mRNA_Ecto-sp9_F_contig10660.593.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10660.593.1
Unique NamemRNA_Ecto-sp9_F_contig10660.593.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Ubiquitin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 3.920e-57
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV
Sbjct: 1573 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 1669
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Hypothetical (protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNC6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 6.410e-32
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G++CNQ+I  E  C H SER ED  VL LDVKGK+S+ ESL LYVEGE+L G+NK+ C  C+ KRD+LKR CI+ LPN L LHLKRFEFD+  MRKV
Sbjct: 2796 GEICNQIICQE--CKHQSERCEDCLVLSLDVKGKKSVLESLDLYVEGEMLDGENKYFCENCSGKRDSLKRACISTLPNTLILHLKRFEFDLEIMRKV 2890
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RGE2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.030e-31
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G LCNQ+I  E  C H SER+E+F V  L+VKGK SI +SL LYVEGE+L GDNK+LC +CNEKRD  KR C  +LP VL +HLKRFEFD+  +RK+
Sbjct: 1911 GVLCNQIICREG-CNHRSEREENFMVCQLEVKGKLSIKQSLDLYVEGELLEGDNKYLCGECNEKRDAQKRACFVKLPQVLIMHLKRFEFDLELLRKI 2006
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NWC5_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 1.430e-30
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G +CNQ+I  E  C HVSER E +F L LDVKGKRSI ESL  YV+GE+L GDNK+ C+QC++K D +KRTCI +LP+ L +H KRFEFD+  MR++
Sbjct: 1474 GTVCNQIISKE--CSHVSERDESYFTLSLDVKGKRSIYESLASYVQGELLEGDNKYHCSQCDKKVDAIKRTCIKKLPDNLIIHAKRFEFDLELMRRI 1568
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 34 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHV8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.960e-30
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G LCNQ++  E  C H SER+E+F V  L+VKGK+SI ESL LYVEGE+L GDNK+LC +CNEKRD  KR   A LPNV  +HLKRF+FD+  +RK+
Sbjct: 2756 GVLCNQILCKEG-CSHRSEREENFMVCQLEVKGKQSILESLDLYVEGEMLEGDNKYLCGECNEKRDAQKRAFFASLPNVFMIHLKRFDFDLELLRKI 2851
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ITW2_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 2.470e-30
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G +CNQ+I  E  C HVSERQE F+ L + VKGK S+ ESL+LYVEG++L GDNK+ C++C++K   LKR CI  LPN L +H+KRFEFD+ EMR++
Sbjct:  182 GTVCNQVISKE--CEHVSERQEPFYSLSVTVKGKSSLEESLELYVEGDMLEGDNKYQCSKCDKKVTALKRCCIESLPNTLIVHMKRFEFDLEEMRRM 276
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 120 bits (300), Expect = 1.720e-29
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G L NQ+I  +  C HVSER+E+FF L LD+K K+SI ESL LYVEG++L GDNKF C++CN K D LKR C+  LP+ L +HLKRFEFD+  M+++
Sbjct: 1512 GALSNQIISKD--CTHVSEREENFFTLSLDIKNKKSILESLALYVEGDMLEGDNKFHCSECNAKVDALKRCCVKNLPDNLIVHLKRFEFDLETMKRI 1606
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Uncharacterized (protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIC7_DIALT)

HSP 1 Score: 114 bits (285), Expect = 1.820e-27
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G+  NQ++G    C H SER E FF L LDVKGKRS+ ESL  +V+GE+L GDN++ C +C +  + LKR C+  LP  L LHLKRFEFD  +M+KV
Sbjct: 2039 GETVNQVLGRSDSCSHTSERDESFFALQLDVKGKRSVLESLDAFVQGEMLDGDNRYWCEECGKHVEALKRCCVKSLPRTLILHLKRFEFDYDQMKKV 2135
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GRS0_ACACA)

HSP 1 Score: 112 bits (279), Expect = 1.170e-26
Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G+L NQLI  E  C H SER E F+ L +++K K+ I ESL+L++ GE+L G+NK+ C  C + RDTLKR CIA+LP ++ LHLKRFEFD+ +MR V
Sbjct: 1679 GELSNQLIPKE--CTHRSERLEPFYSLSIEIKNKKDIEESLKLFIAGEMLQGENKYKCEICQKGRDTLKRCCIAKLPRIMMLHLKRFEFDLEKMRNV 1773
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BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PTV8_9FUNG)

HSP 1 Score: 112 bits (279), Expect = 1.170e-26
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVLAGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV 291
            G+L  Q+   +  C HVSER+E FF +  +VK K+++ ESLQLYVEGE+L GDNK+ CA+C++  D +KR+CI +LP+ L LHLKRF+FDM  M+++
Sbjct: 1784 GKLVQQVKSKD--CNHVSEREESFFAIQCEVKNKKNVAESLQLYVEGEILDGDNKYFCAKCSKHVDAIKRSCIKQLPDNLILHLKRFDFDMETMKRI 1878
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10660.593.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ubiquitin3.920e-57100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical6.410e-3263.92protein n=3 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical3.030e-3161.86protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
Ubiquitinyl1.430e-3059.79hydrolase 1 n=1 Tax=Planoprotostelium fungivorum T... [more]
Ubiquitin1.960e-3060.82carboxyl-terminal hydrolase 34 n=1 Tax=Hondaea fer... [more]
Ubiquitin2.470e-3057.73carboxyl-terminal hydrolase (Fragment) n=1 Tax=Van... [more]
Ubiquitinyl1.720e-2957.73hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. ... [more]
Uncharacterized1.820e-2753.61protein n=1 Tax=Diacronema lutheri TaxID=2081491 R... [more]
Ubiquitinyl1.170e-2654.64hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. ... [more]
Ubiquitinyl1.170e-2652.58hydrolase 1 n=1 Tax=Endogone sp. FLAS-F59071 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10660contigEcto-sp9_F_contig10660:3654..4271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue4.2e-49
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928284.3296714-CDS-Ecto-sp9_F_contig10660:3653..37971622928284.3296714-CDS-Ecto-sp9_F_contig10660:3653..3797Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10660 3654..3797 +
1692277820.8094406-CDS-Ecto-sp9_F_contig10660:3653..37971692277820.8094406-CDS-Ecto-sp9_F_contig10660:3653..3797Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10660 3654..3797 +
1622928284.3468592-CDS-Ecto-sp9_F_contig10660:4124..42711622928284.3468592-CDS-Ecto-sp9_F_contig10660:4124..4271Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10660 4125..4271 +
1692277820.8219917-CDS-Ecto-sp9_F_contig10660:4124..42711692277820.8219917-CDS-Ecto-sp9_F_contig10660:4124..4271Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10660 4125..4271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10660.593.1prot_Ecto-sp9_F_contig10660.593.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10660 3654..4271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10660.593.1

>prot_Ecto-sp9_F_contig10660.593.1 ID=prot_Ecto-sp9_F_contig10660.593.1|Name=mRNA_Ecto-sp9_F_contig10660.593.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=97bp
GQLCNQLIGAEAVCPHVSERQEDFFVLGLDVKGKRSITESLQLYVEGEVL
AGDNKFLCAQCNEKRDTLKRTCIARLPNVLFLHLKRFEFDMMEMRKV
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mRNA from alignment at Ecto-sp9_F_contig10660:3654..4271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10660.593.1 ID=mRNA_Ecto-sp9_F_contig10660.593.1|Name=mRNA_Ecto-sp9_F_contig10660.593.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10660:3654..4271+ (Ectocarpus species9 EcSCA_722f female)
GGCCAGCTCTGCAACCAGCTGATAGGCGCGGAGGCTGTCTGCCCCCACGT
GAGCGAGCGGCAGGAGGACTTCTTCGTCCTGGGTCTGGACGTGAAGGGCA
AGCGGTCCATCACCGAGAGCCTCCAGCTCTACGTCGAGGGGGAGGTATGC
TAAACGCTCGTTCTTATTTGTGATGTGCTTCCTCAATCTTGGTAGACTAT
TGTTTCTCTTCTTTTTTATCCTCTCATGTTTTTGTCTGTTTCTTTGCAAA
CATCAGCAGCAGCAGCAGCAGCAAGAACAACAGCTGTTACAGGAGGGCAA
CAAATGCCTAAAGCAGCGCCATCCGCCAACAAAATAACAATGACAGCAAC
GACAACAACACGAGCACTACATATAGAGTACAAGCCCCTTTTTTCACCCA
GCACAACGCATCTGAACCAGTGACAACGGCAATAGTATTAACGACGACGA
CGACGAACATGGCGCATCCAGGTGCTCGCGGGAGACAACAAGTTCCTCTG
CGCTCAGTGCAACGAGAAACGGGACACGCTCAAGCGCACGTGCATCGCCC
GCCTCCCTAACGTCCTCTTCCTGCACCTCAAGCGGTTCGAGTTCGACATG
ATGGAGATGAGAAAAGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10660:3654..4271+

>mRNA_Ecto-sp9_F_contig10660.593.1 ID=mRNA_Ecto-sp9_F_contig10660.593.1|Name=mRNA_Ecto-sp9_F_contig10660.593.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10660:3654..4271+ (Ectocarpus species9 EcSCA_722f female)
GGCCAGCTCTGCAACCAGCTGATAGGCGCGGAGGCTGTCTGCCCCCACGT
GAGCGAGCGGCAGGAGGACTTCTTCGTCCTGGGTCTGGACGTGAAGGGCA
AGCGGTCCATCACCGAGAGCCTCCAGCTCTACGTCGAGGGGGAGGGCCAG
CTCTGCAACCAGCTGATAGGCGCGGAGGCTGTCTGCCCCCACGTGAGCGA
GCGGCAGGAGGACTTCTTCGTCCTGGGTCTGGACGTGAAGGGCAAGCGGT
CCATCACCGAGAGCCTCCAGCTCTACGTCGAGGGGGAGGTGCTCGCGGGA
GACAACAAGTTCCTCTGCGCTCAGTGCAACGAGAAACGGGACACGCTCAA
GCGCACGTGCATCGCCCGCCTCCCTAACGTCCTCTTCCTGCACCTCAAGC
GGTTCGAGTTCGACATGATGGAGATGAGAAAAGTGGTGCTCGCGGGAGAC
AACAAGTTCCTCTGCGCTCAGTGCAACGAGAAACGGGACACGCTCAAGCG
CACGTGCATCGCCCGCCTCCCTAACGTCCTCTTCCTGCACCTCAAGCGGT
TCGAGTTCGACATGATGGAGATGAGAAAAGTG
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