mRNA_Ecto-sp9_F_contig10769.668.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig10769.668.1
Unique Name	mRNA_Ecto-sp9_F_contig10769.668.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Putative (retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.870e-40
Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 1

Query:   25 QVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMY 279
            +VLLDAETERLSSEDHSRLLEQE LHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLP+ L+  ++
Sbjct:  647 EVLLDAETERLSSEDHSRLLEQETLHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPMNLKYHLF 731

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: RB_A (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.070e-39
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 1

Query:   25 QVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMY 279
            +VLL+AETERL SEDHSRLLEQE LHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLP+ L+  ++
Sbjct:  769 EVLLEAETERLRSEDHSRLLEQETLHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPMNLKYHLF 853

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Retinoblastoma-like (protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ52_NANGC)

HSP 1 Score: 74.3 bits (181), Expect = 6.460e-15
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1

Query:   31 LLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMYPLVVTLLLTLLW 315
            +LD ET+RL   DH  LL     H+ALLACCL+ + KA SL++L+   VL+  ++ A DL K LESF +  PGLP  L+  +  +   +L ++ W
Sbjct:    1 MLDRETDRLRRRDHGALLRHPTFHRALLACCLQVLAKALSLVTLSLGRVLQICELQAYDLFKALESFVKASPGLPSLLRLHLIEVEEQILESMAW 95

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ6_PYTOL)

HSP 1 Score: 73.6 bits (179), Expect = 1.080e-12
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 1

Query:   25 QVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMYPLVVTLLLTLLW 315
            + LL AE ERL + + S LL  E    +L AC LE VLKA SL++L+FP++L  + ++A D  KV+ESF +  P LP  L+R M  L   +L +L W
Sbjct:  625 EALLVAERERLHTTNFSSLLNNETFVSSLFACSLEVVLKAHSLITLSFPFLLDTLGVNAFDFGKVIESFVKHGPKLPSALKRHMRDLEQMILDSLAW 721

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSA8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.080e-12
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1

Query:   25 QVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMYPLVVTLLLTLLW 315
            + LL +E ERL + + S LL  E+   +L AC LE VLKA SL++L+FP++L  + ++A D  K++ESF +  P LP  L+R M  L  T+L +L W
Sbjct:  639 EALLLSERERLRTTNFSSLLHNESFVASLFACSLEVVLKAHSLITLSFPFLLDAIRVNAFDFGKIVESFVKHAPRLPNALKRHMRDLEQTILDSLAW 735

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Hypothetical (protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC22_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.860e-12
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1

Query:   31 LLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMYPLVVTLLLTLLW 315
            ++ +ET RL S+DHS +L  +  H++LLACC E +LK + +++ T+P +L  + + + D    +E F R  P LP  L+R M  L+  +LL   W
Sbjct:  531 MIQSETRRLRSKDHSAILRNDVFHRSLLACCCEVILKPACVIAFTYPDLLGYLGLTSFDFQTTIEPFVRAAPDLPSGLKRHMNDLLDVILLQDAW 625

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCJ4_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-11
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1

Query:   25 QVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMYPLVVTLLLTLLW 315
            + LL +E +RL + + S LL  E    +L AC LE VLKA SL++L+FP++L  + ++A D  K++ESF +  P LP  L+R M  L  T+L +L W
Sbjct:  721 EALLVSEKDRLRTTNFSSLLNNETFVSSLYACSLEVVLKAHSLITLSFPFLLDILGVNAFDFGKIIESFVKHVPKLPNVLKRHMRDLEQTILDSLGW 817

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8I2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.410e-11
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1

Query:   25 QVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMYPLVVTLLLTLLW 315
            + +L +E ERL S D S+LL  E    AL ACC E  LK+ SL++L++P++L  + ++A       ESF ++ P LPV L++ M  +   +L +L W
Sbjct:  653 EPMLRSERERLRSGDFSKLLNNEVFIAALFACCAEVTLKSHSLITLSYPFLLEHLHVNAFHFVTTSESFVKYAPKLPVALKKHMGDVKNRILDSLAW 749

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF97_PYTIN)

HSP 1 Score: 69.7 bits (169), Expect = 2.470e-11
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 1

Query:   25 QVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMYPLVVTLLLTLLW 315
            + LL  E +RL S + + LL  E    +L  C LE VLKA  L++L+FP++L  + ++A D  KV+ESF +  P LP  L+R M  L   +L +L W
Sbjct: 1051 EALLRTERDRLRSSNFTTLLRNETFISSLFTCSLEVVLKAHGLITLSFPFLLGTLGVNAFDFGKVIESFVKHVPKLPSTLKRHMRDLEQVILDSLAW 1147

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BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YEB9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.320e-11
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1

Query:   25 QVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASSLLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGM 276
            + LL +E ERL + D S+LL  E    AL ACC E VLKA SL+++++P++L  + ++A       ESF ++ P LP  L++ M
Sbjct:  601 EPLLLSERERLRNNDFSKLLNNEVFLAALFACCAEVVLKAHSLITISYPFLLEHLHVNAFHFVTTSESFVKYAPKLPSALKKHM 684

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10769.668.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Putative	1.870e-40	89.41	retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxI...	[more]
RB_A	3.070e-39	87.06	domain-containing protein n=2 Tax=Ectocarpus sp. C...	[more]
Retinoblastoma-like	6.460e-15	42.11	protein (Fragment) n=1 Tax=Nannochloropsis gaditan...	[more]
Uncharacterized	1.080e-12	44.33	protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep...	[more]
Uncharacterized	1.080e-12	43.30	protein n=1 Tax=Pythium brassicum TaxID=1485010 Re...	[more]
Hypothetical	6.860e-12	36.84	protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=1...	[more]
Uncharacterized	1.300e-11	42.27	protein n=1 Tax=Globisporangium ultimum (strain AT...	[more]
Uncharacterized	2.410e-11	38.14	protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID...	[more]
Uncharacterized	2.470e-11	40.21	protein n=1 Tax=Pythium insidiosum TaxID=114742 Re...	[more]
Uncharacterized	8.320e-11	40.48	protein n=1 Tax=Phytophthora palmivora var. palmiv...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10769	contig	Ecto-sp9_F_contig10769:153..1879 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	151.8
Seed ortholog evalue	2.2e-34
Seed eggNOG ortholog	2880.D7G8E5
Preferred name	RB1
KEGG ko	ko:K04681,ko:K06618
KEGG Pathway	ko01522,ko04110,ko04218,ko04350,ko04934,ko05161,ko05165,ko05166,ko05167,ko05169,ko05200,ko05203,ko05212,ko05214,ko05215,ko05218,ko05219,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map01522,map04110,map04218,map04350,map04934,map05161,map05165,map05166,map05167,map05169,map05200,map05203,map05212,map05214,map05215,map05218,map05219,map05220,map05222,map05223,map05224,map05225,map05226
KEGG Module	M00692
GOs	GO:0000003,GO:0000070,GO:0000075,GO:0000082,GO:0000083,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0000902,GO:0000904,GO:0000976,GO:0000987,GO:0001047,GO:0001067,GO:0001085,GO:0001102,GO:0001558,GO:0001708,GO:0001894,GO:0001932,GO:0001933,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003170,GO:0003176,GO:0003179,GO:0003180,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006275,GO:0006325,GO:0006338,GO:0006349,GO:0006355,GO:0006357,GO:0006469,GO:0006725,GO:0006807,GO:0006915,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007093,GO:0007127,GO:0007129,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007507,GO:0007517,GO:0007519,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008285,GO:0008356,GO:0008589,GO:0008608,GO:0009410,GO:0009553,GO:0009555,GO:0009566,GO:0009567,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010016,GO:0010026,GO:0010033,GO:0010052,GO:0010090,GO:0010103,GO:0010374,GO:0010377,GO:0010389,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010965,GO:0012501,GO:0014070,GO:0014706,GO:0015630,GO:0016043,GO:0016514,GO:0016604,GO:0016605,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019904,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022619,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030071,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030218,GO:0030518,GO:0030521,GO:0030522,GO:0031134,GO:0031156,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031331,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031625,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032102,GO:0032103,GO:0032268,GO:0032269,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032875,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0033613,GO:0033673,GO:0033993,GO:0034086,GO:0034088,GO:0034101,GO:0034349,GO:0034502,GO:0034613,GO:0034641,GO:0035189,GO:0035257,GO:0035258,GO:0035295,GO:0035556,GO:0035914,GO:0040008,GO:0040012,GO:0040017,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042551,GO:0042592,GO:0042692,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043353,GO:0043388,GO:0043393,GO:0043401,GO:0043433,GO:0043549,GO:0043550,GO:0043565,GO:0043900,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044798,GO:0044843,GO:0045132,GO:0045143,GO:0045165,GO:0045445,GO:0045595,GO:0045596,GO:0045597,GO:0045637,GO:0045639,GO:0045649,GO:0045651,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045859,GO:0045862,GO:0045879,GO:0045892,GO:0045893,GO:0045930,GO:0045931,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048229,GO:0048232,GO:0048285,GO:0048366,GO:0048367,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048565,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0050678,GO:0050680,GO:0050681,GO:0050727,GO:0050728,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051052,GO:0051090,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051321,GO:0051338,GO:0051348,GO:0051402,GO:0051427,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055046,GO:0055123,GO:0060249,GO:0060255,GO:0060341,GO:0060537,GO:0060538,GO:0060548,GO:0061061,GO:0061676,GO:0061982,GO:0062033,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070192,GO:0070603,GO:0070727,GO:0070887,GO:0070997,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071459,GO:0071466,GO:0071495,GO:0071514,GO:0071695,GO:0071704,GO:0071840,GO:0071922,GO:0071930,GO:0072359,GO:0080090,GO:0080134,GO:0090068,GO:0090230,GO:0090329,GO:0090558,GO:0090575,GO:0090626,GO:0090627,GO:0090698,GO:0097159,GO:0097284,GO:0097718,GO:0098813,GO:0099402,GO:0120036,GO:0140013,GO:0140014,GO:0140110,GO:1900120,GO:1900122,GO:1901360,GO:1901363,GO:1901800,GO:1901970,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902099,GO:1902101,GO:1902105,GO:1902107,GO:1902494,GO:1902679,GO:1902680,GO:1902749,GO:1902806,GO:1902807,GO:1902903,GO:1902905,GO:1903046,GO:1903047,GO:1903052,GO:1903053,GO:1903055,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1903706,GO:1903708,GO:1903827,GO:1903866,GO:1903943,GO:1903944,GO:1904019,GO:1904026,GO:1904028,GO:1904035,GO:1904036,GO:1904760,GO:1904761,GO:1904949,GO:1905314,GO:1905634,GO:1905818,GO:1905820,GO:1990837,GO:2000026,GO:2000036,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000653,GO:2000677,GO:2000679,GO:2001141,GO:2001252
EggNOG free text desc.	regulation of cell cycle
EggNOG OGs	KOG1010@1,KOG1010@2759
COG Functional cat.	A
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01009,ko03000
Hectar predicted targeting category	other localisation
Exons	3
Model size	378
Cds size	378
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10769.668.1	prot_Ecto-sp9_F_contig10769.668.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig10769 153..1879 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928296.4066231-CDS-Ecto-sp9_F_contig10769:152..271	1622928296.4066231-CDS-Ecto-sp9_F_contig10769:152..271	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10769 153..271 -
1692277825.656081-CDS-Ecto-sp9_F_contig10769:152..271	1692277825.656081-CDS-Ecto-sp9_F_contig10769:152..271	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10769 153..271 -
1622928296.4188123-CDS-Ecto-sp9_F_contig10769:882..1012	1622928296.4188123-CDS-Ecto-sp9_F_contig10769:882..1012	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10769 883..1012 -
1692277825.6733449-CDS-Ecto-sp9_F_contig10769:882..1012	1692277825.6733449-CDS-Ecto-sp9_F_contig10769:882..1012	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10769 883..1012 -
1622928296.4316123-CDS-Ecto-sp9_F_contig10769:1750..1879	1622928296.4316123-CDS-Ecto-sp9_F_contig10769:1750..1879	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10769 1751..1879 -
1692277825.6816578-CDS-Ecto-sp9_F_contig10769:1750..1879	1692277825.6816578-CDS-Ecto-sp9_F_contig10769:1750..1879	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10769 1751..1879 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig10769:153..1879-
coding sequence from alignment at Ecto-sp9_F_contig10769:153..1879-

protein sequence of mRNA_Ecto-sp9_F_contig10769.668.1

>prot_Ecto-sp9_F_contig10769.668.1 ID=prot_Ecto-sp9_F_contig10769.668.1|Name=mRNA_Ecto-sp9_F_contig10769.668.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=126bp
MNNPPPLSQVLLDAETERLSSEDHSRLLEQEALHKALLACCLEAVLKASS
LLSLTFPWVLRRMDIDALDLCKVLESFARFCPGLPVRLQRGMYPLVVTLL
LTLLWVRLPATYPRQTNMSSNVYTH*

mRNA from alignment at Ecto-sp9_F_contig10769:153..1879-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig10769.668.1 ID=mRNA_Ecto-sp9_F_contig10769.668.1|Name=mRNA_Ecto-sp9_F_contig10769.668.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1727bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10769:153..1879- (Ectocarpus species9 EcSCA_722f female)
ATGAATAACCCCCCCCCCCTATCCCAGGTGTTGCTGGACGCAGAGACGGA
GAGGTTGAGCTCCGAGGATCACAGCCGCCTCCTCGAGCAGGAAGCCTTGC
ACAAGGCTCTCCTCGCTTGCTGCCTCGAGGTGAAGTATCCAGCTTATCTG
TCTATCTGTGTGAGTTGTGCTTAACCGTTGTTTAGGTGCGGGTCATCGCA
GCACACACACTTTGGTACCGCGTGTCCTGAAGTTGATTGACCGTGAGGTT
GTTTGGCAATCAATGCCGAGAGGGGTGGTGGCGTTGGCAAGGTACAGCGT
TGTCTGGGAGAGTCTGTCTTCCTTTGCACTCGTCGTTCTGTTTTCGCGCC
CACTGTACCCTCTTGGTTGTGAACGAATCGAGCCTCGAAACCCAATCCTC
CATGTATGGCTCGCATTAGAGTGTGCTTTTGCTTCTGAGGCGCCATCTTG
TTCCGGCAGCACTGGTAACAGCAACTTCTTAAGCATAGGAGTGCGGTTTT
CTGCTTCCCGTGTGGCGACGGAACAAGGTTGGTTGCGGAAATGATGACAT
CAATTAGACACACGCGCCTGCCTCTTGCTGTCGCTGGGTCTTGGACGCGT
TTGTTGTTCCAGCCTGTCGTGCTTCGCGTGCGATCGCAACCACCAACGCC
AACCACGACGTCCACGCCACTACACAGCAGCGGCGTGGGGGGCGCAACAC
ACACGTTTCTATTTTTTTCGCTCTTTTTTTCCCGCGCCGACGAAGAAGAC
AGCAGTCGGGGCGTGACCGGAGTACATACTCTCAAGAAACAATTGGCCGT
TTCTCTGTAAGTACTTTTGTTTGCGTGACCCCTCCACCGGCCATACACCA
CAAACCACACCACACAGGCGGTGCTGAAGGCGAGCTCCCTGCTGAGCCTG
ACTTTCCCGTGGGTGCTCCGGAGGATGGATATCGACGCGCTCGACCTGTG
CAAGGTGCTCGAGAGCTTCGCGCGCTTCTGTCCGGGCCTCCCGGTGAGTT
GGGTGTTTGGATAGGCATCGACCGCGCTAACCGGCTGACCAATGGAAAGA
CGTCAATCTTGTAGAGGGATAACAAGAGCACGAACACTTTCTATTCAAAA
GTGTGTGTGTGTTTGAATAAGCATTACTGCGCGAACCGAACTGACGGAAA
ACTAGCATGAACCGACTACGAAAGGAACAACCGAGCCAGGTCGCGTAGTG
TGCTTTGAAGCGATTTGACGTTCTTTTTTTGGCTCTCCCGACAAGCACAC
AACGGGTGGCAGATGAACGTGCATGTAAGCACGCCTCGCCTTGCCGGGTG
TCGATTATGTTTTGCTTGCTAACCGCCTTCGACGCGCTTTTTTTTGTGCG
ATGGCGGCGCAACGACTGCTGCTGTTGCCGCCGCCGCCGCCGCCGCCGAC
GACGATGATGATGATGATGATGCAGATGAACCTCAAGTACCACCTGTTCG
AGGTACAGACGGAGATCGTGGAGAGACTGGCCCTTGAGGCCGGGGCGGGA
GTGTTCAGGCTCATCGAAGAGCACAAGGTACACCGCGTTAGTACCTTCTG
TCACAGCTGCATGGGGGTTGTACGTAGGTGTGGTGATGTTTGGTGGCGGG
AAGGGAAGGACTGCAACGAGGAATGTATCCTCTCGTTGTGACTCTCTTGC
TGACTTTGTTGTGGGTCCGCCTGCCCGCCACCTACCCAAGGCAAACAAAC
ATGTCGAGTAATGTTTACACCCATTGA

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10769:153..1879-

>mRNA_Ecto-sp9_F_contig10769.668.1 ID=mRNA_Ecto-sp9_F_contig10769.668.1|Name=mRNA_Ecto-sp9_F_contig10769.668.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10769:153..1879- (Ectocarpus species9 EcSCA_722f female)
ATGAATAACCCCCCCCCCCTATCCCAGGTGTTGCTGGACGCAGAGACGGA
GAGGTTGAGCTCCGAGGATCACAGCCGCCTCCTCGAGCAGGAAGCCTTGC
ACAAGGCTCTCCTCGCTTGCTGCCTCGAGATGAATAACCCCCCCCCCCTA
TCCCAGGTGTTGCTGGACGCAGAGACGGAGAGGTTGAGCTCCGAGGATCA
CAGCCGCCTCCTCGAGCAGGAAGCCTTGCACAAGGCTCTCCTCGCTTGCT
GCCTCGAGGCGGTGCTGAAGGCGAGCTCCCTGCTGAGCCTGACTTTCCCG
TGGGTGCTCCGGAGGATGGATATCGACGCGCTCGACCTGTGCAAGGTGCT
CGAGAGCTTCGCGCGCTTCTGTCCGGGCCTCCCGGTGAGCGGTGCTGAAG
GCGAGCTCCCTGCTGAGCCTGACTTTCCCGTGGGTGCTCCGGAGGATGGA
TATCGACGCGCTCGACCTGTGCAAGGTGCTCGAGAGCTTCGCGCGCTTCT
GTCCGGGCCTCCCGGTGAGACTGCAACGAGGAATGTATCCTCTCGTTGTG
ACTCTCTTGCTGACTTTGTTGTGGGTCCGCCTGCCCGCCACCTACCCAAG
GCAAACAAACATGTCGAGTAATGTTTACACCCATTGAGACTGCAACGAGG
AATGTATCCTCTCGTTGTGACTCTCTTGCTGACTTTGTTGTGGGTCCGCC
TGCCCGCCACCTACCCAAGGCAAACAAACATGTCGAGTAATGTTTACACC
CATTGA