mRNA_Ecto-sp9_F_contig10635.578.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Protein (translocase subunit SecA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR85_ECTSI) HSP 1 Score: 391 bits (1004), Expect = 1.150e-127 Identity = 197/203 (97.04%), Postives = 199/203 (98.03%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRGKEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVS 612
QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVT+DGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVR EVLIVDTFSGRVLEGRRYSDGLHQ IEAKEG +VS
Sbjct: 177 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTQDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRDTEVLIVDTFSGRVLEGRRYSDGLHQSIEAKEGITVS 379
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Chloroplast (protein-transporting ATPase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ4_9PHAE) HSP 1 Score: 320 bits (819), Expect = 5.090e-106 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDK 486
QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDG VQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDK
Sbjct: 238 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGKVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDK 398
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Protein (translocase subunit SecA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ09_9STRA) HSP 1 Score: 289 bits (739), Expect = 3.600e-88 Identity = 139/203 (68.47%), Postives = 168/203 (82.76%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRGKEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVS 612
QVHRFLGL+VGL+Q+ M A R+ AY+CDVTY TNQELGFDYLRD+L V++ G Q K F +CLVDEADSILIDEARTPLIIS+ V AP QKFA + KI+ +L+KG+HY V EKEQ V++TD+G+ D ++LGKSMFD D WAP+IINS+KAKE+F +DKEYIV+ +V IVD+FSGRVLEGRRYSDGLHQ +EAKEG VS
Sbjct: 226 QVHRFLGLTVGLVQAEMDTAARRAAYACDVTYVTNQELGFDYLRDNLAVSEAGVAQVKPFHYCLVDEADSILIDEARTPLIISKQVPAPKQKFALAAKISGILKKGMHYDVKEKEQMVIMTDRGFADTQKMLGKSMFDAADAWAPYIINSLKAKELFAKDKEYIVKDGQVQIVDSFSGRVLEGRRYSDGLHQSLEAKEGLEVS 428
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Protein (translocase subunit SecA n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYL7_9STRA) HSP 1 Score: 266 bits (680), Expect = 7.650e-80 Identity = 130/206 (63.11%), Postives = 163/206 (79.13%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTV---QTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRGKEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVS 612
QVHRFLGLSVGLIQ+ M +R+EAY+CDVTY TN ELGFDYLRD+L +T+D TV + + FCLVDEADSILIDEARTPLIIS+ ++AP K+ ++K+ L+ GVHY V EK Q+VVLTD+G DC+++LGKS+FD +DPW F+ N +KAKE+ TRDK+YIVRG+++ IVD FSGRVLEGR+YSDGL Q I+ KEG S
Sbjct: 242 QVHRFLGLSVGLIQTGMTYPERREAYACDVTYVTNVELGFDYLRDNLALTEDETVLRARPLERAFCLVDEADSILIDEARTPLIISKQINAPQPKYGAAKKLVDFLKPGVHYEVDEKAQNVVLTDQGVKDCEKVLGKSLFDLQDPWMSFVTNGLKAKELLTRDKDYIVRGQDIAIVDRFSGRVLEGRKYSDGLQQSIQIKEGLPCS 447
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Protein (translocase subunit SecA n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I7Z8_GUITC) HSP 1 Score: 263 bits (671), Expect = 1.580e-78 Identity = 125/204 (61.27%), Postives = 161/204 (78.92%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILG-KSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRGKEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVS 612
Q+HRFLGL+VGLIQ+ M +R+ Y CD+TY TN ELGFDYLRD+L + + V T+ F FC+VDEADSI+IDEARTPLIIS APA K+A S KIA+VLE+ VHYTV EK QSV LT++G+ D ++IL K +F+P+DPW+P+IIN++KAK +F +D +Y+VR EV+IVD F+GRVLEGRR+S+GLHQ +EAKEG S
Sbjct: 216 QIHRFLGLTVGLIQAEMKPEERRANYGCDITYVTNSELGFDYLRDNLAIKPEDIVLTRPFNFCIVDEADSIMIDEARTPLIISEKTAAPAAKYANSAKIATVLEEKVHYTVDEKSQSVTLTERGFSDVEKILNVKDLFNPKDPWSPYIINALKAKSLFKKDVQYVVRANEVMIVDEFTGRVLEGRRWSNGLHQSVEAKEGLKPS 419
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Protein (translocase subunit SecA n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Q6_HETAK) HSP 1 Score: 259 bits (663), Expect = 1.390e-77 Identity = 129/203 (63.55%), Postives = 151/203 (74.38%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILGKSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRGKEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVS 612
QVHRFLGLSVGL+Q QR+ AY+CDVTY TN ELGFDYLRD+L +T VQ + F FCLVDEADSILIDEARTPLIIS VD P KF S KI +VL+K HY V EK Q+V T++G DC IL K +FDP DPWA ++ N+VKAKE+F EYIVR EV IVD FSGRVLEGRR++DGLHQ +EAKEG +++
Sbjct: 215 QVHRFLGLSVGLVQGPSTPEQRRAAYACDVTYLTNAELGFDYLRDNLAMTPGEVVQGRPFNFCLVDEADSILIDEARTPLIISEQVDGPKVKFENSAKIVNVLQKDYHYVVDEKGQTVQFTEEGMTDCANILKKDLFDPNDPWAAYLQNAVKAKELFAAGNEYIVRDGEVAIVDQFSGRVLEGRRFADGLHQALEAKEGLAIT 417
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Protein (translocase subunit SecA n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PR52_HEMAN) HSP 1 Score: 253 bits (645), Expect = 1.460e-75 Identity = 120/204 (58.82%), Postives = 160/204 (78.43%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILG-KSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRGKEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVS 612
Q+H+FLGL+VGLIQ+ +R+ Y CD+TY TN ELGFD+LRD+L +T D V + C+VDEADSI+IDEARTPLIIS +AP K+A S KIA+VLE+ VHYTV EK QSVVLT++G+ D ++IL + +F+P+DPW+P+IIN++KAK +F R+ +Y+ +G E+LIVD F+GRVLEGRR+S+GLHQ +EAKEG S S
Sbjct: 86 QIHKFLGLTVGLIQAGQKPDERRRNYECDITYVTNSELGFDFLRDNLAMTPDEMVLGRPLNMCIVDEADSIMIDEARTPLIISEKTEAPVAKYANSAKIAAVLEEKVHYTVDEKSQSVVLTERGFGDVEKILNVEDLFNPKDPWSPYIINALKAKSLFKREVQYVKKGNEILIVDEFTGRVLEGRRWSNGLHQSVEAKEGISPS 289
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Chloroplast (protein-transporting ATPase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453EU11_AEGTS) HSP 1 Score: 241 bits (615), Expect = 1.700e-75 Identity = 117/205 (57.07%), Postives = 154/205 (75.12%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILG-KSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRGKEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVSH 615
QV RFLGL VGLIQ M QR+E Y CD+TY TN ELGFDYLRD+L +T D V ++F +C++DE DSILIDEARTPLIIS + P+ ++ + KIA E+ +HYTV EK+++V+LT++GY D + IL ++DPR+ WA +++N++KAKE+F RD YIVR KEVLIVD F+GRV+ GRR+SDGLHQ IEAKEG + +
Sbjct: 129 QVPRFLGLQVGLIQQNMTPEQRRENYLCDITYVTNSELGFDYLRDNLAMTVDELV-LRNFNYCVIDEVDSILIDEARTPLIISGLAEKPSDRYYKAAKIAEAFEQDIHYTVDEKQRNVLLTEQGYADAEEILDIDDLYDPREQWASYVLNAIKAKELFLRDVNYIVRSKEVLIVDEFTGRVMAGRRWSDGLHQAIEAKEGVQIQN 332
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Protein (translocase subunit SecA n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P7X5_PORUM) HSP 1 Score: 254 bits (649), Expect = 3.240e-75 Identity = 122/205 (59.51%), Postives = 163/205 (79.51%), Query Frame = 1
Query: 7 VHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILG-KSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRG-KEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVSH 615
+H LGLSVGL+Q+ A+R+ AY+CDVTY TN ELGFDYLRD+L +T + V + F++CLVDEADS+LIDEARTPLIIS SV APA K+A + K+A+ L GVHYT + KEQSV++TD+GY+D ++ LG + +F+P DPWAP++IN++KAKE+F RD Y+VR KEV+I+D F+GR +EGRR+SDGLHQ +EA EG V++
Sbjct: 243 IHAALGLSVGLVQAGDSPAERRAAYACDVTYVTNSELGFDYLRDNLALTAEEIVLERPFYYCLVDEADSVLIDEARTPLIISESVAAPAGKYAAAAKVAAALTIGVHYTANIKEQSVLMTDRGYEDIEKALGIEDLFNPADPWAPYLINALKAKELFKRDTNYLVRDDKEVVIIDEFTGRAMEGRRWSDGLHQAVEAAEGIQVAN 447
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Match: Chloroplast (protein-transporting ATPase n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0V242_ORYSJ) HSP 1 Score: 243 bits (620), Expect = 3.750e-75 Identity = 118/205 (57.56%), Postives = 155/205 (75.61%), Query Frame = 1
Query: 4 QVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVTKDGTVQTKDFFFCLVDEADSILIDEARTPLIISRSVDAPAQKFATSQKIASVLEKGVHYTVSEKEQSVVLTDKGYDDCDRILG-KSMFDPRDPWAPFIINSVKAKEIFTRDKEYIVRGKEVLIVDTFSGRVLEGRRYSDGLHQCIEAKEGQSVSH 615
QV RFLGL VGLIQ M QR+E Y CD+TY TN ELGFDYLRD+L +T D V ++F +C++DE DSILIDEARTPLIIS + P+ ++ + KIA V E+ +HYTV EK+++V+LT++GY D + IL ++DPR+ WA +++N++KAKE+F RD YIVR KEVLIVD F+GRV+ GRR+SDGLHQ IEAKEG + +
Sbjct: 221 QVPRFLGLQVGLIQQNMTPEQRRENYLCDITYVTNSELGFDYLRDNLAMTVDELV-LRNFNYCVIDEVDSILIDEARTPLIISGLAEKPSDRYYKAAKIAEVFERDIHYTVDEKQRNVLLTEEGYADAEEILDINDLYDPREQWASYVLNAIKAKELFLRDVNYIVRSKEVLIVDEFTGRVMPGRRWSDGLHQAIEAKEGVPIQN 424 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10635.578.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10635.578.1 >prot_Ecto-sp9_F_contig10635.578.1 ID=prot_Ecto-sp9_F_contig10635.578.1|Name=mRNA_Ecto-sp9_F_contig10635.578.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=210bp MQVHRFLGLSVGLIQSTMPEAQRKEAYSCDVTYATNQELGFDYLRDHLTVback to top mRNA from alignment at Ecto-sp9_F_contig10635:731..3379+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10635.578.1 ID=mRNA_Ecto-sp9_F_contig10635.578.1|Name=mRNA_Ecto-sp9_F_contig10635.578.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2649bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10635:731..3379+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10635:731..3379+ >mRNA_Ecto-sp9_F_contig10635.578.1 ID=mRNA_Ecto-sp9_F_contig10635.578.1|Name=mRNA_Ecto-sp9_F_contig10635.578.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10635:731..3379+ (Ectocarpus species9 EcSCA_722f female)back to top |