mRNA_Ecto-sp9_F_contig10738.644.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: Putative (homoaconitate hydratase, N-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X0_ECTSI) HSP 1 Score: 266 bits (681), Expect = 3.010e-88 Identity = 127/134 (94.78%), Postives = 128/134 (95.52%), Query Frame = 1
Query: 1 VSTPMTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
VS PMTLTEKIIAKACDR SV+PNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWD EGVVIIPDHYIFTADPRANRNVDILRDFVNQQ DIKYFYDITDRGNFK NPDYKGVCHVALAQEGHTRPGEV
Sbjct: 80 VSEPMTLTEKIIAKACDRQSVAPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDPEGVVIIPDHYIFTADPRANRNVDILRDFVNQQ--DIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEV 211
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: 3-isopropylmalate (dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV3_9PHAE) HSP 1 Score: 266 bits (681), Expect = 5.330e-85 Identity = 127/134 (94.78%), Postives = 128/134 (95.52%), Query Frame = 1
Query: 1 VSTPMTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
VS PMTLTEKIIAKACDR SV+PNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWD EGVVIIPDHYIFTADPRANRNVDILRDFVNQQ DIKYFYDITDRGNFK NPDYKGVCHVALAQEGHTRPGEV
Sbjct: 70 VSEPMTLTEKIIAKACDRQSVAPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDPEGVVIIPDHYIFTADPRANRNVDILRDFVNQQ--DIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEV 201
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: 3-isopropylmalate (dehydratase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=X2KY86_SCYLO) HSP 1 Score: 260 bits (664), Expect = 3.080e-82 Identity = 124/134 (92.54%), Postives = 127/134 (94.78%), Query Frame = 1
Query: 1 VSTPMTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
VS PMT+TEKIIAKAC R SV+PNDNVWV+TDVLMTHDVCGPGTIGNFYKEFGPKAKVWD EGVVIIPD YIFTADPRANRNVDILRDFVNQQ DIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV
Sbjct: 89 VSEPMTVTEKIIAKACGRSSVAPNDNVWVRTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDPEGVVIIPDQYIFTADPRANRNVDILRDFVNQQ--DIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 220
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: 3-isopropylmalate (dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF1_9STRA) HSP 1 Score: 246 bits (629), Expect = 7.560e-78 Identity = 116/134 (86.57%), Postives = 123/134 (91.79%), Query Frame = 1
Query: 1 VSTPMTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
++ PMTLTEKIIAKACD+ V PNDNVWVKTDVLMTHDVCGPGTIGNFYKEFG AKVWD+EGVVIIPDHYIFTADPRANRNVDILR+F QQ ++KYFYDITDRGNFKVNPDYKGVCHVALAQEGH RPGEV
Sbjct: 18 IAQPMTLTEKIIAKACDKSVVRPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGADAKVWDNEGVVIIPDHYIFTADPRANRNVDILREFAAQQ--NLKYFYDITDRGNFKVNPDYKGVCHVALAQEGHCRPGEV 149
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: 3-isopropylmalate (dehydratase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKR2_KLENI) HSP 1 Score: 227 bits (579), Expect = 7.540e-70 Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = 1
Query: 1 VSTPMTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
V + MTLT+KI+A+A +RP V+P +NVWV TDVLMTHDVCGPGTIG F +EFG KAKVWD E VVIIPDHYIFTADPRANRNVDILRDFV +Q DIKYFYDITDR NFK NPDYKGVCHVALAQEGH RPGEV
Sbjct: 79 VKSAMTLTQKILARASERPYVAPGENVWVNTDVLMTHDVCGPGTIGIFKREFGEKAKVWDKEKVVIIPDHYIFTADPRANRNVDILRDFVQEQ--DIKYFYDITDRSNFKANPDYKGVCHVALAQEGHCRPGEV 210
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: 3-isopropylmalate (dehydratase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQJ8_PORUM) HSP 1 Score: 225 bits (574), Expect = 3.820e-69 Identity = 107/134 (79.85%), Postives = 117/134 (87.31%), Query Frame = 1
Query: 1 VSTPMTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
++TPMTLTEKI+AKA +R SV P DN+WV TDVLMTHDVCGPGTIG F +EFG AKVWD+E VVIIPDHYIFT D RANRNVDILRDFVN+Q IKYFYDI DR ++KVNPDYKGVCHVALAQEGHTRPGEV
Sbjct: 65 IATPMTLTEKILAKAAERGSVRPGDNIWVNTDVLMTHDVCGPGTIGVFKREFGEDAKVWDTEKVVIIPDHYIFTEDVRANRNVDILRDFVNEQG--IKYFYDIIDRSDYKVNPDYKGVCHVALAQEGHTRPGEV 196
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZPX3_9RHOD) HSP 1 Score: 215 bits (547), Expect = 1.350e-68 Identity = 104/134 (77.61%), Postives = 112/134 (83.58%), Query Frame = 1
Query: 1 VSTPMTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
V PMT+TEKI+AKA ++ V P DNVWV DVLMTHDVCGPGTIG F +EFG AKV+D E VVIIPDHYIFTAD RANRNVDILRDFV +Q IKYFYDITDR +FK NPDYKGVCHVALAQEGHTRPGEV
Sbjct: 51 VQQPMTITEKILAKAAEKDFVLPGDNVWVNVDVLMTHDVCGPGTIGVFKREFGQDAKVFDKEKVVIIPDHYIFTADERANRNVDILRDFVQEQG--IKYFYDITDRSDFKANPDYKGVCHVALAQEGHTRPGEV 182
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: 3-isopropylmalate (dehydratase large subunit-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3Y7F1_TOBAC) HSP 1 Score: 214 bits (544), Expect = 1.510e-68 Identity = 101/130 (77.69%), Postives = 109/130 (83.85%), Query Frame = 1
Query: 13 MTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
MT+TEKI+AKA D+P VSP DNVWV DVLMTHDVCGPG+IG F KEFG AKVWD E +VIIPDHYIFT D RANRNVDILRDF +Q +IKYFYDI D GNF+ NPDYKGVCHVALAQEGH RPGEV
Sbjct: 1 MTMTEKILAKASDKPEVSPGDNVWVNVDVLMTHDVCGPGSIGIFKKEFGQNAKVWDREKLVIIPDHYIFTTDERANRNVDILRDFCTEQ--NIKYFYDIKDLGNFRANPDYKGVCHVALAQEGHCRPGEV 128
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: 3-isopropylmalate (dehydratase (Fragment) n=1 Tax=Nostocaceae cyanobacterium TaxID=2723028 RepID=A0A838VPS6_9NOST) HSP 1 Score: 211 bits (538), Expect = 1.910e-68 Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 1
Query: 13 MTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
MTLTEKI+AKA R V P +N+WV D+LMTHDVCGPGTIG F +EFG AKVWD E +V+IPDHYIFT D RANRNVDILRDF ++Q +IKYFYDITDR NFK NPDYKGVCH+ALAQEGHTRPGEV
Sbjct: 3 MTLTEKILAKAAGRSVVEPGENIWVNVDLLMTHDVCGPGTIGVFQREFGADAKVWDKEKIVLIPDHYIFTNDERANRNVDILRDFASEQ--NIKYFYDITDRANFKANPDYKGVCHIALAQEGHTRPGEV 130
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Match: 3-isopropylmalate (dehydratase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ20_9STRA) HSP 1 Score: 223 bits (567), Expect = 3.940e-68 Identity = 105/131 (80.15%), Postives = 114/131 (87.02%), Query Frame = 1
Query: 10 PMTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDSEGVVIIPDHYIFTADPRANRNVDILRDFVNQQASDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEV 402
PMTLTEKI+A+A + SV+PNDNVWV+ D LMTHDVCGPGT G F KEFG AKVWD E V+IIPDHYIFT+DPRANRNVDILRDFV +Q +IKYFYDITDRG FK NPDYKGVCHVALAQEGHTRPGEV
Sbjct: 55 PMTLTEKILARAAGKESVAPNDNVWVRADNLMTHDVCGPGTFGLFKKEFGANAKVWDRERVLIIPDHYIFTSDPRANRNVDILRDFVQEQ--NIKYFYDITDRGEFKANPDYKGVCHVALAQEGHTRPGEV 183 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10738.644.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10738.644.1 >prot_Ecto-sp9_F_contig10738.644.1 ID=prot_Ecto-sp9_F_contig10738.644.1|Name=mRNA_Ecto-sp9_F_contig10738.644.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=130bp MTLTEKIIAKACDRPSVSPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPback to top mRNA from alignment at Ecto-sp9_F_contig10738:3320..4006- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10738.644.1 ID=mRNA_Ecto-sp9_F_contig10738.644.1|Name=mRNA_Ecto-sp9_F_contig10738.644.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=687bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10738:3320..4006- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10738:3320..4006- >mRNA_Ecto-sp9_F_contig10738.644.1 ID=mRNA_Ecto-sp9_F_contig10738.644.1|Name=mRNA_Ecto-sp9_F_contig10738.644.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10738:3320..4006- (Ectocarpus species9 EcSCA_722f female)back to top |