mRNA_Ecto-sp9_F_contig1071.632.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1071.632.1
Unique NamemRNA_Ecto-sp9_F_contig1071.632.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1071.632.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUQ1_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 1.340e-83
Identity = 151/179 (84.36%), Postives = 157/179 (87.71%), Query Frame = 3 
Query:   69 MNKPGHVSTASYLPCSTQSASQPGRRRARSQLTKLPTTSSYLLLLLLL-CHRQREHLVHGLVSPSHGGVARRTFSRTSGVSGSSASTAGGSPRWDGRCPRPKHGLKMTLTSPPPRTQQQQETETINGGTQSVREMSAQMSQMRKDLEENEEAQAYMQALRGAGIRDYASAEGEMRLLEI 602
            MNKPGH S ASYLP  TQSASQPGRRRARSQLTKL TT           C RQREHLV+GLV+PSH GVA+ TFSR+SGVSGSSAST GGSPRW GRCPR KHGL+MT+TSPPPRTQQQQETETINGGTQSVREMSAQMSQMRKDLEENEEAQAYMQALRGAGIRDYASAEGEMRLLEI
Sbjct:    1 MNKPGHRSKASYLPRYTQSASQPGRRRARSQLTKLATTXXXXXXXXXXXCRRQREHLVYGLVAPSHVGVAKSTFSRSSGVSGSSASTVGGSPRWYGRCPRTKHGLEMTVTSPPPRTQQQQETETINGGTQSVREMSAQMSQMRKDLEENEEAQAYMQALRGAGIRDYASAEGEMRLLEI 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1071.632.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Protein1.340e-8384.36kinase domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1071contigEcto-sp9_F_contig1071:1569..4031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog2880.D8LQX6
KEGG koko:K08869
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_001970.1
Exons2
Model size603
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1071.632.1prot_Ecto-sp9_F_contig1071.632.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1071 1569..3963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928291.206229-CDS-Ecto-sp9_F_contig1071:1568..16821622928291.206229-CDS-Ecto-sp9_F_contig1071:1568..1682Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 1569..1682 -
1692277823.6028802-CDS-Ecto-sp9_F_contig1071:1568..16821692277823.6028802-CDS-Ecto-sp9_F_contig1071:1568..1682Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 1569..1682 -
1622928291.2258477-CDS-Ecto-sp9_F_contig1071:3543..39631622928291.2258477-CDS-Ecto-sp9_F_contig1071:3543..3963Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 3544..3963 -
1692277823.6123338-CDS-Ecto-sp9_F_contig1071:3543..39631692277823.6123338-CDS-Ecto-sp9_F_contig1071:3543..3963Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1071 3544..3963 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928291.2450526-UTR-Ecto-sp9_F_contig1071:3963..40311622928291.2450526-UTR-Ecto-sp9_F_contig1071:3963..4031Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1071 3964..4031 -
1692277823.6200428-UTR-Ecto-sp9_F_contig1071:3963..40311692277823.6200428-UTR-Ecto-sp9_F_contig1071:3963..4031Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1071 3964..4031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1071.632.1

>prot_Ecto-sp9_F_contig1071.632.1 ID=prot_Ecto-sp9_F_contig1071.632.1|Name=mRNA_Ecto-sp9_F_contig1071.632.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp
MNKPGHVSTASYLPCSTQSASQPGRRRARSQLTKLPTTSSYLLLLLLLCH
RQREHLVHGLVSPSHGGVARRTFSRTSGVSGSSASTAGGSPRWDGRCPRP
KHGLKMTLTSPPPRTQQQQETETINGGTQSVREMSAQMSQMRKDLEENEE
AQAYMQALRGAGIRDYASAEGEMRLLEI
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mRNA from alignment at Ecto-sp9_F_contig1071:1569..4031-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1071.632.1 ID=mRNA_Ecto-sp9_F_contig1071.632.1|Name=mRNA_Ecto-sp9_F_contig1071.632.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2463bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1071:1569..4031- (Ectocarpus species9 EcSCA_722f female)
TCTGCAGCCTACGTTCTGGTTGTTGATCTTATATCAGCATATCCCGCCCT
ACGGGAAACAGCGCAGCCATGAATAAGCCTGGCCATGTAAGTACAGCTTC
CTATCTCCCATGTAGCACTCAATCTGCGAGCCAGCCAGGCCGGCGGAGGG
CCAGGAGTCAGCTCACGAAGCTTCCGACGACGTCGTCATATTTGCTGCTG
CTGCTGCTGCTGTGTCATCGCCAGCGCGAGCACCTGGTACATGGCCTCGT
GTCTCCTTCCCACGGTGGCGTAGCCAGGAGAACCTTCAGCAGGACCAGCG
GCGTGAGTGGAAGCTCCGCGTCTACCGCGGGAGGATCGCCGCGGTGGGAT
GGTAGGTGTCCCCGACCGAAACATGGGCTCAAGATGACGTTGACATCCCC
CCCTCCTCGGACACAGCAGCAGCAAGAGACCGAGACCATCAATGGCGGAA
CACAGTCAGTGCGGGAAATGAGCGCACAGATGAGCCAGGTGCGTAATCAG
GTCGGCTTGGGCCGGCCGGTCTGATGGAGACGTTTTCTGTTGGCCTGCTG
GCTGCTGCTGAGTTTGTGTGAATCGAGTTGTTCTGACTGTCAAACTGTCG
TTTAGTGCCGGTTGGCTTCATGAGTCACACACATGCGTACGTTGCTGCAC
GTCATATGCATACGCCCTCGTCACCGGCATGCTCAGGTTCGCAGGCAAAG
AGCAATATGGTTGTCCGCGGCGCCAGGCATGCAACACGCCTGGGTGTCCT
GCATTTCACGTTTTTGTTTTGGTTACTGGGCATATCCTAACTTTTACAGA
CAATGCCAAAAAGATTCTCACACCGAAAGCAGTACTGCTGCTACAGAGAG
ACGGACTGCTGTTCTCCGAGTCCGAGTGTCACCTCGTTATTTGAGAGGAA
AATACGACCTTTCGGGGGGGGGGGGGGGGGAGTTTATCCATGTGCGCAGG
GGAAGCAAAGGGGGGGGGGATGCTAGGGGAACGGGGAAAAAAAACTGTTC
CCCGCCCCTTNNNNNNNNNNCTCTATATCTCTTATCATAGCGAGCATCTA
GCGGCGGGGGGGGTGTGCGGGGCAGGGGGAGTCTATGCATGCGCGCGCGG
AGTGCACAGAGAGGCGCGATGCTACGTGAACGGCGAAAGCAAGCTGTTCT
CCGCCCCTTGATGCATATCACTGTTGTTTTCCGTTGGTACATGGTCGACC
ATGATGAAGCTATTTACTACTAATAAATAGACTACTGCTGATGTTGGGGG
GCTAGTAATTGAAACTACTTTCCAAATTGACGACGATATGTTTATACCTG
AGACGAGAACGCGGGCGGGGTACAACAGCAGCCCGGTCGTCCCGCAATTT
AATTAAAGGGGTGTTGTTGCGCCGTGGATCAACGCTGGATGATTCTTGGG
AGACCAAATACAGGCCGAATAACTGATGGAAGGACTACATGTCTGAAGAT
TATACTACTATGTAGGAGCAACGGTCACATACAAACCGCTACCTTACAGC
AGCAATAAGTCATTTTAAGTAGCGTGTGCCAACAGAGTTTACGGTCTGTG
TTACGCTCCGGTGTCAGCGTTTTCACGCTTGTTTTGTACGTTCTCTCATT
GATGGCTGCGGCATTCCTTGATGTCCAATGCACCATACTACAGTAATGTG
AGGAATTGGACGAATTACGGTACGGCGCCACAACTCGCCATGGTTTCCAT
TCAACCGTCTTTTCAGCCGCCAGGGGGGCTTTGAGGATGCCGACTACATG
TAGGCTAGGAGCTTTCACCCCGATCTATGAAACTTTGCCCAGGATATCCA
TGACACACGCACGTATGTTGATGGGTGAAACACGTTTGGTCATGCACTTC
ATGAGCAACTACTGTTGAGTACGAGGTGACCGTTTTGCCACCACTGCTGT
GAGGAAGGTGTTATTGAAGAGAATGAAGAGAGGCTCTCTTTCCACTCACG
ACGATAAATTTAGACCCGTTCTCTACAACGAGAACTACGGCAGATGCGTG
TGTGTTTTGTCCACCTTTGCAATACCAAACCAAACCCCGAGACAACTCCA
GCTTTTACCTCAAACTCTCAGGTTGTAGTCAGAGCTTGGAGTACCGCTCT
CTTCACTTCCCCTTCCCCGTACGGACTTGGACAAAAGTAGCCCTGAGCAG
GGTCTCACGAGGGCGTACCTTTGCCTGATGTTGAAGCCCTTTCCCCCAGC
AGAATAAGGGCCGGGGCTGTACACCATCGTACACTGAGAATCGCATTTGC
ACCACACCAACGAAAACACACAACAGACCCGTTCCCAATTTTCTGTATAG
AAGTATATTTATTTTCTCGCTACAACCGAACACCCGCGTTTCCCCTCAGA
TGAGAAAAGATCTCGAAGAGAATGAGGAGGCCCAGGCCTACATGCAGGCG
TTGCGGGGGGCGGGGATCAGGGACTACGCCTCCGCCGAAGGAGAGATGCG
TCTCCTGGAGATC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1071:1569..4031-

>mRNA_Ecto-sp9_F_contig1071.632.1 ID=mRNA_Ecto-sp9_F_contig1071.632.1|Name=mRNA_Ecto-sp9_F_contig1071.632.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1071:1569..4031- (Ectocarpus species9 EcSCA_722f female)
ATGAATAAGCCTGGCCATGTAAGTACAGCTTCCTATCTCCCATGTAGCAC
TCAATCTGCGAGCCAGCCAGGCCGGCGGAGGGCCAGGAGTCAGCTCACGA
AGCTTCCGACGACGTCGTCATATTTGCTGCTGCTGCTGCTGCTGTGTCAT
CGCCAGCGCGAGCACCTGGTACATGGCCTCGTGTCTCCTTCCCACGGTGG
CGTAGCCAGGAGAACCTTCAGCAGGACCAGCGGCGTGAGTGGAAGCTCCG
CGTCTACCGCGGGAGGATCGCCGCGGTGGGATGGTAGGTGTCCCCGACCG
AAACATGGGCTCAAGATGACGTTGACATCCCCCCCTCCTCGGACACAGCA
GCAGCAAGAGACCGAGACCATCAATGGCGGAACACAGTCAGTGCGGGAAA
TGAGCGCACAGATGAGCCAGATGAATAAGCCTGGCCATGTAAGTACAGCT
TCCTATCTCCCATGTAGCACTCAATCTGCGAGCCAGCCAGGCCGGCGGAG
GGCCAGGAGTCAGCTCACGAAGCTTCCGACGACGTCGTCATATTTGCTGC
TGCTGCTGCTGCTGTGTCATCGCCAGCGCGAGCACCTGGTACATGGCCTC
GTGTCTCCTTCCCACGGTGGCGTAGCCAGGAGAACCTTCAGCAGGACCAG
CGGCGTGAGTGGAAGCTCCGCGTCTACCGCGGGAGGATCGCCGCGGTGGG
ATGGTAGGTGTCCCCGACCGAAACATGGGCTCAAGATGACGTTGACATCC
CCCCCTCCTCGGACACAGCAGCAGCAAGAGACCGAGACCATCAATGGCGG
AACACAGTCAGTGCGGGAAATGAGCGCACAGATGAGCCAGATGAGAAAAG
ATCTCGAAGAGAATGAGGAGGCCCAGGCCTACATGCAGGCGTTGCGGGGG
GCGGGGATCAGGGACTACGCCTCCGCCGAAGGAGAGATGCGTCTCCTGGA
GATCATGAGAAAAGATCTCGAAGAGAATGAGGAGGCCCAGGCCTACATGC
AGGCGTTGCGGGGGGCGGGGATCAGGGACTACGCCTCCGCCGAAGGAGAG
ATGCGTCTCCTGGAGATC
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