mRNA_Ecto-sp9_F_contig1072.637.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: SAP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVE2_9PHAE) HSP 1 Score: 673 bits (1736), Expect = 1.130e-239 Identity = 380/497 (76.46%), Postives = 386/497 (77.67%), Query Frame = 1
Query: 1 MRSWDAVVAGLLLCACSAPTGESFHLSPSSCWTSWSSASCSHRGRSATAPAGVAAAXXXXXXXXXXXXXXXXXXXXXXKICMTEDAATAATQQQYTAEDLEALSRSELQGLCKKLNLRAVGKTSELLSRVLESHDQARGEKTSGXXXXXXXXXXXXXXXXXXXXXXXXXAELLSSVDDGGNNTXXXXGTQEKATXXXXXXXXXXAAPSIDFFLEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTY---------------------------------VLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAELGARPSTVIPLQRVLEEAGQDGDVGLGGGVDDRGYSSIFHFTSEAIWNRVPIASSEGARE 1392
MRSWDAVVAGLLLCACSAPTGESFH PSS WTSWSSAS SH GRSAT+ A V AA KI M ED ATAATQQQYTA+DLEALSRSELQGLCKKLNLRAVGKTSELLSRVLES D AR EK G AELLSSVDDGGNNT G+QEKAT XXXXXXXXXAAPS DFFLED+RPVFD+LSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFED TY VLDVGTGGGLPGLPLAICFP VKFTLIDGRGKKIKAVADMADRLGL NVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPN GRTSNPADS+SSSSNN SLKRGILYMRGEVS EELAELGARPSTVIPLQRVLEEAGQDGDVGLGGG DDRGYSSIFHFTSEAIWNRVPIASS GA E
Sbjct: 1 MRSWDAVVAGLLLCACSAPTGESFHFPPSSRWTSWSSASSSHSGRSATSSADVPAATTRRSSRHHSPRRSRRISRRSSKIRMAEDGATAATQQQYTAQDLEALSRSELQGLCKKLNLRAVGKTSELLSRVLESDDHARREKALGTKPATTESTASSSPKDEAPMGESTMAELLSSVDDGGNNTNYSSGSQEKATPXXXXXXXXXAAPSTDFFLEDIRPVFDELSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDGTYGEMRGAGEDPSRTLPPDPQPPPRREYLPSLSWSVLDVGTGGGLPGLPLAICFPMVKFTLIDGRGKKIKAVADMADRLGLRNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNDGRTSNPADSSSSSSNN-SLKRGILYMRGEVSEEELAELGARPSTVIPLQRVLEEAGQDGDVGLGGGADDRGYSSIFHFTSEAIWNRVPIASSGGASE 496
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Z1_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.110e-56 Identity = 104/213 (48.83%), Postives = 139/213 (65.26%), Query Frame = 1
Query: 619 PSIDFFLEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAELGARPSTVIPLQRVL 1257
P F ++V KLS++QWA++ +LG LLTEWN K+NLISRKDI NVM RH++PCLAMA ++D + V+DVGTGGGLPGLPLAIC P+ +F L+D RGKKI+AVADMA+RLGL +V+ H R E++ E D ++GR+VT LP+F+ + KNL G P S + RGI Y++G +EL + +P I L V
Sbjct: 46 PKSRVFDQEVYNALPKLSNDQWAQLEKLGDLLTEWNEKVNLISRKDIDNVMVRHILPCLAMAASIDIDPGWTVMDVGTGGGLPGLPLAICNPQTQFLLVDARGKKIEAVADMAERLGLAHVKALHTRVEDINEPCDLILGRSVTALPRFMMWTRKNLVHPG-----PPGS--------TKMRGIAYIKGGNFEDELGGIDLKPEKAIALNTVF 245
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: Ribosomal (RNA small subunit methyltransferase G n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A2D6WPG1_9BACT) HSP 1 Score: 178 bits (451), Expect = 9.000e-50 Identity = 92/208 (44.23%), Postives = 130/208 (62.50%), Query Frame = 1
Query: 637 LEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAELGARPSTVIPLQRVLE 1260
L ++ +F + E W K+ +LL+EWN K+NLISRKDI + RH+V CLA+ L + +LDVGTGGGLPGLP+AIC+P+ +FTLID GKKIKAV +A+ LGL NVR +RAE++ E FDF+ GRAV NLP+F+ +I N + + +SL G+LY +G +ELA G P+ + L+++L+
Sbjct: 3 LAALKDLFPHIHPEAWFKLEYWCELLSEWNEKINLISRKDIDALAERHLVHCLAVTNILQIKGSARILDVGTGGGLPGLPMAICYPQAQFTLIDSVGKKIKAVQSIANTLGLKNVRACQMRAEQLGEHFDFITGRAVKNLPEFLSWIQNNARKG---------------HKHSLANGLLYWKGGAYSDELAPTGYVPNRIYDLEKMLK 195
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: 16s (rrna methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNU2_9STRA) HSP 1 Score: 176 bits (447), Expect = 3.680e-48 Identity = 107/255 (41.96%), Postives = 148/255 (58.04%), Query Frame = 1
Query: 634 FLEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALD-FEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLK--PNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAE-LGA-RPSTVIPLQRVLEEAGQDGDVGLGGGVDDRGYSSIFHFTSEAIWNRVPIASSEG 1383
F + F +L+ QW ++ +LG L+ EWN K+N+ISRKD+ NV+ HV+PC+ ++K L + T V+DVGTGGG PGLPLAIC P+VKF L+D GKK++ V DMA RLGL NVR H R EEV E F+FV GR+VT +P+FVG++ L P+ P D GILY++G VS E E LG P+ P+ ++ GG G S+ HF+ + + R P A+++G
Sbjct: 60 FTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDD-------------GILYIKGGVSDETQEEDLGGWMPTGRYPIGELI------------GGDVYGGDKSVLHFSVQDL-RRGPDANAKG 288
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: Ribosomal (RNA small subunit methyltransferase G n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3BQH1_9SPHI) HSP 1 Score: 172 bits (435), Expect = 1.920e-47 Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 1
Query: 637 LEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAELGARPSTVIPLQRVLEE 1263
++ + F +L+ Q + QLG + EWN K+NLISRKD+ N+ RH++ L +AK ++F T ++DVGTGGG PG+PLAI FP+V FTL+D GKKIK V ++A+ L L NVR FH RAEE+ FDF+ GRAVT++ F G++ +K + N L GILY++G EELA R + V PL EE
Sbjct: 4 IDIITKYFHELNPAQIKQFEQLGIVFPEWNDKINLISRKDVENLYERHILHSLGIAKVINFSSGTQIMDVGTGGGFPGIPLAIMFPEVAFTLVDSIGKKIKVVQEVAEALELKNVRAFHARAEEIPGKFDFITGRAVTDINAFYGWVRGKIK---------------TKQQNGLPNGILYLKGGDMKEELAPFRKR-AQVFPLDHFFEE 196
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: Ribosomal (RNA small subunit methyltransferase G n=1 Tax=Verrucomicrobiae bacterium DG1235 TaxID=382464 RepID=B5JH71_9BACT) HSP 1 Score: 172 bits (435), Expect = 1.920e-47 Identity = 90/197 (45.69%), Postives = 123/197 (62.44%), Query Frame = 1
Query: 625 IDFFLEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAEL 1215
++F L V +LS EQ A++ Q +L+ EWN K+NLISR D+ N+ RH++ LA+AK + F+ D+ V+DVGTGGG PG+PLAI FP+ +F L+D GKKIK V D +RLGLTN F+ R EEV DF++ RAVT LPKF+ +I K +K +G N L G+LY++G EELA +
Sbjct: 1 MNFDLSIVSKHLPELSPEQIAQLAQYAELIAEWNSKINLISRSDVENLPKRHILHSLAIAKVMAFQPDSTVIDVGTGGGFPGIPLAIAFPETRFLLVDSIGKKIKVVQDCIERLGLTNAVAFNCRVEEVDRQVDFIVARAVTQLPKFMDWIRKKIKRSGF---------------NELPNGVLYLKGGDLAEELASI 182
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: Ribosomal (RNA small subunit methyltransferase G n=3 Tax=Bacteroidetes TaxID=976 RepID=A0A0F2NWQ1_9FLAO) HSP 1 Score: 171 bits (434), Expect = 2.310e-47 Identity = 89/202 (44.06%), Postives = 125/202 (61.88%), Query Frame = 1
Query: 658 FDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAELGARPSTVIPLQRVLEE 1263
F LS+EQ + L L +WN ++N+ISRKDI + +HV+ LA+AK +DF+D T VLDVGTGGG PG+PLAI +P +F L+D GKKIK V ++ADRLGLTN++ +H RAE+V FDF++ RAVT + KF+ ++ L PNG + LK GIL+++G EE+ E + + P+ EE
Sbjct: 8 FTNLSEEQLEQFAMLAPLYKDWNAQINVISRKDIDELYLKHVLHSLAIAKVVDFKDGTKVLDVGTGGGFPGIPLAILYPNCQFVLVDSIGKKIKVVNEIADRLGLTNIKAYHQRAEDVSGQFDFIVTRAVTRIAKFLPWVKGKLLPNG---------------EHELKNGILFLKGGDLAEEIEESNKKVE-IFPISDFFEE 193
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: Ribosomal (RNA small subunit methyltransferase G n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24) TaxID=583355 RepID=D5EM03_CORAD) HSP 1 Score: 171 bits (432), Expect = 6.150e-47 Identity = 90/210 (42.86%), Postives = 124/210 (59.05%), Query Frame = 1
Query: 637 LEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAELGARPSTVIPLQRVLEEA 1266
+E +R F + D W + + LL EWN K+NLISRKDI ++ RH+ CL + L + ++DVGTGGG PGL +AIC+P+ +FTL+D GKKI VAD+A+RLGL NV RAE + + FDF+ GRAV NLP++ +I NL+ G R NS+ G+LY +G EL LG RP I +++ LE+A
Sbjct: 1 MEQIRARFPNVDDGTWTLLAEWATLLREWNEKINLISRKDIEHLEERHLAHCLVITNHLRLMNGARIMDVGTGGGFPGLIMAICYPQAQFTLVDSIGKKIGVVADIAERLGLRNVEARQCRAESIRKEFDFITGRAVKNLPEYFSWIKGNLR-RGQR--------------NSIPNGVLYWKGGELEPELEALGIRPRLSIDVEQALEDA 195
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: Ribosomal (RNA small subunit methyltransferase G n=1 Tax=Acetobacteroides hydrogenigenes TaxID=979970 RepID=A0A4R2EV33_9BACT) HSP 1 Score: 169 bits (429), Expect = 1.220e-46 Identity = 89/207 (43.00%), Postives = 128/207 (61.84%), Query Frame = 1
Query: 637 LEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAELGARPSTVIPLQRVL 1257
+E + F L++EQ + G L +L TEWN K+N+ISRKDI N+ +H++ LA+AK + F+ T VLDVGTGGG PG+PLAI FP+V FTL+D GKKI V ++A+ +GL NV+ +RAE++ E +DFV+ RAVT++ F ++ K +KP G N+L GILY++G +EL+ IP RV+
Sbjct: 1 MEIIEKYFPNLTEEQKRQFGMLRELYTEWNEKINVISRKDIDNIYTKHILHSLAIAKVISFKKGTKVLDVGTGGGFPGIPLAIMFPEVSFTLVDSIGKKITVVQNIANSIGLKNVKAMQIRAEQLPENYDFVVSRAVTDIKTFCSWVWKKIKPKG---------------ENALPNGILYLKGGDLTDELS--------TIPYPRVV 184
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Match: Ribosomal (RNA small subunit methyltransferase G n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A2D7F536_9BACT) HSP 1 Score: 170 bits (430), Expect = 1.250e-46 Identity = 90/207 (43.48%), Postives = 123/207 (59.42%), Query Frame = 1
Query: 637 LEDVRPVFDKLSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDDTYVLDVGTGGGLPGLPLAICFPKVKFTLIDGRGKKIKAVADMADRLGLTNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNGGRTSNPADSNSSSSNNNSLKRGILYMRGEVSMEELAELGARPSTVIPLQRVL 1257
L D + +F + ++ W + + +LL EWN K+NLISRKDI + RH++ CLA+ L +LDVGTGGGLPGLP+AIC+P+ KFTLID KK++ V +AD LGL NV VRAE + FDFV GRAV NLP+F+ +I NL+ + +SL G++Y +G EL LG + TV+ L+ VL
Sbjct: 3 LADYQQLFPNIPEDAWPVLERWAELLREWNTKINLISRKDIDALEERHLLHCLAITNVLILNKGARILDVGTGGGLPGLPMAICYPQAKFTLIDSIAKKVEVVQTIADELGLKNVVARQVRAEALKTQFDFVTGRAVKNLPEFLSWIQNNLEKG---------------DXHSLPNGVIYWKGGSIEAELNPLGIQSKTVVELENVL 194 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1072.637.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1072.637.1 >prot_Ecto-sp9_F_contig1072.637.1 ID=prot_Ecto-sp9_F_contig1072.637.1|Name=mRNA_Ecto-sp9_F_contig1072.637.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=465bp MRSWDAVVAGLLLCACSAPTGESFHLSPSSCWTSWSSASCSHRGRSATAPback to top mRNA from alignment at Ecto-sp9_F_contig1072:1398..3773- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1072.637.1 ID=mRNA_Ecto-sp9_F_contig1072.637.1|Name=mRNA_Ecto-sp9_F_contig1072.637.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2376bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1072:1398..3773- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1072:1398..3773- >mRNA_Ecto-sp9_F_contig1072.637.1 ID=mRNA_Ecto-sp9_F_contig1072.637.1|Name=mRNA_Ecto-sp9_F_contig1072.637.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2790bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1072:1398..3773- (Ectocarpus species9 EcSCA_722f female)back to top |