mRNA_Ecto-sp9_F_contig1078.683.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1078.683.1
Unique NamemRNA_Ecto-sp9_F_contig1078.683.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1078.683.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1078contigEcto-sp9_F_contig1078:21270..21614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928297.9432354-CDS-Ecto-sp9_F_contig1078:21269..216141622928297.9432354-CDS-Ecto-sp9_F_contig1078:21269..21614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1078 21270..21614 +
1692277826.2003171-CDS-Ecto-sp9_F_contig1078:21269..216141692277826.2003171-CDS-Ecto-sp9_F_contig1078:21269..21614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1078 21270..21614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1078.683.1prot_Ecto-sp9_F_contig1078.683.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1078 21270..21614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1078.683.1

>prot_Ecto-sp9_F_contig1078.683.1 ID=prot_Ecto-sp9_F_contig1078.683.1|Name=mRNA_Ecto-sp9_F_contig1078.683.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
GRRSAVGPPSTGPCPPAAQPPPNRRKTQARTPRDVEYASHLHSTVVDIEM
GVITSRVEQKTVILRQTVTTHRVQTACRSPKHGNGGTSRIAYGVKRLLLF
SILVWVRDPIWVCC*
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mRNA from alignment at Ecto-sp9_F_contig1078:21270..21614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1078.683.1 ID=mRNA_Ecto-sp9_F_contig1078.683.1|Name=mRNA_Ecto-sp9_F_contig1078.683.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=345bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1078:21270..21614+ (Ectocarpus species9 EcSCA_722f female)
GGACGTCGTTCGGCAGTCGGACCACCTTCCACAGGCCCTTGTCCACCTGC
AGCACAACCCCCACCAAACCGGAGAAAGACGCAGGCACGCACGCCAAGAG
ACGTAGAATACGCGTCGCATCTTCACTCAACAGTAGTTGACATCGAAATG
GGTGTCATCACCTCCCGGGTCGAACAAAAAACCGTGATTCTCAGACAGAC
AGTAACAACACACAGAGTCCAGACTGCCTGCAGGTCTCCAAAGCATGGGA
ACGGGGGCACATCACGCATCGCGTACGGAGTGAAACGGCTGCTTCTATTT
AGTATTCTTGTTTGGGTACGAGATCCGATCTGGGTATGTTGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1078:21270..21614+

>mRNA_Ecto-sp9_F_contig1078.683.1 ID=mRNA_Ecto-sp9_F_contig1078.683.1|Name=mRNA_Ecto-sp9_F_contig1078.683.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1078:21270..21614+ (Ectocarpus species9 EcSCA_722f female)
GGACGTCGTTCGGCAGTCGGACCACCTTCCACAGGCCCTTGTCCACCTGC
AGCACAACCCCCACCAAACCGGAGAAAGACGCAGGCACGCACGCCAAGAG
ACGTAGAATACGCGTCGCATCTTCACTCAACAGTAGTTGACATCGAAATG
GGTGTCATCACCTCCCGGGTCGAACAAAAAACCGTGATTCTCAGACAGAC
AGTAACAACACACAGAGTCCAGACTGCCTGCAGGTCTCCAAAGCATGGGA
ACGGGGGCACATCACGCATCGCGTACGGAGTGAAACGGCTGCTTCTATTT
AGTATTCTTGTTTGGGTACGAGATCCGATCTGGGTATGTTGTTAGGGACG
TCGTTCGGCAGTCGGACCACCTTCCACAGGCCCTTGTCCACCTGCAGCAC
AACCCCCACCAAACCGGAGAAAGACGCAGGCACGCACGCCAAGAGACGTA
GAATACGCGTCGCATCTTCACTCAACAGTAGTTGACATCGAAATGGGTGT
CATCACCTCCCGGGTCGAACAAAAAACCGTGATTCTCAGACAGACAGTAA
CAACACACAGAGTCCAGACTGCCTGCAGGTCTCCAAAGCATGGGAACGGG
GGCACATCACGCATCGCGTACGGAGTGAAACGGCTGCTTCTATTTAGTAT
TCTTGTTTGGGTACGAGATCCGATCTGGGTATGTTGTTAG
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