mRNA_Ecto-sp9_F_contig10649.588.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P3_9PHAE) HSP 1 Score: 318 bits (816), Expect = 8.010e-103 Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 1
Query: 1 LEFFRATHAAFNKFGLDQSLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAPFSSAG 495
LEFFRATHAAFNKFGLDQSLALSMELLGETVK VATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWR YLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAPFSSAG
Sbjct: 172 LEFFRATHAAFNKFGLDQSLALSMELLGETVKVVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRTYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAPFSSAG 336
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX52_ECTSI) HSP 1 Score: 319 bits (818), Expect = 1.840e-101 Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 1
Query: 1 LEFFRATHAAFNKFGLDQSLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAPFSSAG 495
LEFFRATHAAFNK GLDQSLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAPFSSAG
Sbjct: 172 LEFFRATHAAFNKLGLDQSLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAPFSSAG 336
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXS9_9STRA) HSP 1 Score: 107 bits (266), Expect = 9.230e-24 Identity = 65/158 (41.14%), Postives = 92/158 (58.23%), Query Frame = 1
Query: 1 LEFFRATHAAFNKFGLDQSLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEA-WQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVL 471
LEF R H AF + G+ L +S+ L V ++ SD S+++ VVN+ +VLSWEF + W + L+RP WR YL+RPDFLGAVF VY +R A G L H+LRQLL+ LSS+ G +F + +Q+ AY F+++G +VL
Sbjct: 248 LEFHRLAHVAFEEKGILDLLKISINGLSGAVTKLS-----SDPSLVDASCGVVNLTIDVLSWEFGSLGGKWGRTGSSALVRPPESWREYLIRPDFLGAVFQVYTSIRNEAGAAVG-KLKHSLRQLLILLSSITGIVFLDKNQKNAYCGFMIDGCMSVL 399
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F075_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.370e-19 Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 1
Query: 1 LEFFRATHAAFNKFG-LDQSLALSMELLGETVKAVATPEALSDTSVL--ELVTTVVNVCAEVLSWEFKYVEAWQ---IPPAQ--QLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAPFSSAGE 498
LEF + HAA+ K G LD+SL +SM+ L + V + + S+ +L TVV + +V+ WEF AW P + L+RP WR+ L++P+F+ A+F V+ RV + T P L H++RQL+L L+S+ GDIF +++ +A+FL+EG +L S+ E
Sbjct: 249 LEFHKRAHAAYEKEGWLDRSLQMSMKALSQVVVMLNDNNSSSNLEKAKEDLALTVVQLTIDVIGWEFGS-NAWDSGGFPTSNGSALVRPPVAWRSVLIQPEFVKAIFLVHSRV-VHNTPSPSNDLGHSIRQLILLLASIFGDIFPTPEEQTTFAAFLLEGILHLLTTSTSAIAE 420
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDL1_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15 Identity = 53/119 (44.54%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 91 VKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAW---------QIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGT----LPHALRQLLLQLSSVHGDIF 408
V VA P+ L+ ++ +V++ E+LSWEF AW Q+ + LI+P WR YL+RPDFLGAV NVY VR GG L H LRQLLLQLSSV G IF
Sbjct: 11 VNNVALPDVLTRRAI-----AIVSLTIEILSWEFGGGSAWNAASFASSAQVSASLVLIKPPVEWRDYLIRPDFLGAVVNVYTYVRSCVANNLGGQKTVDLGHHLRQLLLQLSSVSGGIF 124
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANW3_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.510e-14 Identity = 55/163 (33.74%), Postives = 84/163 (51.53%), Query Frame = 1
Query: 31 FNKFGLDQSLALSMELLGETVKA-VATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGT------------LPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAP 480
F K GL+ SL ++ME LG+ + A + +A ++ +L + +C VL+W+ +++ + IP A RP WR+YLVRPD L A+F VY V + A P T + LRQ+L LS V G IFE+ +++ Y +L A + A P
Sbjct: 1 FEKEGLETSLHIAMEQLGQAIGAWESRAQAGTEMRLLARLKAAGELCLAVLNWDHGWLDTYSIPGATTSNRPPQSWRSYLVRPDLLQALFRVYRAVWV--CALPQCTNAQTSFWVLATDVAAMLRQILTALSGVTGKIFESTEEKGGYFQYLATSALHLSAEP 161
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RHZ0_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.290e-12 Identity = 54/187 (28.88%), Postives = 95/187 (50.80%), Query Frame = 1
Query: 1 LEFFRATHAAFNK---------FGLDQSLALSMELLG---ETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEF--KYVEAWQIPPAQQ----------LIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAAAVLAAPFSS 489
LEF R ++ AF GL +S+ ++M LG T ++ T + +EL T +V +VLSW+F + + W + L+RP W +++P+FL A+F++Y + P ++ HA+RQ+LLQLSS+ GDI+ + + + YA++ +EG ++L+ +S
Sbjct: 250 LEFHRNSYMAFEGGILEEAGEFVGLHESMKITMSALGLFCSTYNSLPTEKERG--KYVELGTNIVTTMTDVLSWDFGSQGLHHWDSSSSSVDNNKQSKYTILVRPPTSWSTMVLQPEFLSAMFHLY-------STNPKDSMAHAIRQVLLQLSSITGDIYTSMELKVGYATYFLEGVLSILSTLLTS 427
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W467_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.880e-9 Identity = 53/178 (29.78%), Postives = 86/178 (48.31%), Query Frame = 1
Query: 13 RATHAAFNKFGLDQSLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQ-----------IPPAQ-------QLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLR--GTAGPGG-TLPHALRQLLLQLSSVHGDIFENDDQRKAYASFLVEGAA-AVLAAP 480
R H +F GL S L+ +L E K P+ D E++++ + + L+W+F+ A I ++ ++I+PGP WR LV + + +F +Y R G G G + H +RQLL+ L SV+GDIFE+D+ R Y + L+ G+ V+A+P
Sbjct: 174 RKCHESFEMAGLRDSFMLASNVLFEMTKL---PQL--DQLAAEVISSSLALLEACLAWDFRCGSASSDASKTFRSESSIATSEHVTLKIDEIIKPGPSWRMVLVGGNLIQTLFQLYDGTRASSIGNTGSGAENVSHQIRQLLVFLGSVNGDIFESDEMRANYVNLLISGSLFGVVASP 346
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UGS7_HEMAN) HSP 1 Score: 54.3 bits (129), Expect = 1.800e-5 Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 229 QLIRPGPRWRAYLVRPDFLGAVFNVYHRVRLRGTAGPGGTLPHALRQLLLQLSSVHGDIFENDDQRKAY 435
++I PGP WR LV+P + + +Y R+ T L H++RQ L+ L+ + GD+F +D R+AY
Sbjct: 262 EIITPGPLWRDVLVQPSTIDLFYGLYQTARVHQT------LAHSVRQCLVDLAGIRGDVFPDDAARQAY 324 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10649.588.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10649.588.1 >prot_Ecto-sp9_F_contig10649.588.1 ID=prot_Ecto-sp9_F_contig10649.588.1|Name=mRNA_Ecto-sp9_F_contig10649.588.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=168bp LEFFRATHAAFNKFGLDQSLALSMELLGETVKAVATPEALSDTSVLELVTback to top mRNA from alignment at Ecto-sp9_F_contig10649:1227..2763- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10649.588.1 ID=mRNA_Ecto-sp9_F_contig10649.588.1|Name=mRNA_Ecto-sp9_F_contig10649.588.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1537bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10649:1227..2763- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10649:1227..2763- >mRNA_Ecto-sp9_F_contig10649.588.1 ID=mRNA_Ecto-sp9_F_contig10649.588.1|Name=mRNA_Ecto-sp9_F_contig10649.588.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10649:1227..2763- (Ectocarpus species9 EcSCA_722f female)back to top |