mRNA_Ecto-sp9_F_contig10663.595.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10663.595.1
Unique NamemRNA_Ecto-sp9_F_contig10663.595.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10663.595.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.440e-11
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:    2 DMMVQTPYGMAAAYPPYTMSFQGVPYAPAQHGYP 103
            DMMVQT YGMAAAYPPYTMSFQGVPYAPAQ GYP
Sbjct:  616 DMMVQTHYGMAAAYPPYTMSFQGVPYAPAQQGYP 649
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10663.595.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.440e-1194.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10663contigEcto-sp9_F_contig10663:570..1048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10663.595.1prot_Ecto-sp9_F_contig10663.595.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10663 574..1048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928284.469516-UTR-Ecto-sp9_F_contig10663:569..5731622928284.469516-UTR-Ecto-sp9_F_contig10663:569..573Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10663 570..573 +
1692277820.8429499-UTR-Ecto-sp9_F_contig10663:569..5731692277820.8429499-UTR-Ecto-sp9_F_contig10663:569..573Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10663 570..573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928284.4827392-CDS-Ecto-sp9_F_contig10663:573..6721622928284.4827392-CDS-Ecto-sp9_F_contig10663:573..672Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10663 574..672 +
1692277820.8531356-CDS-Ecto-sp9_F_contig10663:573..6721692277820.8531356-CDS-Ecto-sp9_F_contig10663:573..672Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10663 574..672 +
1622928284.4937904-CDS-Ecto-sp9_F_contig10663:889..10481622928284.4937904-CDS-Ecto-sp9_F_contig10663:889..1048Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10663 890..1048 +
1692277820.8610682-CDS-Ecto-sp9_F_contig10663:889..10481692277820.8610682-CDS-Ecto-sp9_F_contig10663:889..1048Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10663 890..1048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10663.595.1

>prot_Ecto-sp9_F_contig10663.595.1 ID=prot_Ecto-sp9_F_contig10663.595.1|Name=mRNA_Ecto-sp9_F_contig10663.595.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=86bp
MMVQTPYGMAAAYPPYTMSFQGVPYAPAQHGYPMGYQQIYQGYTYPNAPV
LPGQQQQISAGGAQQQQQQAGGGHPSGPQPQAGGAP
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mRNA from alignment at Ecto-sp9_F_contig10663:570..1048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10663.595.1 ID=mRNA_Ecto-sp9_F_contig10663.595.1|Name=mRNA_Ecto-sp9_F_contig10663.595.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=479bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10663:570..1048+ (Ectocarpus species9 EcSCA_722f female)
CGACATGATGGTCCAGACGCCCTACGGCATGGCTGCTGCGTACCCCCCGT
ACACGATGTCATTCCAGGGGGTCCCGTACGCGCCGGCGCAGCATGGGTAC
CCGGTGAGTGAGGAGGGAATGCATGCAGTAAAAAGGAGTTGCCAGCTGTG
GTTGTAGCGTGGCGAGAACCGTCAGGTTAAAAACACTGAGACGATAGGCT
CCAACATGAAAACTTGACACATCGGGTTGGGGAGGCGTCCGTGGTTATCT
ATCCCATCTCGACTGACCCCCCCCCCCCACCCACCGGTTTCCCAACCCGC
GCACGAAAACTGGTCGCCAGATGGGATACCAGCAAATCTACCAGGGGTAC
ACCTACCCGAACGCCCCCGTACTCCCTGGACAGCAGCAGCAGATCTCCGC
CGGGGGGGCACAGCAGCAGCAGCAGCAGGCGGGAGGTGGTCACCCTAGCG
GGCCTCAGCCTCAGGCTGGTGGCGCCCCA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10663:570..1048+

>mRNA_Ecto-sp9_F_contig10663.595.1 ID=mRNA_Ecto-sp9_F_contig10663.595.1|Name=mRNA_Ecto-sp9_F_contig10663.595.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10663:570..1048+ (Ectocarpus species9 EcSCA_722f female)
ATGATGGTCCAGACGCCCTACGGCATGGCTGCTGCGTACCCCCCGTACAC
GATGTCATTCCAGGGGGTCCCGTACGCGCCGGCGCAGCATGGGTACCCGA
TGATGGTCCAGACGCCCTACGGCATGGCTGCTGCGTACCCCCCGTACACG
ATGTCATTCCAGGGGGTCCCGTACGCGCCGGCGCAGCATGGGTACCCGAT
GGGATACCAGCAAATCTACCAGGGGTACACCTACCCGAACGCCCCCGTAC
TCCCTGGACAGCAGCAGCAGATCTCCGCCGGGGGGGCACAGCAGCAGCAG
CAGCAGGCGGGAGGTGGTCACCCTAGCGGGCCTCAGCCTCAGGCTGGTGG
CGCCCCAATGGGATACCAGCAAATCTACCAGGGGTACACCTACCCGAACG
CCCCCGTACTCCCTGGACAGCAGCAGCAGATCTCCGCCGGGGGGGCACAG
CAGCAGCAGCAGCAGGCGGGAGGTGGTCACCCTAGCGGGCCTCAGCCTCA
GGCTGGTGGCGCCCCA
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