACCGGCGGCGGGGGCAAGCCCAGAAT
ACCGCGCAACAGACGCGGTGGGAAAGGCGAGAGGAACCCCTCTCCGACAG
AAGCCGCTCAAGCTGTAGCAGTAGCGGATGGGGAAGCAGGAACACCGGCA
CCATCACCCGAGGCCTCAGAAGCACCGCCAAAGAAGGCCCCAAAGGCCAA
AACCCCGCGCAAAAGACGTGGCAACCAAGGCAAGAGGAACCACTCTCCGA
CAGCAGCCGCTCAAGCGGCAGAAGCAGCGGACGGGGAAGAAGCAGGAACG
ACAGCAACCGAGGCCGCAGCAGACCCACCGGCAGCAAACAAGGCCCCGAA
GGCCAAAGCCCCGCGCAAGCGACGTGGCGGCCAAGGCGAAAGCTCCCGCT
CTCCAAACGCTGGACCCAAAGATGCGGAGAGAAAAGGTGCCGCAGCAGAT
GCGGCGGAGGCAGGAACGGACCCGAGAGTCCCCGAGGAGAGGAAGGCGTC
GTTCGAGCGCGCGCGACGTGCGGGCGTAGCCCGAAGAATCGAAGAGGGAG
GGGGCGTTCCGCGGGATAGCGGTAGAGGTAGCGGTAGCGGCAGCGAGGCC
GACTCGGGCGGCGAGGGAGACGAGGGCGGCGTCCCCGACGAGTCGCCCTT
CCCGTGGAAGGAGGCAGAAAAGCCTCCTTTCACCTGGCAGGACCCGGATG
CCCCCGTCGTTCCCAAGCCTTTCCTGGCGGGAAGCGGCGCTGACGGCGAG
AAGGGCGGGGCGGCGGCGGGCGCGGAAGCGAAGAGCACCGGCGGCGGGGG
CAAG
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