mRNA_Ecto-sp9_F_contig10754.655.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10754.655.1
Unique NamemRNA_Ecto-sp9_F_contig10754.655.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10754.655.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 6.800e-71
Identity = 122/124 (98.39%), Postives = 124/124 (100.00%), Query Frame = 2 
Query:    2 SEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDRGGAARHVRGVASEDWTRQPISTGGAQGSEDGSQPGKIPPTIVSGGGSSGSSGFATSLNG 373
            SEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDRGGAARHVRG+ASEDWTRQPISTGGAQGSEDGSQPG+IPPTIVSGGGSSGSSGFATSLNG
Sbjct:  613 SEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDRGGAARHVRGMASEDWTRQPISTGGAQGSEDGSQPGRIPPTIVSGGGSSGSSGFATSLNG 736
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BLAST of mRNA_Ecto-sp9_F_contig10754.655.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.480e-50
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 2 
Query:    2 SEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDRGGAARHVRGVASEDWTRQPISTGGAQG 277
            SEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPR AFASAAN+RASTGSVGDRGGAARHVRG+ASEDWTRQPISTGGAQG
Sbjct:  787 SEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRAAFASAANNRASTGSVGDRGGAARHVRGMASEDWTRQPISTGGAQG 878
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10754.655.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.800e-7198.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.480e-5096.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10754contigEcto-sp9_F_contig10754:1748..2659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size374
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10754.655.1prot_Ecto-sp9_F_contig10754.655.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10754 1748..2649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928294.9471068-CDS-Ecto-sp9_F_contig10754:1747..18451622928294.9471068-CDS-Ecto-sp9_F_contig10754:1747..1845Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 1748..1845 -
1692277825.1425114-CDS-Ecto-sp9_F_contig10754:1747..18451692277825.1425114-CDS-Ecto-sp9_F_contig10754:1747..1845Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 1748..1845 -
1622928294.97337-CDS-Ecto-sp9_F_contig10754:2085..22521622928294.97337-CDS-Ecto-sp9_F_contig10754:2085..2252Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 2086..2252 -
1692277825.1595266-CDS-Ecto-sp9_F_contig10754:2085..22521692277825.1595266-CDS-Ecto-sp9_F_contig10754:2085..2252Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 2086..2252 -
1622928294.9872382-CDS-Ecto-sp9_F_contig10754:2551..26491622928294.9872382-CDS-Ecto-sp9_F_contig10754:2551..2649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 2552..2649 -
1692277825.1729822-CDS-Ecto-sp9_F_contig10754:2551..26491692277825.1729822-CDS-Ecto-sp9_F_contig10754:2551..2649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10754 2552..2649 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928294.9991472-UTR-Ecto-sp9_F_contig10754:2649..26591622928294.9991472-UTR-Ecto-sp9_F_contig10754:2649..2659Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10754 2650..2659 -
1692277825.1811168-UTR-Ecto-sp9_F_contig10754:2649..26591692277825.1811168-UTR-Ecto-sp9_F_contig10754:2649..2659Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10754 2650..2659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10754.655.1

>prot_Ecto-sp9_F_contig10754.655.1 ID=prot_Ecto-sp9_F_contig10754.655.1|Name=mRNA_Ecto-sp9_F_contig10754.655.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=121bp
MGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAA
NDRASTGSVGDRGGAARHVRGVASEDWTRQPISTGGAQGSEDGSQPGKIP
PTIVSGGGSSGSSGFATSLNG
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mRNA from alignment at Ecto-sp9_F_contig10754:1748..2659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10754.655.1 ID=mRNA_Ecto-sp9_F_contig10754.655.1|Name=mRNA_Ecto-sp9_F_contig10754.655.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=912bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10754:1748..2659- (Ectocarpus species9 EcSCA_722f female)
GAGCGAGGAAATGGGGCGCTGCGTTTTGAGGGCGTGGTGCCAGTGTGCCG
GATATGGGGGGCGGGCGCGCGAATCGGTGCTTCAGTCGGTGTACCGCATC
CTCGATAGGTGAGCCGAAATCAGGGCGCGTTCACACCCTCATCTCATGTG
TGTGTATAGCGTGGCCTGCTTCCCCACCTTCCGCGATGGTTGACGCATTT
GTGGCCTCGGTGATATAATGCCACGCATGTGCTGCGCGATCCGATGCCTA
ACAATGTTCAACATCGCAGAGAGGAACAAAACAGCAACGAAGACACCTGT
GGCTAGATGTTGCACGCGGGGCGCGGCGATTGGGTGAGAGCCGAACGGTA
ACAACACGTCGTCGTGTGCGTTTTCTCTCGGGCCATTTGTTGTCTTTATC
TTGGCAGGAGTATCGCCCTGCCGCCCGACAACCCGCGCACGGCGTTCGCG
TCTGCGGCGAACGATCGCGCCAGCACCGGCAGTGTTGGTGATAGAGGAGG
AGCGGCCCGTCACGTGAGGGGGGTGGCGAGTGAAGACTGGACCCGGCAGC
CGATCTCGACGGGAGGGGCACAGGGTAAGCAAACGAAAGTGGCGGTCTTG
CAAGCAGCATGGCAAATGGGGCTTCCCGTTACGCCTGCCCGAGTTATTTA
GTCTATCGTAGTAAGAATGGATTGTGTTTGTTGCCTTGGTTGACAGCTCT
GTGTGTGTGTCGATGACGGTGTGCCGGAGACGATTAAGTTCACCTGTACA
TCGCATCCGGTGGCGCTTAGTCTCTCGCACGCGCCCCGATGCTTCCTTAC
TTGGAATTCTTCAGGGTCGGAGGACGGCAGCCAGCCGGGCAAGATACCGC
CGACTATCGTAAGCGGGGGTGGAAGCAGCGGTAGCAGCGGGTTTGCTACT
AGCTTGAACGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10754:1748..2659-

>mRNA_Ecto-sp9_F_contig10754.655.1 ID=mRNA_Ecto-sp9_F_contig10754.655.1|Name=mRNA_Ecto-sp9_F_contig10754.655.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10754:1748..2659- (Ectocarpus species9 EcSCA_722f female)
ATGGGGCGCTGCGTTTTGAGGGCGTGGTGCCAGTGTGCCGGATATGGGGG
GCGGGCGCGCGAATCGGTGCTTCAGTCGGTGTACCGCATCCTCGATAGAT
GGGGCGCTGCGTTTTGAGGGCGTGGTGCCAGTGTGCCGGATATGGGGGGC
GGGCGCGCGAATCGGTGCTTCAGTCGGTGTACCGCATCCTCGATAGGAGT
ATCGCCCTGCCGCCCGACAACCCGCGCACGGCGTTCGCGTCTGCGGCGAA
CGATCGCGCCAGCACCGGCAGTGTTGGTGATAGAGGAGGAGCGGCCCGTC
ACGTGAGGGGGGTGGCGAGTGAAGACTGGACCCGGCAGCCGATCTCGACG
GGAGGGGCACAGGGAGTATCGCCCTGCCGCCCGACAACCCGCGCACGGCG
TTCGCGTCTGCGGCGAACGATCGCGCCAGCACCGGCAGTGTTGGTGATAG
AGGAGGAGCGGCCCGTCACGTGAGGGGGGTGGCGAGTGAAGACTGGACCC
GGCAGCCGATCTCGACGGGAGGGGCACAGGGGTCGGAGGACGGCAGCCAG
CCGGGCAAGATACCGCCGACTATCGTAAGCGGGGGTGGAAGCAGCGGTAG
CAGCGGGTTTGCTACTAGCTTGAACGGCGGTCGGAGGACGGCAGCCAGCC
GGGCAAGATACCGCCGACTATCGTAAGCGGGGGTGGAAGCAGCGGTAGCA
GCGGGTTTGCTACTAGCTTGAACGGC
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