mRNA_Ecto-sp9_F_contig1077.669.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1077.669.1
Unique NamemRNA_Ecto-sp9_F_contig1077.669.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.669.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L180_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.960e-61
Identity = 110/132 (83.33%), Postives = 111/132 (84.09%), Query Frame = -2 
Query:   30 MDSPSPGLHLTKYFSPAHCLVRRRAKHATPTPPIFNPGRGVCRRHGLVAMLLVADRSRVVDAFGGVAVGVASALRAGSPPGSECTAAVGMAPPSSCSSSSRGGGQGRRMMVRPRPATLAPTTDAGEGRALSG 425
            MDSPSPGLHLTKYFSP  CLVRRRAKHATPTPPI NPGRGVCRRHGLVAMLLVADRSRVVDAFGGVAVGVASALRAGSPPGSECTA+                  GRRMMVRPRPATLAPTTDAGEGRALSG
Sbjct:    1 MDSPSPGLHLTKYFSPTQCLVRRRAKHATPTPPIVNPGRGVCRRHGLVAMLLVADRSRVVDAFGGVAVGVASALRAGSPPGSECTAS------------------GRRMMVRPRPATLAPTTDAGEGRALSG 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1077.669.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.960e-6183.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1077contigEcto-sp9_F_contig1077:1208..1759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size402
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928296.5063987-CDS-Ecto-sp9_F_contig1077:1207..16091622928296.5063987-CDS-Ecto-sp9_F_contig1077:1207..1609Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 1208..1609 +
1692277825.6899538-CDS-Ecto-sp9_F_contig1077:1207..16091692277825.6899538-CDS-Ecto-sp9_F_contig1077:1207..1609Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 1208..1609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928296.5210528-UTR-Ecto-sp9_F_contig1077:1609..17591622928296.5210528-UTR-Ecto-sp9_F_contig1077:1609..1759Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1077 1610..1759 +
1692277825.7013671-UTR-Ecto-sp9_F_contig1077:1609..17591692277825.7013671-UTR-Ecto-sp9_F_contig1077:1609..1759Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1077 1610..1759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1077.669.1prot_Ecto-sp9_F_contig1077.669.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1077 1208..1609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1077.669.1

>prot_Ecto-sp9_F_contig1077.669.1 ID=prot_Ecto-sp9_F_contig1077.669.1|Name=mRNA_Ecto-sp9_F_contig1077.669.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=134bp
MQYKNRRVAHPERARPSPASVVGAKVAGRGRTIILRPCPPPRLLLLQLDG
GAIPTAAVHSDPGGDPARSAEATPTATPPNASTTLDRSATSSIATSPCLR
HTPLPGLKMGGVGVACLALLRTRQCAGLKYLVR*
back to top

mRNA from alignment at Ecto-sp9_F_contig1077:1208..1759+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1077.669.1 ID=mRNA_Ecto-sp9_F_contig1077.669.1|Name=mRNA_Ecto-sp9_F_contig1077.669.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1077:1208..1759+ (Ectocarpus species9 EcSCA_722f female)
ATGCAATACAAGAACAGACGTGTTGCTCACCCTGAAAGAGCTCGGCCTTC
CCCGGCATCAGTCGTCGGCGCCAAGGTGGCCGGGCGTGGTCGAACCATCA
TCCTCCGACCCTGCCCCCCGCCCCGGCTGCTGCTGCTGCAGCTCGACGGA
GGCGCCATTCCTACCGCTGCTGTGCATTCCGACCCAGGTGGTGACCCAGC
TCGAAGCGCAGAGGCTACTCCTACCGCCACCCCTCCAAACGCATCCACCA
CTCTGGATCGGTCGGCCACTAGCAGCATCGCAACGAGCCCATGCCTTCGG
CACACGCCTCTTCCTGGGTTGAAGATGGGCGGTGTCGGTGTCGCATGCTT
GGCCCTTCTTCGGACCAGGCAGTGCGCTGGGCTGAAGTACTTGGTGAGAT
GAAGCCCAGGAGATGGAGAGTCCATGCGCGCGCTCACCTCACAATCCCGC
CCGTTGGGGAACGAGCTGCTTCCCGACCTCGTCGAGTAGTGCGTACGACC
ACGGCCTGCTATGTGTTGTTAGTTGGTCACGAGAGGCCCTTGCGAGGGAG
AG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1077:1208..1759+

>mRNA_Ecto-sp9_F_contig1077.669.1 ID=mRNA_Ecto-sp9_F_contig1077.669.1|Name=mRNA_Ecto-sp9_F_contig1077.669.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1077:1208..1759+ (Ectocarpus species9 EcSCA_722f female)
ATGCAATACAAGAACAGACGTGTTGCTCACCCTGAAAGAGCTCGGCCTTC
CCCGGCATCAGTCGTCGGCGCCAAGGTGGCCGGGCGTGGTCGAACCATCA
TCCTCCGACCCTGCCCCCCGCCCCGGCTGCTGCTGCTGCAGCTCGACGGA
GGCGCCATTCCTACCGCTGCTGTGCATTCCGACCCAGGTGGTGACCCAGC
TCGAAGCGCAGAGGCTACTCCTACCGCCACCCCTCCAAACGCATCCACCA
CTCTGGATCGGTCGGCCACTAGCAGCATCGCAACGAGCCCATGCCTTCGG
CACACGCCTCTTCCTGGGTTGAAGATGGGCGGTGTCGGTGTCGCATGCTT
GGCCCTTCTTCGGACCAGGCAGTGCGCTGGGCTGAAGTACTTGGTGAGAT
GAATGCAATACAAGAACAGACGTGTTGCTCACCCTGAAAGAGCTCGGCCT
TCCCCGGCATCAGTCGTCGGCGCCAAGGTGGCCGGGCGTGGTCGAACCAT
CATCCTCCGACCCTGCCCCCCGCCCCGGCTGCTGCTGCTGCAGCTCGACG
GAGGCGCCATTCCTACCGCTGCTGTGCATTCCGACCCAGGTGGTGACCCA
GCTCGAAGCGCAGAGGCTACTCCTACCGCCACCCCTCCAAACGCATCCAC
CACTCTGGATCGGTCGGCCACTAGCAGCATCGCAACGAGCCCATGCCTTC
GGCACACGCCTCTTCCTGGGTTGAAGATGGGCGGTGTCGGTGTCGCATGC
TTGGCCCTTCTTCGGACCAGGCAGTGCGCTGGGCTGAAGTACTTGGTGAG
ATGA
back to top