mRNA_Ecto-sp9_F_contig10777.678.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10777.678.1
Unique NamemRNA_Ecto-sp9_F_contig10777.678.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10777.678.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 3 
Query:   90 MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP 218
            MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP
Sbjct:    1 MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP 43
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BLAST of mRNA_Ecto-sp9_F_contig10777.678.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 3 
Query:   90 MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP 218
            MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP
Sbjct:    1 MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10777.678.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.850e-21100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.800e-19100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10777contigEcto-sp9_F_contig10777:773..1711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size426
Cds size426
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928297.814914-CDS-Ecto-sp9_F_contig10777:772..8901622928297.814914-CDS-Ecto-sp9_F_contig10777:772..890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10777 773..890 -
1692277826.1568944-CDS-Ecto-sp9_F_contig10777:772..8901692277826.1568944-CDS-Ecto-sp9_F_contig10777:772..890Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10777 773..890 -
1622928297.8306048-CDS-Ecto-sp9_F_contig10777:1403..17111622928297.8306048-CDS-Ecto-sp9_F_contig10777:1403..1711Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10777 1404..1711 -
1692277826.1666725-CDS-Ecto-sp9_F_contig10777:1403..17111692277826.1666725-CDS-Ecto-sp9_F_contig10777:1403..1711Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10777 1404..1711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10777.678.1prot_Ecto-sp9_F_contig10777.678.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10777 773..1711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10777.678.1

>prot_Ecto-sp9_F_contig10777.678.1 ID=prot_Ecto-sp9_F_contig10777.678.1|Name=mRNA_Ecto-sp9_F_contig10777.678.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=142bp
MPHVVSLVPRFATHRHTHAAAAVDIDRHTLCPPTSTGVRRSPDGGSGKWR
SRTWMTRRSTWVPRTRTIARPRRRRPTTSASARRTRGGPRGAATVGIVMM
LPRAMVDGRSRSRAKGGLRAKTTPATTQTTTTTTTTTTAAV*
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mRNA from alignment at Ecto-sp9_F_contig10777:773..1711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10777.678.1 ID=mRNA_Ecto-sp9_F_contig10777.678.1|Name=mRNA_Ecto-sp9_F_contig10777.678.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=939bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10777:773..1711- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCACGTCGTTTCTCTCGTGCCCAGGTTCGCAACACACAGACACAC
ACACGCAGCAGCAGCAGTTGACATCGATCGACACACATTATGTCCGCCCA
CTTCGACGGGGGTGCGGAGATCGCCGGACGGCGGCTCCGGGAAGTGGAGG
TCTCGTACGTGGATGACCCGACGCTCGACATGGGTGCCGAGGACTCGGAC
GATTGCCCGGCCTCGCCGCCGCCGACCTACTACCTCCGCGTCCGCGAGGA
GAACAAGAGGAGGGCCACGGGGGGCGGCAACGGTGGGGATCGTGATGATG
CTGCCGAGGTGAAGTCAATTGCCTGCTCGCGGTTGTGTTGAGTCCTGCTG
CGTACGTATTCCGTACGAACAATTTCAAATACTATTCAGGCCGTTACACA
CCCCGCTCGCATGTTTCCTCACCGCTGGGTATCGACAGTAGTCTATGTAC
TGTAGTCTACACTGGAGTACCTCTCTTGGCACCTTCTTTCTGTGAGGAAG
GGTCTGCTTGTCTGCTCTCCAGCTCCTACTCCGGCGGGCATTGATTCCAG
CGCAGGTTACGTACTCCTGCTCACTCTGTTGTAGCCTGATTCAGGTTCGT
TTGTCGGCCGACATCTATCTGCCAATCTTTGGGTCGCGTATACGACAGCA
GCACTCAGCAGGAAACTCCCCTCCGGACCGAGATGGTTTCGGAGCGAATG
GCAACATTTCAGGCATTTAGAAGAAGTCTCCCGCTACCTGCGTAGAAGTG
GAGTATCCACAATGCATCTTTTTTGTTTCTGGTTATACACAGCTGTTGTT
TCTTGGTCCACCTCACGACAGAGCAATGGTGGACGGGCGGAGCAGGAGCA
GGGCGAAGGGGGGGCTAAGAGCGAAGACGACGCCGGCAACAACGCAAACA
ACAACAACAACAACAACAACAACAACAGCAGCAGTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10777:773..1711-

>mRNA_Ecto-sp9_F_contig10777.678.1 ID=mRNA_Ecto-sp9_F_contig10777.678.1|Name=mRNA_Ecto-sp9_F_contig10777.678.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10777:773..1711- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCACGTCGTTTCTCTCGTGCCCAGGTTCGCAACACACAGACACAC
ACACGCAGCAGCAGCAGTTGACATCGATCGACACACATTATGTCCGCCCA
CTTCGACGGGGGTGCGGAGATCGCCGGACGGCGGCTCCGGGAAGTGGAGG
TCTCGTACGTGGATGACCCGACGCTCGACATGGGTGCCGAGGACTCGGAC
GATTGCCCGGCCTCGCCGCCGCCGACCTACTACCTCCGCGTCCGCGAGGA
GAACAAGAGGAGGGCCACGGGGGGCGGCAACGGTGGGGATCGTGATGATG
CTGCCGAGATGCCGCACGTCGTTTCTCTCGTGCCCAGGTTCGCAACACAC
AGACACACACACGCAGCAGCAGCAGTTGACATCGATCGACACACATTATG
TCCGCCCACTTCGACGGGGGTGCGGAGATCGCCGGACGGCGGCTCCGGGA
AGTGGAGGTCTCGTACGTGGATGACCCGACGCTCGACATGGGTGCCGAGG
ACTCGGACGATTGCCCGGCCTCGCCGCCGCCGACCTACTACCTCCGCGTC
CGCGAGGAGAACAAGAGGAGGGCCACGGGGGGCGGCAACGGTGGGGATCG
TGATGATGCTGCCGAGAGCAATGGTGGACGGGCGGAGCAGGAGCAGGGCG
AAGGGGGGGCTAAGAGCGAAGACGACGCCGGCAACAACGCAAACAACAAC
AACAACAACAACAACAACAACAGCAGCAGTTTAGAGCAATGGTGGACGGG
CGGAGCAGGAGCAGGGCGAAGGGGGGGCTAAGAGCGAAGACGACGCCGGC
AACAACGCAAACAACAACAACAACAACAACAACAACAACAGCAGCAGTTT
AG
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