mRNA_Ecto-sp9_F_contig1064.581.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Similar (to 20S proteasome alpha5 subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM5_ECTSI) HSP 1 Score: 765 bits (1976), Expect = 8.000e-276 Identity = 403/424 (95.05%), Postives = 408/424 (96.23%), Query Frame = 2
Query: 32 MRFTFGVLLLISPGALRVRSVAHVRRKAPVREKKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGGGRGSGDGGGGERGVCSPGAEHGTTSASDHDNVGGGGDDGAISGPPFAGEGSSVSAAPPSMSXXXXXXXXXXXARSFVGRDSGSSGGGGVLEGGVEVGQEDGSSAASGVGRSSAAASFVPRCGYFRRVPKSEMDELLAGSTRGDGKESPTAANG 1303
MRFTFGVLLLISPGALRVRSVAHVRRKAPVREKKAYDTSVRAFSPDGSIYQVEYAV+AADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGG AMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGGGRGSGDGGGGERGVCSPGAEHG TSASDHDNVGGGGD GAISGPPFAGEGSSVSAAPPS+S R+FVGRDSGSSGGGGVLEGGVEVG+EDGSSAASGVGRSSAAASFVPR GYFRRVPKSEMDELLAGSTRGDG+ESPTAANG
Sbjct: 1 MRFTFGVLLLISPGALRVRSVAHVRRKAPVREKKAYDTSVRAFSPDGSIYQVEYAVEAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGPAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGGGRGSGDGGGGERGVCSPGAEHGATSASDHDNVGGGGD-GAISGPPFAGEGSSVSAAPPSLSGGGVNDGSASGVRNFVGRDSGSSGGGGVLEGGVEVGREDGSSAASGVGRSSAAASFVPRYGYFRRVPKSEMDELLAGSTRGDGEESPTAANG 423
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Proteasome (subunit alpha type n=8 Tax=Mandibulata TaxID=197563 RepID=E9HGR7_DAPPU) HSP 1 Score: 169 bits (429), Expect = 2.020e-45 Identity = 94/234 (40.17%), Postives = 142/234 (60.68%), Query Frame = 2
Query: 128 KKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
+ YD V FSP+G ++QVEYA++A G IG+QT +G+VLA R SPL++ +++ KI ++D + CA+SGL+ D R ++D AR Q H F +DE SVE+VA +S LA++F D DG A MSRP GVA+L AG+D P L+H+DPSG YVQ+ A+AIG A+ L+ + M+++ AM A L +L++V+ +++ S+ +E+ V
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRITSPLMEPTTIEKIVEIDK-HIGCAVSGLMADSRTMVDRARVEAQNHWFTYDEKMSVESVAQAVSNLAIQFGDSDDDGNA--------------MSRPFGVAILFAGIDE-KGPQLFHMDPSGTYVQYDAKAIGSGSEGAQQSLQEA-YNKSMTLKSAMKAALTILKQVM-EEKLSSTNVEVAAV 220
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Proteasome (subunit alpha type n=10 Tax=Lophotrochozoa TaxID=1206795 RepID=A0A6J8E1S9_MYTCO) HSP 1 Score: 169 bits (427), Expect = 3.810e-45 Identity = 94/234 (40.17%), Postives = 143/234 (61.11%), Query Frame = 2
Query: 128 KKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
+ YD V FSP+G ++QVEYA++A G IG+QT +G+VLA R SPL++A+S+ K+ ++DD + CAMSGL+ D R L+D AR Q H F ++E SVE+V +S +AL+F D D A MSRP GVALL AG+D+ P LYH+DPSG ++Q+ A+AIG A+ L+ V + M+++ A + L +L++V+ +++ ++ +EM V
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRVTSPLIEAASIEKVFEIDD-HIGCAMSGLIADSRTLIDRARVEAQNHWFTYNEKMSVESVTQSVSNVALQFGDDDADPGA--------------MSRPFGVALLFAGIDK-KGPQLYHMDPSGTFIQYDAKAIGSGSEGAQQALQDV-YHKSMTLKEACKSALTILKQVM-EEKLNSTNVEMAKV 220
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Proteasome (subunit alpha type n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7ST72_STRPU) HSP 1 Score: 168 bits (426), Expect = 5.310e-45 Identity = 94/234 (40.17%), Postives = 149/234 (63.68%), Query Frame = 2
Query: 128 KKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
+ YD V FSP+G ++QVEYA++A G IG++T++G+VLA R SPL++A+S+ KI ++D + CAMSGL+ D R ++D AR Q H F ++E SVE+V +S LAL+F D +AG+G AMSRP GVALL AG+D+ P+LYH+DPSG ++Q+ A+AIG A+++L+ V + ++++ A L VL++V+ +++ S+ +E+ +
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIRTNEGIVLAVEKRVTSPLMEATSIEKIVEIDS-HIGCAMSGLIADSRTMIDRARVEAQSHWFTYNEKMSVESVTQAVSNLALQFG----DDEAGSG----------AMSRPFGVALLFAGIDQ-KGPILYHMDPSGTFLQFDAKAIGSGSEGAQSQLQEVF-HKSLTLKEACKESLVVLKQVM-EEKLSSTNVEVATI 220
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Proteasome (subunit alpha type n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y5E9_GALSU) HSP 1 Score: 168 bits (426), Expect = 7.290e-45 Identity = 93/234 (39.74%), Postives = 144/234 (61.54%), Query Frame = 2
Query: 128 KKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
+ YD V FSP+G ++QVEYA++A G +G+QT +G+VLA R SPLL+ +SV K+ ++D+ + CAMSGL+ D R ++++AR Q HRF FDEA VE++ LAL+F G G ++ED + MSRP GV+LL+AGVD P L++ DPSG Y++W A+AIG A++ L+ ++ M+++ A L LREV+ +++ ++ +E+ V
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAMEAIKLGSTAVGIQTAEGVVLAVEKRLSSPLLEPNSVEKLVEIDE-HVGCAMSGLVADARTMIEHARVEAQNHRFTFDEAMPVESLTQATCDLALRF---------GEGVEDDEDKEEEMMSRPFGVSLLIAGVDN-KGPALFYTDPSGTYIRWLAKAIGAGAEGAQSALQEA-YYKSMTLKEAETLALRTLREVM-EEKVESNNVEVAAV 225
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Proteasome (subunit alpha type n=4 Tax=Cicadomorpha TaxID=33365 RepID=A0A1B6EX92_9HEMI) HSP 1 Score: 168 bits (426), Expect = 9.420e-45 Identity = 95/234 (40.60%), Postives = 145/234 (61.97%), Query Frame = 2
Query: 128 KKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
+ YD V FSP+G ++QVEYA++A G +G+ T +G+VLA R SPLL+ +++ KI +VD + CA+SGL+ D R L+D AR Q H F +DE SVE+VA +S LA++F D+DG A MSRP GVA+L AG+D P L+H+DPSG +VQ+ A+AIG A+ L+ V + M+++ A+ AVL +L++V+ +++ ++ +E+V V
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTALGICTSEGVVLAVEKRITSPLLELTTIEKIVEVDK-HIACAVSGLIADSRTLVDRARVECQNHWFIYDERMSVESVAQAVSNLAIQFGDSDEDGAA--------------MSRPFGVAILFAGIDE-KGPQLFHMDPSGTFVQFDAKAIGSGSEGAQQSLQEV-YHKSMTLKEAINAVLTILKQVM-EEKLNSTNVEVVTV 220
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Nucleophile (aminohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY71_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.420e-44 Identity = 100/252 (39.68%), Postives = 153/252 (60.71%), Query Frame = 2
Query: 80 RVRSVAHVRRKAPV-REKKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGV-GPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
RV +V+H R+ PV R ++ YD FSP+G++YQVEYA ++ +G L +G+ G++L A +++SPLL SV KI VD G + CA+SGL PDGRLL+ AR ++ H ++E PSV+++A+ LS + L FN Y +D EE + +RP+GV LL+AG D D P L L+P+G+ +W A+A+G AA+ L + G + + + A+ V+ + ++LGDD F TDRLE+ +
Sbjct: 27 RVLAVSHAIRQKPVSRTQRMYDMDAAVFSPEGNLYQVEYATKSVLRGSLAVGLVASDGVLLVATNQKQSPLLLPESVRKIVHVD-GTIACAVSGLQPDGRLLVKQARAYLAHHDRLYEEVPSVDSIAAHLSNVCLLFNNYPEDPN------EER----KMHARPLGVGLLLAGWDD-DGPALLFLNPAGSQGRWHAKAMGRDSEAADKLLRSLLGTRDMLHLETALPKVVKIFHDLLGDD-FCTDRLEVTLL 265
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Proteasome (subunit alpha type n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JUL7_BUGNE) HSP 1 Score: 167 bits (422), Expect = 2.000e-44 Identity = 96/234 (41.03%), Postives = 142/234 (60.68%), Query Frame = 2
Query: 128 KKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
+ YD V FSP+G ++QVEYA++A G IG+QT +G+VLA R SPL++A S+ KI +VD + CAMSGL+ D R L+D AR Q H F +DE SVE+V +S LAL F D D + G AMSRP GVALL AG+D + P L+HLDPSG ++++ A+AIG A+ L+ V + M++ A+ V+ +L++V+ +++ ++ +E+ V
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLQTSEGVVLAVEKRVTSPLIEADSIEKIFEVDS-HLGCAMSGLIADSRTLIDRARVEAQNHWFTYDEKMSVESVTQSVSNLALAFG--DDDAEPG------------AMSRPFGVALLFAGIDE-NGPQLFHLDPSGTFIRYDAKAIGSASEGAQQSLQDVF-HKSMNLETAIKEVMKILKQVM-EEKLTSKNVELAIV 220
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Proteasome (subunit alpha type n=3 Tax=Ciona TaxID=7718 RepID=F6Z491_CIOIN) HSP 1 Score: 166 bits (421), Expect = 2.870e-44 Identity = 94/234 (40.17%), Postives = 137/234 (58.55%), Query Frame = 2
Query: 128 KKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
+ YD V FSP+G ++QVEYA++A G IG+QT G+VLA R SPL++ASS+ K+ ++D + CAMSGL+ D + ++D AR Q H F FDE V+++ +S LAL+F EED AMSRP GVALL AG D G P LYHLDPSG +V A+AIG A+ LE + M++ A ++L +L++V+ +++ ++ +E+ V
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTADGVVLAVEKRITSPLIEASSIEKVFEIDT-HVGCAMSGLIADSKTMIDRARVEAQNHWFTFDEKMRVQSITKAVSNLALQFG--------------EEDSEPGAMSRPFGVALLFAGYDEGLGPQLYHLDPSGTFVSCSAKAIGSASEGAQTSLEEQF-HKSMTIEEAQKSILTILKQVM-EEKLTSTNVEVATV 221
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Match: Proteasome (subunit alpha type n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLH8_PORUM) HSP 1 Score: 166 bits (421), Expect = 3.130e-44 Identity = 95/234 (40.60%), Postives = 133/234 (56.84%), Query Frame = 2
Query: 128 KKAYDTSVRAFSPDGSIYQVEYAVQAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGQAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCV 829
+ YD V FSP+G ++QVEYA++A G +G+ T +G++LA R SPLL SS+ K+ ++D + AMSGL D R L+D+ R QEHRF +DE SVE+ L LAL+F G + D G AM+RP GVALL+AGVD P LYH DPSG YV+W A+AIG A+ L+ GM++ A L L+ V+ +++ S + +E+ V
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGICTTEGVILAVEKRLTSPLLTPSSIEKVLEIDT-HIGAAMSGLTADARTLIDHGRIVTQEHRFTYDEPLSVESTTQSLCDLALRF------------GEDGRDDGADAMARPFGVALLIAGVDDEGGPALYHTDPSGTYVKWMAKAIGAGSEGAQTALQEAWSA-GMTLAEAEGLALKTLKAVM-EEKVSGENVEVAAV 223 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1064.581.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1064.581.1 >prot_Ecto-sp9_F_contig1064.581.1 ID=prot_Ecto-sp9_F_contig1064.581.1|Name=mRNA_Ecto-sp9_F_contig1064.581.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=430bp MRFTAMRFTFGVLLLISPGALRVRSVAHVRRKAPVREKKAYDTSVRAFSPback to top mRNA from alignment at Ecto-sp9_F_contig1064:9490..14119+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1064.581.1 ID=mRNA_Ecto-sp9_F_contig1064.581.1|Name=mRNA_Ecto-sp9_F_contig1064.581.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1064:9490..14119+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1064:9490..14119+ >mRNA_Ecto-sp9_F_contig1064.581.1 ID=mRNA_Ecto-sp9_F_contig1064.581.1|Name=mRNA_Ecto-sp9_F_contig1064.581.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2580bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1064:9490..14119+ (Ectocarpus species9 EcSCA_722f female)back to top |