mRNA_Ecto-sp9_F_contig10666.597.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10666.597.1
Unique NamemRNA_Ecto-sp9_F_contig10666.597.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10666.597.1 vs.
Match: BZIP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR79_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 6.300e-64
Identity = 137/177 (77.40%), Postives = 139/177 (78.53%), Query Frame = 1 
Query:    1 QFLQFQRAVAASPPTLAERDRLRRLSRVLAGLRVSTEACMADVHARAATLMEILTPSQTVRYLGWVARTAGYPGDSLTTPPSLTSLLAATA----------TAATXXXXXXXXXXXXXARRSGEGKGVHNSGERGEVFRLWHKRNENLSLEEMEWLVLWVRRTQSTRRQRQQQ*RRR 501
            QFLQFQRAVAASPPTLAERDRLRRLSRVLAGLR STEACMADVHARAATLMEILTPSQTVRYLGWVARTAG P D  TT PSLTSLLA  A          TAAT               RSG GKG+ NSGERGEV RLW KRNENL+LEEMEWLVLWVRRTQSTRRQRQQQ RRR
Sbjct:  499 QFLQFQRAVAASPPTLAERDRLRRLSRVLAGLRASTEACMADVHARAATLMEILTPSQTVRYLGWVARTAGDPADCPTTLPSLTSLLAGAADTCASTDTPSTAATAARPVPRSPPATL--RSGGGKGIDNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRRTQSTRRQRQQQSRRR 673
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10666.597.1 vs.
Match: BZIP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF78_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 2.950e-62
Identity = 134/175 (76.57%), Postives = 137/175 (78.29%), Query Frame = 1 
Query:    1 QFLQFQRAVAASPPTLAERDRLRRLSRVLAGLRVSTEACMADVHARAATLMEILTPSQTVRYLGWVARTAGYPGDSLTTPPSLTSLLAATATAA--TXXXXXXXXXXXXXAR----------RSGEGKGVHNSGERGEVFRLWHKRNENLSLEEMEWLVLWVRRTQSTRRQRQQQ 489
            QFLQ QRAVAASPPTLAERDRLRRLSRVLAGLR STEACMAD HARAATLMEILTPSQTVRYLGWVARTAG  GD+ T PPSLTSLLAATATA   T             AR          RSGEG+G  NSGERGEV RLW KRNENL+LEEMEWLVLWVRR QSTRRQRQQQ
Sbjct:  619 QFLQLQRAVAASPPTLAERDRLRRLSRVLAGLRASTEACMADAHARAATLMEILTPSQTVRYLGWVARTAGDHGDAPTAPPSLTSLLAATATATADTCATTDPPSVAATAARPVPRSPPATLRSGEGRGFDNSGERGEVLRLWRKRNENLTLEEMEWLVLWVRRMQSTRRQRQQQ 793
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10666.597.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
BZIP6.300e-6477.40domain-containing protein n=1 Tax=Ectocarpus silic... [more]
BZIP2.950e-6276.57domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10666contigEcto-sp9_F_contig10666:1456..4032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1811
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10666.597.1prot_Ecto-sp9_F_contig10666.597.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10666 2775..3915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928284.6255465-UTR-Ecto-sp9_F_contig10666:1455..27741622928284.6255465-UTR-Ecto-sp9_F_contig10666:1455..2774Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10666 1456..2774 -
1692277820.9245694-UTR-Ecto-sp9_F_contig10666:1455..27741692277820.9245694-UTR-Ecto-sp9_F_contig10666:1455..2774Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10666 1456..2774 -
1622928284.6827517-UTR-Ecto-sp9_F_contig10666:3915..40321622928284.6827517-UTR-Ecto-sp9_F_contig10666:3915..4032Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10666 3916..4032 -
1692277820.9611187-UTR-Ecto-sp9_F_contig10666:3915..40321692277820.9611187-UTR-Ecto-sp9_F_contig10666:3915..4032Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10666 3916..4032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928284.6397386-CDS-Ecto-sp9_F_contig10666:2774..28321622928284.6397386-CDS-Ecto-sp9_F_contig10666:2774..2832Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10666 2775..2832 -
1692277820.9319546-CDS-Ecto-sp9_F_contig10666:2774..28321692277820.9319546-CDS-Ecto-sp9_F_contig10666:2774..2832Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10666 2775..2832 -
1622928284.6550555-CDS-Ecto-sp9_F_contig10666:3156..34131622928284.6550555-CDS-Ecto-sp9_F_contig10666:3156..3413Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10666 3157..3413 -
1692277820.940399-CDS-Ecto-sp9_F_contig10666:3156..34131692277820.940399-CDS-Ecto-sp9_F_contig10666:3156..3413Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10666 3157..3413 -
1622928284.6692555-CDS-Ecto-sp9_F_contig10666:3855..39151622928284.6692555-CDS-Ecto-sp9_F_contig10666:3855..3915Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10666 3856..3915 -
1692277820.9488904-CDS-Ecto-sp9_F_contig10666:3855..39151692277820.9488904-CDS-Ecto-sp9_F_contig10666:3855..3915Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10666 3856..3915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10666.597.1

>prot_Ecto-sp9_F_contig10666.597.1 ID=prot_Ecto-sp9_F_contig10666.597.1|Name=mRNA_Ecto-sp9_F_contig10666.597.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=125bp
MADVHARAATLMEILTPSQTVRYLGWVARTAGYPGDSLTTPPSLTSLLAA
TATAATCAATDTPSTAATAARRSGEGKGVHNSGERGEVFRLWHKRNENLS
LEEMEWLVLWVRRTQSTRRQRQQQ*
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mRNA from alignment at Ecto-sp9_F_contig10666:1456..4032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10666.597.1 ID=mRNA_Ecto-sp9_F_contig10666.597.1|Name=mRNA_Ecto-sp9_F_contig10666.597.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2577bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10666:1456..4032- (Ectocarpus species9 EcSCA_722f female)
CAGTTTCTCCAGTTCCAGCGAGCGGTTGCGGCAAGCCCCCCTACGCTGGC
GGAGAGAGATCGACTCAGGAGGCTATCTCGAGTGCTGGCGGGGCTCAGGG
TTTCCACGGAGGCTTGCATGGCGGACGTACATGCCAGAGCGGCCACGCTG
ATGGAGATACTCACTCCCTCCCAGACGGTACGGTTGATTTTTTTCGTACG
CAAGCGCCCCCTTGTTGTGTATCGAGTCAGTTGTGCTCCCCGCCCTCCCT
ATCGGGGAGGGGGGGGCTGTGGGCTAGAAAAGTTAGTATTTTCTTGTGTA
CATAAAAAATAGAAAGAAAAGAAAAGTCCGGGTGTGTTTACCCCCTCCTG
TGTGACCCTGGATGGATGTAGTTGTACGAAAAACTACACTGAAGAGTGCA
GTACTCTACATTCCCTGAAAAGTGTAGTACACGTCTCACCACGATAAATG
GGGGGACTGTCGCCATAATAAAATAGGACGAAAACAAATCTGACGTTTTT
GATGGGTCGGTTTGGTGTTACGCAACTGACGCGTTGCTTGTGCACCGTAA
GGAAGCGAGCCCTTTTTCGCCAATGCACTGGGCCTCCTCCTGTCTCTGCG
TGTGGACACAACGACACAGGTGCGATATCTCGGCTGGGTGGCGAGAACAG
CGGGGTACCCCGGAGATTCTCTGACGACACCTCCTTCCCTCACCAGCCTC
TTGGCCGCTACCGCTACCGCTGCTACTTGTGCTGCCACCGATACTCCCTC
TACTGCCGCCACCGCCGCCCGACGCTCCGGGGAGGGGAAGGGTGTTCACA
ATAGCGGGGAGAGGGGAGAGGTGTTTCGGCTGTGGCACAAGCGAAACGAA
AATTTGTCGCTAGAGGAGATGGAGTGGTGAGTTCCTTGTGAACTACTTCG
TAGCTCTCTAGGGTGCGAGTCTGCCCCATGTCGTCGCGAAAAAAAGTCGA
CTCGCCGATGCTTTCTTAAAACTGGTCTTCGTGGTCAAGTTCTCTGGTTC
CGTTCTTCTTTTTGAGCCTGGGTTTCTTAGCTCCCAGGTTCTTGCAAGTG
GTGGCGCCTTGACCGTACATTAGCCGACGGGGATTGGGGAACGGTTTCAT
TTGAGAAAACGTTCATTCGTGAGACTACTTTGTGTGGAATAAACCGAAGA
ATCAAATCCCTCCCCTCCCGCCGCCCCCGCCCTGTTGTTTGTGCGCGCAG
GTTAGTGCTCTGGGTTAGGCGTACGCAAAGTACGCGGCGGCAGCGACAGC
AACAGTAACGAAGAAGATAATGCAGCGGCGGCGTCAGGGCTATTGGAAGC
GACATGAAAATTGGCCAATCAGAAAATTGCGTGCAGTGATATATGCATGT
GATTTGCAGTGCGTGCAAGCGATACTGCACTAGAAGGGAGGGTGCATACC
ATGCGGGATTTGTCGCTTGCTTGGGAGAAATAGTGGTAGCAATAAGAAAA
CAACGTTTGGAAACGGTTTCTGTCAATTCAGGTTTAGGCTGCGTGAGCTC
TGCAAACGCGGGAAATAATTGTCATCAGGTGGTGTAAATTTTTTTTGTGG
ATGTTCGTGTTGTTGTTGCAAATTACTACTGCTTGTTTCTTGAGAGACAG
CTGTGTTGTCTTGTGACAGCCAACTGCTCGCGGTGTTGTGTGGAAAACCC
CGCAGGGGTGGGTGACGGACAAAGTGTAAAAATGGTTGCTCATTGTCGTG
TTTGTCGCATGATAACCGTTGTTGTTCAGGTCGCGTCTGTCTCAGCTGTT
GAGACGAAACGTCATCGTACTCACTCACCACGTTTCACCACGTTTTTGAG
ACCATCTCTTCCGCCTCGGCGGAACACTGTCTCATTTTTTTTCCCACTCC
GTTTCGTCAAGTAGGGGGGGAGTTATTTCACTACAGCTATGAAGCAGCAG
GTCGCACGTGTTACCTATCCCATGTAAAACACGTCGCACCTGCGAAAACG
GCACCGAGCTCATGCGCCCAGGTCTCGCTGACCTGTCAGGCGTGTGGTAC
GGGCGGTGTGAATCTGACCGTAGCTCACACCATGCACTTCAATGTAGTGT
CGACACCAATGACCTGTAGAGAGTGTACTGATGCGGTACTCACGGGTGGG
GAACGTTACGTGATTTTACACGAGACGGGTTGCGCAGGTATTTAGTGCGG
AAACGCGCAGGAGGACCACCGTAGCACAATATTCGATTTGTTGGCCAGGA
CTCTTGGGCGTGCTCATGGCACTAACTAGTGTAATTTCTGTTTTGCCTCG
TGCTTGACTGTTGTCCGTGTCGCACGGTGCGAAAGCAGGCACTACGTACC
CTAGAAATAAATGGATGAGTGAACGTGTTGGCCAGGTTGTGTGGCTTTGA
AGCAAGATCGATGTTCCAGCAAGCAGCCCCGGCGTTCTGGTCCACATCGT
CTGGTCTGTTTGTTTGGTTGCCGAAGGGAGAACGAGACAAAAACTGGTCC
GAAAGTGAGATGGTCGGCTGTACTGTGCGGTTCGGCAATACCCTTCTCGA
AGGCAAGCACCACAGGGGGCCAGGGTGGAGAAAAAACAAAGGACGAAAAT
AACGGTGCGACTTCTCCCTCCTTTGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10666:1456..4032-

>mRNA_Ecto-sp9_F_contig10666.597.1 ID=mRNA_Ecto-sp9_F_contig10666.597.1|Name=mRNA_Ecto-sp9_F_contig10666.597.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10666:1456..4032- (Ectocarpus species9 EcSCA_722f female)
ATGGCGGACGTACATGCCAGAGCGGCCACGCTGATGGAGATACTCACTCC
CTCCCAGACGATGGCGGACGTACATGCCAGAGCGGCCACGCTGATGGAGA
TACTCACTCCCTCCCAGACGGTGCGATATCTCGGCTGGGTGGCGAGAACA
GCGGGGTACCCCGGAGATTCTCTGACGACACCTCCTTCCCTCACCAGCCT
CTTGGCCGCTACCGCTACCGCTGCTACTTGTGCTGCCACCGATACTCCCT
CTACTGCCGCCACCGCCGCCCGACGCTCCGGGGAGGGGAAGGGTGTTCAC
AATAGCGGGGAGAGGGGAGAGGTGTTTCGGCTGTGGCACAAGCGAAACGA
AAATTTGTCGCTAGAGGAGATGGAGTGGTGCGATATCTCGGCTGGGTGGC
GAGAACAGCGGGGTACCCCGGAGATTCTCTGACGACACCTCCTTCCCTCA
CCAGCCTCTTGGCCGCTACCGCTACCGCTGCTACTTGTGCTGCCACCGAT
ACTCCCTCTACTGCCGCCACCGCCGCCCGACGCTCCGGGGAGGGGAAGGG
TGTTCACAATAGCGGGGAGAGGGGAGAGGTGTTTCGGCTGTGGCACAAGC
GAAACGAAAATTTGTCGCTAGAGGAGATGGAGTGGTTAGTGCTCTGGGTT
AGGCGTACGCAAAGTACGCGGCGGCAGCGACAGCAACAGTAAGTTAGTGC
TCTGGGTTAGGCGTACGCAAAGTACGCGGCGGCAGCGACAGCAACAGTAA
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