mRNA_Ecto-sp9_F_contig10746.649.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10746.649.1
Unique NamemRNA_Ecto-sp9_F_contig10746.649.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: Replication (factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 6.020e-137
Identity = 238/259 (91.89%), Postives = 238/259 (91.89%), Query Frame = 1 
Query: 1021 FRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            FRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKT IIDEDGLFKMLRDSNPKGQQP G           APASKPAVANPYQPKKAVVNPYASMQAAAKK       GAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAV QNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT
Sbjct:  229 FRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSNPKGQQPPGXXXXXXXXXXXAPASKPAVANPYQPKKAVVNPYASMQAAAKKKAAVNPFGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVRQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 487
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: Replication (factor C subunit 1 n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D450_CHLRE)

HSP 1 Score: 141 bits (356), Expect = 1.770e-31
Identity = 103/251 (41.04%), Postives = 125/251 (49.80%), Query Frame = 1 
Query: 1045 ARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            A   PPN+G KE P G   CL GK FV+SGVLDSLGRE A D IK++GG+VTGAVS +T FLV+G     GR     SKY++A    T +IDEDGLF ++R S P            P+  AAAP   PA A                      XX     GA   AG     PAG +                  + AAA      Q+WVDKYKP +S+ ++G+   V  LK WL NWE  HL+G  APT
Sbjct:  371 ASAPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVGH--HTGR-----SKYRKAREHGTKVIDEDGLFSLIRASEPF----------IPAENAAAP---PASAPXXXXXXXXXXXXXXXXXXXXXXXAAQRPGAGAAAGPSSARPAGVT-----------------RQPAAAGDAGQYQLWVDKYKPRNSAELVGNNTLVDNLKSWLMNWEQVHLRGGAAPT 584
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5C5_CHLIN)

HSP 1 Score: 135 bits (340), Expect = 1.800e-29
Identity = 108/251 (43.03%), Postives = 133/251 (52.99%), Query Frame = 1 
Query: 1045 ARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            A + PPN+G KE P G   CL GK FV+SGVLDSLGRE A D IK++GG+ T AVS +T FL+ G     GR     SKY++A    T +IDEDGLF ++R S P            P  AAAA    PA      P  A              XXXXXXX AA  A G G  P+   PAG +             + AAA  Q+  Q+WVDKYKP +S  ++G+   V  LK WL +WE  +L+GA APT
Sbjct:  372 ATVPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRTTQAVSGKTTFLLAGHHC--GR-----SKYRKAREHSTKVIDEDGLFALIRASEPF----------IPGGAAAAAPPAPAAXXXXAP--ASQXXXXXXXXXXXXXXXXXXXAAAQRAAGAG--PSSARPAGVAR------------QPAAAGDQSQYQLWVDKYKPRNSVELVGNNTLVANLKSWLMSWEQVNLRGAAAPT 589
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UHI8_VOLCA)

HSP 1 Score: 131 bits (329), Expect = 3.630e-28
Identity = 95/249 (38.15%), Postives = 122/249 (49.00%), Query Frame = 1 
Query: 1057 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAAKKXXXXXXXG--AAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            PPN  KKEVP G   CL G+ FV++G+LDSL R  AEDLIK++GGKVT +VS +T F+V+G     G       KY+ A   KT +IDEDGLF +L+                 +SA+ APA +PA A              +  AA          G  AA  AG     P G  P+                  A        Q+WVDKYKP +SS ++G+   V  LK WL++WE  HL+GA APT
Sbjct:  203 PPNYRKKEVPRGHPDCLTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVGHNCGRG-------KYRDAKQHKTKLIDEDGLFALLK-----------------ASASFAPAERPAAA--------------AAAAAIPSSICTSNFGPTAAARAG-----PGGAGPSAVRKPTGPYTTPQPSQPPAXXXXXGLYQLWVDKYKPRNSSELVGNNTLVANLKQWLESWEQVHLRGAAAPT 408
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D1N3_9CHLO)

HSP 1 Score: 130 bits (326), Expect = 7.550e-28
Identity = 97/247 (39.27%), Postives = 127/247 (51.42%), Query Frame = 1 
Query: 1057 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            PPN  +KEVP G   CL G+ FV++GVLDSL R  AEDLIK++GGKVT  VS +T FL+ G   + GR     SKY+ A   KT +IDEDGLF +LR S P  Q       + P++A     S P  A P           AS+  +          G+ V A G G +   + P G                 A++V  +  Q+WVDKYKP +S  ++G+   V  LK WL+ WE  HL+GA  PT
Sbjct:  132 PPNYRRKEVPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLAGH--NCGR-----SKYRMAKQHKTKVIDEDGLFALLRASAPFAQP------EGPTTA-----STPGTAGP-----------ASIPTS-------NFFGSTVAAAGPGCSV--RKPEGPVAPYNAGVRSQLPITGASSVGGSLNQLWVDKYKPANSFELVGNNTLVANLKQWLECWEQVHLRGAAVPT 340
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: BRCT (domain-containing protein n=5 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GSG1_9CHLO)

HSP 1 Score: 130 bits (326), Expect = 9.770e-28
Identity = 97/247 (39.27%), Postives = 127/247 (51.42%), Query Frame = 1 
Query: 1057 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            PPN  +KEVP G   CL G+ FV++GVLDSL R  AEDLIK++GGKVT  VS +T FL+ G   + GR     SKY+ A   KT +IDEDGLF +LR S P  Q       + P++A     S P  A P           AS+  +          G+ V A G G +   + P G                 A++V  +  Q+WVDKYKP +S  ++G+   V  LK WL+ WE  HL+GA  PT
Sbjct:  345 PPNYRRKEVPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLAGH--NCGR-----SKYRMAKQHKTKVIDEDGLFALLRASAPFAQP------EGPTTA-----STPGTAGP-----------ASIPTS-------NFFGSTVAAAGPGCSV--RKPEGPVAPYNAGVRSQLPITGASSVGGSLNQLWVDKYKPANSFELVGNNTLVANLKQWLECWEQVHLRGAAVPT 553
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBT5_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 1.770e-27
Identity = 104/250 (41.60%), Postives = 131/250 (52.40%), Query Frame = 1 
Query: 1051 LAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARA-AAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            + PPN+G KE P G   CL GK FV+SGVLDSLGR+ A D IK++GG+ T AVS +T FL++G     GR     SK+++A  + T +IDEDGL  ++R S P    P+G         AAAP   PA A P                    XXXXXX GA          P+   PAG              ARA AAA   +  Q+WVDKYKP +S  ++G+   V  L+ WL NWE  HL+GA APT
Sbjct:  365 VPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGRDEATDYIKRHGGRTTQAVSGKTTFLLVGHHC--GR-----SKFRKARELGTKVIDEDGLIALIRASEPN--IPAG---------AAAP---PATAAPASQXXXXXXXXXXXXXXXXXXXXXXXAGA---------GPSSARPAGV-------------ARAPAAAGDASQYQLWVDKYKPRNSVELVGNNTLVDNLRAWLLNWEQVHLRGAAAPT 571
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ARP4_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 7.130e-27
Identity = 98/247 (39.68%), Postives = 124/247 (50.20%), Query Frame = 1 
Query: 1057 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            PPN  KKE P G   CL G+ FV++GVLDSL R  AEDLIK++GGKVT  VS +T FL++G   + GR     SKY+ A   KT ++DEDGLF +LR S P    P       P+   AAP S PA            N + S  AAA              AG  G+ P    P   +           GA +      N  Q+WVDKYKP +S  ++G+   V  LK W++ WE  H +GA APT
Sbjct:  316 PPNYRKKEAPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLVGH--NCGR-----SKYRMAKHHKTKVLDEDGLFALLRASAPFA--PPERPMATPTPGTAAPTSIPAS-----------NFFGSTAAAAG-------------AGTGGRKPG--DPVALNDAGVRSQPPITGASSGGGGSLN--QLWVDKYKPANSFELVGNNTLVANLKQWIECWEQVHQRGAAAPT 525
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GSV0_GONPE)

HSP 1 Score: 123 bits (309), Expect = 1.290e-25
Identity = 110/263 (41.83%), Postives = 135/263 (51.33%), Query Frame = 1 
Query: 1057 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNP---KGQQPSGGGSQDPSSAAAAPASKPAVANPY-QPKKAVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAGKSPAGT--SXXXXXXXXXXXGARAAAAVCQNPG----------QMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1797
            PPN G K+VP G   CL G+ FV+SGVLDSL R  A+ LI+++GGKVT +VS RT FL++G   + GR     SKY+ A    T IIDEDGLF ++R S P   K Q P           AAAPAS         QP         S QAA++                    PA  S  G   S  XXXXXXX  G+RAA       G          Q+WVDKYKP +S  ++G+   V  LK WL++WEG HL+GA  PT
Sbjct:  360 PPNYGNKDVPRGHPDCLTGRTFVMSGVLDSLMRSDADALIRRHGGKVTQSVSGRTAFLLVGH--NCGR-----SKYRGAKQHGTKIIDEDGLFALIRASEPFAPKDQPPP----------AAAPASXXXXXXQXSQP---------SSQAASRA------------------GPAAISATGFFGSGAXXXXXXXPSGSRAAPPPASLGGAAGGSGGQLNQLWVDKYKPKNSVELVGNNTLVANLKQWLESWEGVHLRGAAPPT 578
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Match: replication (factor C subunit 1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB89210)

HSP 1 Score: 115 bits (289), Expect = 3.380e-23
Identity = 90/255 (35.29%), Postives = 115/255 (45.10%), Query Frame = 1 
Query: 1042 GARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKK-----AVVNPYASMQAAAKKXXXXXXXGAAVIAGGKGKAPAG--KSPAGTSXXXXXXXXXXXGARAAAAVCQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGA 1785
            G R  PP++G+KEVP G   CLAG  FV+SG LDSL RE AEDLIK+YGG+VTG++S +T++L+     D G     G K  +A  + T  + EDGLF M+R SN                       +  VA     KK     A   P AS Q A  K       G A    G G +PA   K   G+S                          W +KYKP   + +IG+   VK+L  WL +W    L GA
Sbjct:  227 GERKDPPHKGEKEVPEGSSDCLAGLTFVISGTLDSLEREEAEDLIKRYGGRVTGSISKKTNYLLCDE--DIG-----GRKSAKAKELGTRFLTEDGLFDMIRASN-----------------------RSKVATKEDNKKQVDKIAATQPKASPQKAVNKTYEPPVKGKATTHAGPGVSPAKRKKQIVGSSLP------------------------WTEKYKPKVPNDIIGNQSLVKQLHDWLTHWNDNFLNGA 427
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10746.649.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Replication6.020e-13791.89factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 R... [more]
Replication1.770e-3141.04factor C subunit 1 n=2 Tax=Chlamydomonas reinhardt... [more]
Replication1.800e-2943.03factor C subunit 1 n=1 Tax=Chlamydomonas incerta T... [more]
Replication3.630e-2838.15factor C subunit 1 n=1 Tax=Volvox carteri f. nagar... [more]
Replication7.550e-2839.27factor C subunit 1 n=1 Tax=Volvox reticuliferus Ta... [more]
BRCT9.770e-2839.27domain-containing protein n=5 Tax=Volvox reticulif... [more]
Replication1.770e-2741.60factor C subunit 1 n=1 Tax=Chlamydomonas schloesse... [more]
Replication7.130e-2739.68factor C subunit 1 n=1 Tax=Volvox africanus TaxID=... [more]
Replication1.290e-2541.83factor C subunit 1 n=1 Tax=Gonium pectorale TaxID=... [more]
replication3.380e-2335.29factor C subunit 1 n=1 Tax=Erigeron canadensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10746contigEcto-sp9_F_contig10746:148..4137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score437.2
Seed ortholog evalue1.2e-119
Seed eggNOG ortholog2880.D8LND0
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0022616,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901576
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size1797
Cds size1797
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10746.649.1prot_Ecto-sp9_F_contig10746.649.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10746 148..4137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928294.350605-CDS-Ecto-sp9_F_contig10746:147..3631622928294.350605-CDS-Ecto-sp9_F_contig10746:147..363Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 148..363 -
1692277824.8419394-CDS-Ecto-sp9_F_contig10746:147..3631692277824.8419394-CDS-Ecto-sp9_F_contig10746:147..363Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 148..363 -
1622928294.3821187-CDS-Ecto-sp9_F_contig10746:739..8921622928294.3821187-CDS-Ecto-sp9_F_contig10746:739..892Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 740..892 -
1692277824.855392-CDS-Ecto-sp9_F_contig10746:739..8921692277824.855392-CDS-Ecto-sp9_F_contig10746:739..892Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 740..892 -
1622928294.395714-CDS-Ecto-sp9_F_contig10746:1226..13771622928294.395714-CDS-Ecto-sp9_F_contig10746:1226..1377Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 1227..1377 -
1692277824.8647168-CDS-Ecto-sp9_F_contig10746:1226..13771692277824.8647168-CDS-Ecto-sp9_F_contig10746:1226..1377Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 1227..1377 -
1622928294.4103198-CDS-Ecto-sp9_F_contig10746:1895..19901622928294.4103198-CDS-Ecto-sp9_F_contig10746:1895..1990Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 1896..1990 -
1692277824.8728914-CDS-Ecto-sp9_F_contig10746:1895..19901692277824.8728914-CDS-Ecto-sp9_F_contig10746:1895..1990Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 1896..1990 -
1622928294.4252362-CDS-Ecto-sp9_F_contig10746:2398..33831622928294.4252362-CDS-Ecto-sp9_F_contig10746:2398..3383Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 2399..3383 -
1692277824.8812573-CDS-Ecto-sp9_F_contig10746:2398..33831692277824.8812573-CDS-Ecto-sp9_F_contig10746:2398..3383Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 2399..3383 -
1622928294.4392135-CDS-Ecto-sp9_F_contig10746:3940..41371622928294.4392135-CDS-Ecto-sp9_F_contig10746:3940..4137Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 3941..4137 -
1692277824.891624-CDS-Ecto-sp9_F_contig10746:3940..41371692277824.891624-CDS-Ecto-sp9_F_contig10746:3940..4137Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10746 3941..4137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10746.649.1

>prot_Ecto-sp9_F_contig10746.649.1 ID=prot_Ecto-sp9_F_contig10746.649.1|Name=mRNA_Ecto-sp9_F_contig10746.649.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=599bp
MDIRSFFGPSSGGAGGAAKPKPKPKTPASASKKGGGQAKSPSKKATASSS
GSSPKSSSKGGVGKMTLESTSKTKASSKKGQSASSQAAAAAAAEDSDDDV
VEVTPQPAKNKKDSTSSGSPAAASPGKKKAAGRGSITTTSGSSSSSSSRK
RAAKSAVNYKEDDDDDGEGGGGDDDDDDEAFSGSDAKDEESDKDDDDDDA
DDDVTSKSRKRKSGGSPAPKAAAPKVAAAAASPSKASVKKKKKRAVVEED
EEDDDVQEVTSSKHFSSATTKKKTAAPGGGGSSSSRKTTTSSKVDLGGTS
SDEDDAQEEEVAPTPPPKKKPAPASSSGSAKKTPGGGGGGFRPAWRGGAR
LAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVT
GAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRD
SNPKGQQPSGGGSQDPSSAAAAPASKPAVANPYQPKKAVVNPYASMQAAA
KKKAAVNPYGAAVIAGGKGKAPAGKSPAGTSSSSSSSSKAAGGARAAAAV
CQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT
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mRNA from alignment at Ecto-sp9_F_contig10746:148..4137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10746.649.1 ID=mRNA_Ecto-sp9_F_contig10746.649.1|Name=mRNA_Ecto-sp9_F_contig10746.649.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3990bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10746:148..4137- (Ectocarpus species9 EcSCA_722f female)
ATGGACATACGGTCCTTCTTCGGCCCTTCCTCGGGAGGGGCGGGCGGTGC
GGCCAAACCCAAGCCCAAGCCCAAGACACCGGCATCGGCGAGCAAGAAGG
GCGGTGGCCAGGCGAAGTCTCCGAGCAAGAAGGCCACCGCTAGCAGCAGC
GGCAGCAGCCCCAAGAGCAGCAGCAAGGGTGGTGTCGGCAAGATGACGTG
AGTCCTTACCGCACACAGCAGCACGTCGTCTTCTGTATATGGGTGCCATT
GGGTGTGTGCACGTTAATGGAAGGCGGCGGTTGGCGGCGACACAGCAGTT
CTTCAATTGTGGTGCAATCAAGCTTTTGCCGCTGCTTTGGGCGCGTGGTG
GATAGGGTTGGCGAGTGGCGGATCGATGCGAATTCGAGCTACCATGGCCC
ATGCCCACCGCCCTGTCGTATCTACCCCCGTCCCGCAGCAAATCTGCCAC
CTGAACAGCCATGCATTTGGCCTGTGACTCCTTGTTTGCAACGAGTGCCA
TCCTTTCTTATCTCGACTCCAAAACCACAACAATAGGCATCACACATGTT
TGAATTTTTCAAAATATCTGACAATCTTGAACGTGCGAGAGAGCGCGAAT
GTTTGTTTGATTGCGCCGACCTACAAATGGTGCTCAAGTTCTTGCTATAG
GTGCGAGCCCAATTTCCTCATCCTCACTGCCAAGTTGTTCGGTACGGGCG
CGAACTCTGTAGCTCAGCAGTAATTCTTATCCCTTCGGCGGCCGCACCCC
TCAGTTTGGAGAGCACCTCCAAGACCAAGGCTTCTTCGAAAAAGGGGCAG
AGCGCGTCCTCCCAAGCAGCAGCAGCAGCAGCAGCAGAAGACAGCGACGA
CGACGTGGTCGAAGTGACCCCGCAGCCCGCCAAAAATAAGAAGGATAGCA
CCTCGTCGGGTTCACCCGCAGCGGCGAGTCCGGGCAAGAAGAAAGCAGCA
GGAAGGGGCTCGATAACAACAACCAGTGGTAGTAGCAGCAGCAGCAGCAG
CAGGAAGAGAGCGGCGAAGTCGGCCGTGAACTACAAGGAAGACGATGATG
ATGACGGTGAGGGAGGGGGCGGGGACGATGATGACGACGACGAAGCCTTC
AGCGGTTCCGACGCGAAAGACGAGGAAAGCGACAAGGACGACGACGACGA
TGACGCCGACGATGACGTCACGTCTAAGTCCCGCAAGCGGAAGTCGGGGG
GCTCGCCGGCGCCCAAGGCGGCGGCGCCTAAGGTGGCGGCGGCGGCCGCG
TCGCCGAGCAAGGCCAGCGTGAAGAAGAAGAAGAAGAGGGCGGTTGTGGA
GGAGGATGAGGAGGATGACGACGTACAGGAAGTCACCAGCTCCAAGCATT
TCTCTTCGGCGACAACCAAGAAGAAGACGGCGGCACCGGGCGGCGGCGGC
AGCAGCAGCAGCAGGAAAACGACTACGTCGTCCAAGGTAGACCTTGGCGG
GACCTCGAGCGACGAAGACGACGCACAAGAAGAAGAGGTGGCGCCCACCC
CGCCGCCGAAAAAGAAGCCGGCGCCGGCTAGCAGCAGTGGCAGTGCGAAG
AAGACGCCCGGCGGCGGCGGCGGCGGCTTTCGGCCGGCGTGGCGGGGCGG
GGCGCGCCTCGCGCCTCCGAACGAGGGGAAGAAGGAAGTGCCCGTCGGGA
AGGAGCAATGCCTTGCGGGGAAGGCGTTCGTGGTGAGCGGGGTGCTCGAC
TCGCTCGGGAGGGAGGCGGCCGAGGACCTGATCAAGCAGGTACGCAAGCG
CGTACCAACCGTGCTCCATGTACACGTGGAATGTAAACAAGCCCCGTGTT
ATTTTTGTCGTTTTGTAGTGTTGGACAATTTTCTTTTCTTAGGTTTTCCT
CTCTGTGCAGGTGTGTTTTTTGCGGATTTCGTACAGGAATGGACACCCGT
AAGTCTGGGCCGAATATTTGGGGCCTTGGCCGCGGGGAAGGTGGAGAAAG
CGGACCTACTGACACCACTTTCCTCTGCCGACGAGCTCAAGCCCGTCGAT
CACCCCACCCCACAAGAGCCATTCCACGTCCAAAAGAACCCAACCGTAGG
TGTCTTATAATGTATTTTTTCTCCCTGATACCCACCTCCTTTCCCCGTCC
CCCGTGGCGGCCTGTCTCTCCCCCGCCCTTCTTGCCCCTCCGAACAGTAC
GGTGGCAAGGTGACCGGCGCCGTGAGCAGCAGGACCCACTTCCTGGTGCT
GGGTACGGTGCTGGATGACGGACGGCCGCCGGAAGAGGGCAGGTGCGCGG
CGCTACTGCTGTACCCTGGCGTTCTGAGGGCGCGCGATGGGTGTGGGATA
CCACCCACGAGCATCGCGGGCGGTGGGGGGTGGTGCGACGTGTTTCGTGG
TTGTATTTTAGATGACACGGGGGCGGAGGGGGGGTACTAATAGTCGTGCA
TGTCGTGGTCGTTGGACCGTTGACCTCGCATCCCTACAAAGCCGGGACGG
AGCACGCAGGGTTCTCGGACCAGGCTCTCACATCATCAAGCGCGAAGCGT
GAGGTATTGGGCGAGTCGCGGGGAGAGAGATTGCTGTTGCTGTTGGTAAA
CCGATGCGGCGATCTGCGCGACGACAGGACAGCAGCGATGGAACCTAGCG
TGCCATGCCTGTTTGTTGTTACCGCCCACTGTGGCGGTTTGGCAGTAAAC
CTCACGGCCGGATTTATTACAAGGCAAACTGCGTCACGATCGATCGATAT
GAATGTGACGCAACCTTTTGTGGCCCGTGTCCCGGCACCGGCTTTGTGAA
CTGCGCGCAGCAAGTACAAGAGGGCCATGGTGATGAAGACAACAATCATC
GACGAGGACGGCCTGTTCAAGATGCTCCGAGACTCCAACCCCAAGGGGCA
GCAGCCGTCGGGGGGTGGGAGCCAGGACCCTTCGTCGGCAGCAGCGGCTC
CGGCCAGCAAGGTGGGGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTCG
TAGCTGTTGGTTATGGTGCTGATGGTGCTGTTGTTGCTGCTGTGGTTGTT
GCTGTTGCTGTTGTTGTTGTTGCTCGCTACCGCTGTCGTGTTTTTGTTGA
TGTTGCTGTTGCCGCTGCTGTTGCTTTTGTTTTGTTGTCGTTGTTGTTGT
TGTTGTTGCTATTGCTGCTGCTGTTGCTGTTGCTGTTGTTGTTGATGTTG
TTGTGGTCGAGAAGAAGCCCCAACTTCTCCTTATCCTAACCCCCCACCCA
ACCACACCACGCCCCCCCCTCCGTGTCTCGCTAACGCGTTTTTAGCCGGC
CGTGGCGAACCCGTACCAGCCCAAAAAAGCGGTCGTGAACCCGTACGCCT
CCATGCAGGCGGCCGCCAAGAAGAAAGCAGCCGTCAACCCTTACGGTGCC
GCTGTCATCGCCGGTGGCAAGGGGAAGGCCCCGGCGGGGAAGTCTCCGGT
GAGCTATGTAGCTGTTACAAGGCACCTGTGGTCTGCAAGCAGGGGGGGCG
ATAGATCGGGGAGTTGTTTCGTCTGGGATTGGTTGGTGGCTGTGGTATTT
TACTCTTTGTACGGCGTGTACACTCGTCTCATATTACTCTGAACTGCTGT
TGCGCGCATTGGCTGGTGGCATCTTTACTTTGTGTACGGCGTGTGCATGT
CTCGATGACTCTGTTTCGCACAGAGGTTGCCTGACACGACTACACATCAG
GGTCAATTTTTCGGTTGCGATAAACCTCCACGACAACAGTAGTCTGGCCA
CCCGTTTGCCGCCGAAGATGAGTTCGGAAACACATTCATTGCCTTAATTT
CCTATCTCCACCGACTACCCGCAGGCTGGGACTTCCTCCTCCTCCTCCTC
ATCCTCGAAGGCTGCGGGCGGGGCGAGGGCGGCAGCGGCTGTCTGCCAGA
ACCCCGGCCAGATGTGGGTGGACAAGTACAAGCCGACTAGCTCGTCGGGG
GTGATCGGGCACGCCGGGCAGGTGAAGAAGCTCAAGGTCTGGCTGCAGAA
CTGGGAAGGGTGGCACCTCAAGGGCGCCAAGGCTCCGACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10746:148..4137-

>mRNA_Ecto-sp9_F_contig10746.649.1 ID=mRNA_Ecto-sp9_F_contig10746.649.1|Name=mRNA_Ecto-sp9_F_contig10746.649.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3594bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10746:148..4137- (Ectocarpus species9 EcSCA_722f female)
ATGGACATACGGTCCTTCTTCGGCCCTTCCTCGGGAGGGGCGGGCGGTGC
GGCCAAACCCAAGCCCAAGCCCAAGACACCGGCATCGGCGAGCAAGAAGG
GCGGTGGCCAGGCGAAGTCTCCGAGCAAGAAGGCCACCGCTAGCAGCAGC
GGCAGCAGCCCCAAGAGCAGCAGCAAGGGTGGTGTCGGCAAGATGACATG
GACATACGGTCCTTCTTCGGCCCTTCCTCGGGAGGGGCGGGCGGTGCGGC
CAAACCCAAGCCCAAGCCCAAGACACCGGCATCGGCGAGCAAGAAGGGCG
GTGGCCAGGCGAAGTCTCCGAGCAAGAAGGCCACCGCTAGCAGCAGCGGC
AGCAGCCCCAAGAGCAGCAGCAAGGGTGGTGTCGGCAAGATGACTTTGGA
GAGCACCTCCAAGACCAAGGCTTCTTCGAAAAAGGGGCAGAGCGCGTCCT
CCCAAGCAGCAGCAGCAGCAGCAGCAGAAGACAGCGACGACGACGTGGTC
GAAGTGACCCCGCAGCCCGCCAAAAATAAGAAGGATAGCACCTCGTCGGG
TTCACCCGCAGCGGCGAGTCCGGGCAAGAAGAAAGCAGCAGGAAGGGGCT
CGATAACAACAACCAGTGGTAGTAGCAGCAGCAGCAGCAGCAGGAAGAGA
GCGGCGAAGTCGGCCGTGAACTACAAGGAAGACGATGATGATGACGGTGA
GGGAGGGGGCGGGGACGATGATGACGACGACGAAGCCTTCAGCGGTTCCG
ACGCGAAAGACGAGGAAAGCGACAAGGACGACGACGACGATGACGCCGAC
GATGACGTCACGTCTAAGTCCCGCAAGCGGAAGTCGGGGGGCTCGCCGGC
GCCCAAGGCGGCGGCGCCTAAGGTGGCGGCGGCGGCCGCGTCGCCGAGCA
AGGCCAGCGTGAAGAAGAAGAAGAAGAGGGCGGTTGTGGAGGAGGATGAG
GAGGATGACGACGTACAGGAAGTCACCAGCTCCAAGCATTTCTCTTCGGC
GACAACCAAGAAGAAGACGGCGGCACCGGGCGGCGGCGGCAGCAGCAGCA
GCAGGAAAACGACTACGTCGTCCAAGGTAGACCTTGGCGGGACCTCGAGC
GACGAAGACGACGCACAAGAAGAAGAGGTGGCGCCCACCCCGCCGCCGAA
AAAGAAGCCGGCGCCGGCTAGCAGCAGTGGCAGTGCGAAGAAGACGCCCG
GCGGCGGCGGCGGCGGCTTTCGGCCGGCGTGGCGGGGCGGGGCGCGCCTC
GCGCCTCCGAACGAGGGGAAGAAGGAAGTGCCCGTCGGGAAGGAGCAATG
CCTTGCGGGGAAGGCGTTCGTGGTGAGCGGGGTGCTCGACTCGCTCGGGA
GGGAGGCGGCCGAGGACCTGATCAAGCAGTTTGGAGAGCACCTCCAAGAC
CAAGGCTTCTTCGAAAAAGGGGCAGAGCGCGTCCTCCCAAGCAGCAGCAG
CAGCAGCAGCAGAAGACAGCGACGACGACGTGGTCGAAGTGACCCCGCAG
CCCGCCAAAAATAAGAAGGATAGCACCTCGTCGGGTTCACCCGCAGCGGC
GAGTCCGGGCAAGAAGAAAGCAGCAGGAAGGGGCTCGATAACAACAACCA
GTGGTAGTAGCAGCAGCAGCAGCAGCAGGAAGAGAGCGGCGAAGTCGGCC
GTGAACTACAAGGAAGACGATGATGATGACGGTGAGGGAGGGGGCGGGGA
CGATGATGACGACGACGAAGCCTTCAGCGGTTCCGACGCGAAAGACGAGG
AAAGCGACAAGGACGACGACGACGATGACGCCGACGATGACGTCACGTCT
AAGTCCCGCAAGCGGAAGTCGGGGGGCTCGCCGGCGCCCAAGGCGGCGGC
GCCTAAGGTGGCGGCGGCGGCCGCGTCGCCGAGCAAGGCCAGCGTGAAGA
AGAAGAAGAAGAGGGCGGTTGTGGAGGAGGATGAGGAGGATGACGACGTA
CAGGAAGTCACCAGCTCCAAGCATTTCTCTTCGGCGACAACCAAGAAGAA
GACGGCGGCACCGGGCGGCGGCGGCAGCAGCAGCAGCAGGAAAACGACTA
CGTCGTCCAAGGTAGACCTTGGCGGGACCTCGAGCGACGAAGACGACGCA
CAAGAAGAAGAGGTGGCGCCCACCCCGCCGCCGAAAAAGAAGCCGGCGCC
GGCTAGCAGCAGTGGCAGTGCGAAGAAGACGCCCGGCGGCGGCGGCGGCG
GCTTTCGGCCGGCGTGGCGGGGCGGGGCGCGCCTCGCGCCTCCGAACGAG
GGGAAGAAGGAAGTGCCCGTCGGGAAGGAGCAATGCCTTGCGGGGAAGGC
GTTCGTGGTGAGCGGGGTGCTCGACTCGCTCGGGAGGGAGGCGGCCGAGG
ACCTGATCAAGCAGTACGGTGGCAAGGTGACCGGCGCCGTGAGCAGCAGG
ACCCACTTCCTGGTGCTGGGTACGGTGCTGGATGACGGACGGCCGCCGGA
AGAGGGCAGTACGGTGGCAAGGTGACCGGCGCCGTGAGCAGCAGGACCCA
CTTCCTGGTGCTGGGTACGGTGCTGGATGACGGACGGCCGCCGGAAGAGG
GCAGCAAGTACAAGAGGGCCATGGTGATGAAGACAACAATCATCGACGAG
GACGGCCTGTTCAAGATGCTCCGAGACTCCAACCCCAAGGGGCAGCAGCC
GTCGGGGGGTGGGAGCCAGGACCCTTCGTCGGCAGCAGCGGCTCCGGCCA
GCAAGCAAGTACAAGAGGGCCATGGTGATGAAGACAACAATCATCGACGA
GGACGGCCTGTTCAAGATGCTCCGAGACTCCAACCCCAAGGGGCAGCAGC
CGTCGGGGGGTGGGAGCCAGGACCCTTCGTCGGCAGCAGCGGCTCCGGCC
AGCAAGCCGGCCGTGGCGAACCCGTACCAGCCCAAAAAAGCGGTCGTGAA
CCCGTACGCCTCCATGCAGGCGGCCGCCAAGAAGAAAGCAGCCGTCAACC
CTTACGGTGCCGCTGTCATCGCCGGTGGCAAGGGGAAGGCCCCGGCGGGG
AAGTCTCCGCCGGCCGTGGCGAACCCGTACCAGCCCAAAAAAGCGGTCGT
GAACCCGTACGCCTCCATGCAGGCGGCCGCCAAGAAGAAAGCAGCCGTCA
ACCCTTACGGTGCCGCTGTCATCGCCGGTGGCAAGGGGAAGGCCCCGGCG
GGGAAGTCTCCGGCTGGGACTTCCTCCTCCTCCTCCTCATCCTCGAAGGC
TGCGGGCGGGGCGAGGGCGGCAGCGGCTGTCTGCCAGAACCCCGGCCAGA
TGTGGGTGGACAAGTACAAGCCGACTAGCTCGTCGGGGGTGATCGGGCAC
GCCGGGCAGGTGAAGAAGCTCAAGGTCTGGCTGCAGAACTGGGAAGGGTG
GCACCTCAAGGGCGCCAAGGCTCCGACGGCTGGGACTTCCTCCTCCTCCT
CCTCATCCTCGAAGGCTGCGGGCGGGGCGAGGGCGGCAGCGGCTGTCTGC
CAGAACCCCGGCCAGATGTGGGTGGACAAGTACAAGCCGACTAGCTCGTC
GGGGGTGATCGGGCACGCCGGGCAGGTGAAGAAGCTCAAGGTCTGGCTGC
AGAACTGGGAAGGGTGGCACCTCAAGGGCGCCAAGGCTCCGACG
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