mRNA_Ecto-sp9_F_contig10718.636.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10718.636.1
Unique NamemRNA_Ecto-sp9_F_contig10718.636.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10718.636.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJL2_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 5.780e-148
Identity = 308/349 (88.25%), Postives = 308/349 (88.25%), Query Frame = 1 
Query:    1 MRRRRWTQQELYGSAPSLSEPSRNVYAAAGYSAKQAVSRAASISDATRSDRTEQRNAWRAGASASGPIPTAQDDEKSQQQRQPDHVPTMEPLTRAGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRVRGRNSSGAGVEAMRPAPKGAVGMGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEPAFDLAGFEEKLGGGLIVTKINRQGRAKVRALFYDRQERMLWWNEPGRGSPHRSSLLSIKKEQPLAVASLIKVEMADQLDEPFCFDGDVDKSFQLVFPARTVDLVAKDAEEAALLARGFQ 1047
            MRRRRWTQQELYGSAP LSEPSRNVYAAAGYSAKQAVSRAASISDATRSDRTEQRNAWRAGASASGPIPTAQDDEK QQQRQPDHVPTMEPLTRAGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RRVRGRNSSGAGVEAMRPAPKGAVGMGKV  XXXXXXXX                                    PAEPAFDLAGFEEKLGGGLIVTKINRQGRAKVRALFYDRQERMLWWNEPGRGSPHRSSLLSIKKEQPLAVASLIKVEMADQLDEPFCFDGDVDKSFQLVFPARTVDLVAKDAEEAALLARGFQ
Sbjct:    1 MRRRRWTQQELYGSAPCLSEPSRNVYAAAGYSAKQAVSRAASISDATRSDRTEQRNAWRAGASASGPIPTAQDDEKKQQQRQPDHVPTMEPLTRAGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RRVRGRNSSGAGVEAMRPAPKGAVGMGKVGAXXXXXXXXGAGSRSQGGPSEYNSRNGSQSSSGSRPAAVAAAPA-PAEPAFDLAGFEEKLGGGLIVTKINRQGRAKVRALFYDRQERMLWWNEPGRGSPHRSSLLSIKKEQPLAVASLIKVEMADQLDEPFCFDGDVDKSFQLVFPARTVDLVAKDAEEAALLARGFQ 347
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10718.636.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.780e-14888.25protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJL2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10718contigEcto-sp9_F_contig10718:1577..4093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-17_002420.1
Exons3
Model size1059
Cds size1059
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10718.636.1prot_Ecto-sp9_F_contig10718.636.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10718 1577..4093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928291.5819228-CDS-Ecto-sp9_F_contig10718:1576..16781622928291.5819228-CDS-Ecto-sp9_F_contig10718:1576..1678Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10718 1577..1678 +
1692277823.7448773-CDS-Ecto-sp9_F_contig10718:1576..16781692277823.7448773-CDS-Ecto-sp9_F_contig10718:1576..1678Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10718 1577..1678 +
1622928291.6437025-CDS-Ecto-sp9_F_contig10718:2177..29781622928291.6437025-CDS-Ecto-sp9_F_contig10718:2177..2978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10718 2178..2978 +
1692277823.7622993-CDS-Ecto-sp9_F_contig10718:2177..29781692277823.7622993-CDS-Ecto-sp9_F_contig10718:2177..2978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10718 2178..2978 +
1622928291.655769-CDS-Ecto-sp9_F_contig10718:3937..40931622928291.655769-CDS-Ecto-sp9_F_contig10718:3937..4093Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10718 3938..4093 +
1692277823.773252-CDS-Ecto-sp9_F_contig10718:3937..40931692277823.773252-CDS-Ecto-sp9_F_contig10718:3937..4093Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10718 3938..4093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10718.636.1

>prot_Ecto-sp9_F_contig10718.636.1 ID=prot_Ecto-sp9_F_contig10718.636.1|Name=mRNA_Ecto-sp9_F_contig10718.636.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=353bp
MRRRRWTQQELYGSAPSLSEPSRNVYAAAGYSAKQAVSRAASISDATRSD
RTEQRNAWRAGASASGPIPTAQDDEKSQQQRQPDHVPTMEPLTRAGSGGG
GGSRSGASGSGGGGRSRQPPLSSAGSAAGGRENVDARGAAAGGGGGGGNG
GRRVRGRNSSGAGVEAMRPAPKGAVGMGKVGAAGAAGAAAVGAGSRSQGG
PSDYNSRNSSQSSAGSRPAAVAAAPAPAEPAFDLAGFEEKLGGGLIVTKI
NRQGRAKVRALFYDRQERMLWWNEPGRGSPHRSSLLSIKKEQPLAVASLI
KVEMADQLDEPFCFDGDVDKSFQLVFPARTVDLVAKDAEEAALLARGFQV
GV*
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mRNA from alignment at Ecto-sp9_F_contig10718:1577..4093+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10718.636.1 ID=mRNA_Ecto-sp9_F_contig10718.636.1|Name=mRNA_Ecto-sp9_F_contig10718.636.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2517bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10718:1577..4093+ (Ectocarpus species9 EcSCA_722f female)
ATGCGACGACGACGCTGGACACAACAGGAGCTCTACGGATCAGCGCCATC
TTTATCGGAGCCCTCCCGAAACGTATACGCTGCTGCGGGCTATTCCGCCA
AGGTGAGGAAGAGCTATGTTTGTCGTCAGTTCCGGATTGGTTGAAATGTT
CTTGAAATGTTCGTCGTCTTTTTGTGGTTTTTTTTCACCAATCCGGATTG
GTCGAAGTCTTCGTTGTCTCTTTTTGGTTTGTCGTTAATCCGGATTGGTC
GAAACGCTTGCTGTCTCTCTTTGGTTTGCCGTCAATCCGGATTGTTGGAT
CGTTTGTTTCCTGCTTCGGAGGTTCTGATAGCTAGAAAATGTGGACATTG
TCCGCAAGGGGGTTGGTTCTACCGTGTGAGGGAGGGGAGAGAAAAGATAG
CGATGGTGTGGACTCTCAAGGCGGAAAAATGGAACCATGAGTAATATGTA
TTGGTGTGTTGCGCTTCTGGAGCAAATTTTTCGCTCGTTTGCACACCCTG
TTTTGTTTTTCCTAAACTCGCATCGACCGCGCTAACCGGCTAACCAGTGA
AAAGACGTCAATCTTTGTGTGTATTTGTGTGTGCGCCTGCCTACCCGGCA
GCAGGCGGTCTCGCGAGCGGCCTCGATCTCCGACGCGACAAGGTCCGACC
GAACCGAACAGAGGAACGCCTGGAGAGCGGGGGCTTCGGCCTCCGGCCCG
ATACCCACCGCGCAAGACGACGAAAAAAGCCAGCAGCAGCGACAACCTGA
CCACGTGCCGACCATGGAGCCGCTCACGCGCGCCGGGAGCGGCGGGGGCG
GGGGGTCCAGGAGCGGTGCAAGCGGCAGCGGCGGTGGCGGCAGATCGCGG
CAGCCGCCGCTGTCATCTGCCGGTTCCGCCGCCGGCGGTCGGGAGAACGT
AGACGCTCGCGGAGCTGCTGCTGGCGGCGGCGGCGGCGGCGGTAACGGCG
GCCGTCGCGTTCGCGGCCGTAACAGTAGCGGTGCGGGCGTCGAAGCGATG
CGACCGGCGCCGAAGGGTGCGGTGGGGATGGGAAAGGTTGGGGCGGCTGG
CGCCGCAGGCGCCGCCGCCGTAGGCGCGGGGTCGAGATCGCAGGGCGGAC
CGTCGGACTACAACTCGAGGAACAGCTCTCAGTCTTCTGCCGGTAGCAGG
CCCGCGGCGGTGGCGGCGGCGCCCGCCCCCGCCGAGCCCGCCTTCGACCT
GGCCGGTTTCGAGGAAAAGCTGGGGGGGGGGCTGATCGTGACGAAGATCA
ACCGGCAGGGGAGGGCCAAGGTGCGCGCGCTGTTCTACGACCGGCAGGAG
AGGATGCTGTGGTGGAACGAGCCGGGGAGAGGCTCGCCGCACCGGTCGTC
GCTTCTGTCCATCAAGAAGGAGCAGCCGCTAGCGGTGGCCTCGCTCATTA
AGGTGCGGCTGTGTCTTTTCCCCGAAGCGTATGGGTGGGTTTGTTCGCTC
GTGAAGGTTGGTGGGTTGTCGAGCCGATGGGTGGGTCTTGTCTTTTGTTC
GCTGGTGACCATCGCCCCTGTTGTAGTGCGTACCCTCACCACCCTGCCGT
TCCCGCTAAGCATGGACTCCTTTCGGAAGGAAGAGAGGCCCGAATGAATA
CCTACCGTGCCTGTTTGTAGGAGAGTTGGGTGCCCTGCGTGACCCCGGCT
GGTTCGTCACACATTGGTATTCGCCGAAAGGTGTGTAGAATGGCGCGGTA
ATAGGTGGGACAAACACAGCAGCACACACACACACACACATGCGTCACGG
GGTCCCCGATCATGGCCTGGAGAAGAGTTTTCGGCTTTCAGCGGCGCTGA
CACTGACGTATTTTCATTGGTTAGCGCGGTTGATGCTGTTATACATGGAA
ACACGCACAATCACACACAGGATGTGTTTCGTCTTCGCCGGGGGGGGGTG
CGTGACCAATGGTCGGCCTTGTGGCCAGGAGTCTCTTTGTCTTCTTCCCC
CGCTCACCTACGGTTGATCGGTCCTGTCCGACAATGCTCCGTCCTCTTGA
GGACGCGTGGTCAATGGTCTATCCGCTAAGACATTCAGAACATACGACCC
CCCCCCCCCCCCCCGCCGCTCACCTTCGATTGACCATCGTTGATGGGTCC
TGTGGGAACAATGCTCCGTCCTCTCGAGCACGCGTGGTCAACCGCTAAGG
CATGCAAAACAGGCGGACGCGTGGTCAATGATATAGGGCACGCAGAACAT
GAAGACGCGTGGTCAATGGCCTAGCCGCTACAGGGCATGCAAAGCATGAT
GATGCGTGGTCAATCGTGTAACCGCTAAGGCGTACGAAACATGAGGACGC
ATGGTCAATGGTCTAACCGCTACGGCATGCAAAACCTGAGTCCCCACCGC
TTTACCTGCAGGTGGAGATGGCAGACCAGCTGGACGAACCGTTCTGCTTC
GACGGGGATGTAGACAAGAGCTTCCAGCTCGTCTTCCCCGCTAGGACGGT
GGACCTCGTCGCGAAAGACGCGGAGGAGGCGGCTCTCTTGGCGAGAGGAT
TCCAGGTGGGTGTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10718:1577..4093+

>mRNA_Ecto-sp9_F_contig10718.636.1 ID=mRNA_Ecto-sp9_F_contig10718.636.1|Name=mRNA_Ecto-sp9_F_contig10718.636.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2118bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10718:1577..4093+ (Ectocarpus species9 EcSCA_722f female)
ATGCGACGACGACGCTGGACACAACAGGAGCTCTACGGATCAGCGCCATC
TTTATCGGAGCCCTCCCGAAACGTATACGCTGCTGCGGGCTATTCCGCCA
AGATGCGACGACGACGCTGGACACAACAGGAGCTCTACGGATCAGCGCCA
TCTTTATCGGAGCCCTCCCGAAACGTATACGCTGCTGCGGGCTATTCCGC
CAAGCAGGCGGTCTCGCGAGCGGCCTCGATCTCCGACGCGACAAGGTCCG
ACCGAACCGAACAGAGGAACGCCTGGAGAGCGGGGGCTTCGGCCTCCGGC
CCGATACCCACCGCGCAAGACGACGAAAAAAGCCAGCAGCAGCGACAACC
TGACCACGTGCCGACCATGGAGCCGCTCACGCGCGCCGGGAGCGGCGGGG
GCGGGGGGTCCAGGAGCGGTGCAAGCGGCAGCGGCGGTGGCGGCAGATCG
CGGCAGCCGCCGCTGTCATCTGCCGGTTCCGCCGCCGGCGGTCGGGAGAA
CGTAGACGCTCGCGGAGCTGCTGCTGGCGGCGGCGGCGGCGGCGGTAACG
GCGGCCGTCGCGTTCGCGGCCGTAACAGTAGCGGTGCGGGCGTCGAAGCG
ATGCGACCGGCGCCGAAGGGTGCGGTGGGGATGGGAAAGGTTGGGGCGGC
TGGCGCCGCAGGCGCCGCCGCCGTAGGCGCGGGGTCGAGATCGCAGGGCG
GACCGTCGGACTACAACTCGAGGAACAGCTCTCAGTCTTCTGCCGGTAGC
AGGCCCGCGGCGGTGGCGGCGGCGCCCGCCCCCGCCGAGCCCGCCTTCGA
CCTGGCCGGTTTCGAGGAAAAGCTGGGGGGGGGGCTGATCGTGACGAAGA
TCAACCGGCAGGGGAGGGCCAAGGTGCGCGCGCTGTTCTACGACCGGCAG
GAGAGGATGCTGTGGTGGAACGAGCCGGGGAGAGGCTCGCCGCACCGGTC
GTCGCTTCTGTCCATCAAGAAGGAGCAGCCGCTAGCGGTGGCCTCGCTCA
TTAAGCAGGCGGTCTCGCGAGCGGCCTCGATCTCCGACGCGACAAGGTCC
GACCGAACCGAACAGAGGAACGCCTGGAGAGCGGGGGCTTCGGCCTCCGG
CCCGATACCCACCGCGCAAGACGACGAAAAAAGCCAGCAGCAGCGACAAC
CTGACCACGTGCCGACCATGGAGCCGCTCACGCGCGCCGGGAGCGGCGGG
GGCGGGGGGTCCAGGAGCGGTGCAAGCGGCAGCGGCGGTGGCGGCAGATC
GCGGCAGCCGCCGCTGTCATCTGCCGGTTCCGCCGCCGGCGGTCGGGAGA
ACGTAGACGCTCGCGGAGCTGCTGCTGGCGGCGGCGGCGGCGGCGGTAAC
GGCGGCCGTCGCGTTCGCGGCCGTAACAGTAGCGGTGCGGGCGTCGAAGC
GATGCGACCGGCGCCGAAGGGTGCGGTGGGGATGGGAAAGGTTGGGGCGG
CTGGCGCCGCAGGCGCCGCCGCCGTAGGCGCGGGGTCGAGATCGCAGGGC
GGACCGTCGGACTACAACTCGAGGAACAGCTCTCAGTCTTCTGCCGGTAG
CAGGCCCGCGGCGGTGGCGGCGGCGCCCGCCCCCGCCGAGCCCGCCTTCG
ACCTGGCCGGTTTCGAGGAAAAGCTGGGGGGGGGGCTGATCGTGACGAAG
ATCAACCGGCAGGGGAGGGCCAAGGTGCGCGCGCTGTTCTACGACCGGCA
GGAGAGGATGCTGTGGTGGAACGAGCCGGGGAGAGGCTCGCCGCACCGGT
CGTCGCTTCTGTCCATCAAGAAGGAGCAGCCGCTAGCGGTGGCCTCGCTC
ATTAAGGTGGAGATGGCAGACCAGCTGGACGAACCGTTCTGCTTCGACGG
GGATGTAGACAAGAGCTTCCAGCTCGTCTTCCCCGCTAGGACGGTGGACC
TCGTCGCGAAAGACGCGGAGGAGGCGGCTCTCTTGGCGAGAGGATTCCAG
GTGGGTGTCTAGGTGGAGATGGCAGACCAGCTGGACGAACCGTTCTGCTT
CGACGGGGATGTAGACAAGAGCTTCCAGCTCGTCTTCCCCGCTAGGACGG
TGGACCTCGTCGCGAAAGACGCGGAGGAGGCGGCTCTCTTGGCGAGAGGA
TTCCAGGTGGGTGTCTAG
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