mRNA_Ecto-sp9_F_contig10715.635.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10715.635.1
Unique NamemRNA_Ecto-sp9_F_contig10715.635.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10715.635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.560e-26
Identity = 52/60 (86.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 MKGGQRRAFWLGGSPDEGGSCT-VITDLRQRASRLRGGSVGICRCSRRAYQGGAQQQGSF 177
            MKGGQRR F L GSPDEGGSCT VITDLRQRASR RGGSVGICRCSRRAYQGG Q QG F
Sbjct:    1 MKGGQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFF 60
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BLAST of mRNA_Ecto-sp9_F_contig10715.635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.670e-25
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    4 KGGQRRAFWLGGSPDEGGSCTVITDLRQRASRLRGGSVGICRCSRRAYQGGAQQQGSFAGGW 189
            +GG  + F LGGS DEGGSC+VITDLRQRASR RGGSV ICRCSRRAYQGG QQQGS   GW
Sbjct:    4 EGGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRRAYQGGEQQQGSLLVGW 65
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BLAST of mRNA_Ecto-sp9_F_contig10715.635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.510e-13
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   47 MKGGAAQ-SSQISANALPD*GGAAWAFVVVVGALTRVARSSRVLLPVG 187
            MKGGAAQ SSQISANALPD GGAAWAFVVVVGALTRV  SSR  L  G
Sbjct:    1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSRFFLAGG 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10715.635.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.560e-2686.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.670e-2577.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.510e-1383.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10715contigEcto-sp9_F_contig10715:745..972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928291.5329316-CDS-Ecto-sp9_F_contig10715:744..9721622928291.5329316-CDS-Ecto-sp9_F_contig10715:744..972Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10715 745..972 -
1692277823.73559-CDS-Ecto-sp9_F_contig10715:744..9721692277823.73559-CDS-Ecto-sp9_F_contig10715:744..972Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10715 745..972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10715.635.1prot_Ecto-sp9_F_contig10715.635.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10715 745..972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10715.635.1

>prot_Ecto-sp9_F_contig10715.635.1 ID=prot_Ecto-sp9_F_contig10715.635.1|Name=mRNA_Ecto-sp9_F_contig10715.635.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=76bp
MKGGQRRAFWLGGSPDEGGSCTVITDLRQRASRLRGGSVGICRCSRRAYQ
GGAQQQGSFAGGWEEPESAWKWREDP
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mRNA from alignment at Ecto-sp9_F_contig10715:745..972-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10715.635.1 ID=mRNA_Ecto-sp9_F_contig10715.635.1|Name=mRNA_Ecto-sp9_F_contig10715.635.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10715:745..972- (Ectocarpus species9 EcSCA_722f female)
ATGAAGGGGGGGCAGCGCAGGGCTTTTTGGTTGGGCGGTTCTCCAGATGA
AGGGGGGAGCTGCACAGTCATCACAGATCTCCGCCAACGCGCTTCCAGAT
TAAGGGGGGGCAGCGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTACCAG
GGTGGCGCGCAGCAGCAGGGTTCTTTTGCCGGTGGGTGGGAGGAGCCGGA
GTCCGCTTGGAAATGGAGAGAAGACCCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10715:745..972-

>mRNA_Ecto-sp9_F_contig10715.635.1 ID=mRNA_Ecto-sp9_F_contig10715.635.1|Name=mRNA_Ecto-sp9_F_contig10715.635.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10715:745..972- (Ectocarpus species9 EcSCA_722f female)
ATGAAGGGGGGGCAGCGCAGGGCTTTTTGGTTGGGCGGTTCTCCAGATGA
AGGGGGGAGCTGCACAGTCATCACAGATCTCCGCCAACGCGCTTCCAGAT
TAAGGGGGGGCAGCGTGGGCATTTGTCGTTGTAGTCGGCGCGCTTACCAG
GGTGGCGCGCAGCAGCAGGGTTCTTTTGCCGGTGGGTGGGAGGAGCCGGA
GTCCGCTTGGAAATGGAGAGAAGACCCCATGAAGGGGGGGCAGCGCAGGG
CTTTTTGGTTGGGCGGTTCTCCAGATGAAGGGGGGAGCTGCACAGTCATC
ACAGATCTCCGCCAACGCGCTTCCAGATTAAGGGGGGGCAGCGTGGGCAT
TTGTCGTTGTAGTCGGCGCGCTTACCAGGGTGGCGCGCAGCAGCAGGGTT
CTTTTGCCGGTGGGTGGGAGGAGCCGGAGTCCGCTTGGAAATGGAGAGAA
GACCCC
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