mRNA_Ecto-sp9_F_contig10634.577.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: EsV-1-163 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 417 bits (1073), Expect = 2.620e-141 Identity = 208/222 (93.69%), Postives = 210/222 (94.59%), Query Frame = 1
Query: 1 QAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDAYRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVVASTSSSDAAADAAGAAGLWVDSATSLPLPKVSLP 666
+AECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSD YRCSDDFYLMSSADAPA GEDGGPTIEVVAPTAD LAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKAL EDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIP DSEDGMYKIRVGLFGDDTIYACSPSFEVVA AAADAAGAAGLWVDSATSL LP+VSLP
Sbjct: 72 EAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVA------AAADAAGAAGLWVDSATSLSLPEVSLP 287
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 301 bits (772), Expect = 4.520e-96 Identity = 149/211 (70.62%), Postives = 176/211 (83.41%), Query Frame = 1
Query: 7 ECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDAYRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVVASTSSSDAAADAAGAAGLWVDSATS 639
+CGFW+ANVC E D + CM Q DQSSQVTFPEP+ G SN GYR+RI+EVG+D +RCS+DFYL++SAD GE GGPT+EVVAP A+ LA+AGE YTVEFDYDNGFGEQLGRFKIDLYKA +G GDCG+WVTSVCDKPD+GC DS+GDY+VVIPADSE+GMYKIRVGLFGDD+IYACSPSFE+ T+++ A G GLW+DS +S
Sbjct: 74 DCGFWIANVCNEADDA-CMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKA---EGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEI---TTTNPGVLAAGG--GLWMDSTSS 275
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 270 bits (689), Expect = 7.110e-84 Identity = 128/189 (67.72%), Postives = 154/189 (81.48%), Query Frame = 1
Query: 7 ECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDAYRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVVAST 573
ECGFW+ N+CAEGD + CM+Q D SQVT PEP+ G SN GYR+RI +VG++ +RCSD+FYLMSSADA + GPT+EVVAP++ LA+AG +YTVEFDYDNGFG Q GRFKIDLY A +G GDCG WV+SVCDKPDVGC D++GDY++VIP DSE GMYKIRVGLFGDD+++ACS SFEVV T
Sbjct: 74 ECGFWVTNLCAEGDDA-CMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHA---EGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPET 255
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 203 bits (517), Expect = 4.300e-58 Identity = 99/196 (50.51%), Postives = 134/196 (68.37%), Query Frame = 1
Query: 1 QAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSD-AYRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVVASTSSSD 585
+ ECG W+ +C G+ GC + + PEP+ G S GY++R+A+V D + CSD+FYLM+ A+AP+AG+ GGP + V +P++ D A AGE YTVEFDYDNG G +GRF IDLY A G+GDCGT++ ++CDKP +GC DS GDY+V IP D+E GMY IRVG F DD++Y CS FE++ + S D
Sbjct: 51 EDECGDWVTALCPYGE-DGCPDN-EGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAT---GSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPD 241
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: EsV-1-163 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 196 bits (497), Expect = 2.110e-55 Identity = 97/189 (51.32%), Postives = 125/189 (66.14%), Query Frame = 1
Query: 1 QAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS-DAYRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVV 564
+ CG W+ +C G+ GC + + PEP+ G SN GY++R+ +V D+ CSD FYLM+S DAP AG + G + V +P D A AGE YTVEFDYDNG G ++ RF IDLY A DG GDCGT+VTS+CDKP +GC DS GDY+V IPAD+E G YKIRVG F D+ +Y CS +F ++
Sbjct: 62 EDSCGDWVTALCPYGE-EGCPDN-EGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMA---DGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: Imm (upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 185 bits (469), Expect = 2.360e-51 Identity = 98/196 (50.00%), Postives = 130/196 (66.33%), Query Frame = 1
Query: 1 QAECGFWLANVCAEGDGSGCM-SQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDA-YRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVVASTSSS 582
+ ECG W+ +C GD GC +Q D V PEP+ G S+ GY++ + + ++ Y CS DF L++S +AP A D G + V +P+ D A+AG YTVEFDYDNG G + RF IDLY + G+GDCGT+VT++CDKP +GC DSQGDY+VVIP+ +E GMY IRVG+F DD +Y CS SFE+V S S
Sbjct: 62 EDECGDWVTALCPYGD-DGCPDTQGDYD--VVMPEPMDGTSS-GYKVMVTDSSDESDYGCSGDFTLIASTEAPDA-TDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSS---GGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGESMS 249
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 191 bits (484), Expect = 7.250e-51 Identity = 97/193 (50.26%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 1 QAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEV-GSDAYRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVVASTS 576
+ ECG W+ +C G GC + + PEP+ G S GY++R+A+V G CSD+FYLM+SA+AP G P + V +P+A D A AG YTVEFDYDNG G ++ RFKIDLY G GDCGTWV ++CDK +GC DS GDY+V IP DGMY IRVG F DD +Y CS FE+V S+S
Sbjct: 13 EDECGEWVTALCPYGS-EGCPDN-EGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSI---GGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSS 200
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI53_ECTSI) HSP 1 Score: 176 bits (446), Expect = 2.310e-47 Identity = 87/162 (53.70%), Postives = 109/162 (67.28%), Query Frame = 1
Query: 94 FPEPLGGRSNEGYRIRIAEV-GSDAYRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVVASTS 576
PEP+ G S GY++R+A+V G CSD+FYL++SA+AP G P + V +P+ D+A AG YTVEFDYDNG G ++ RFKIDLY G GDCGTWV ++CDK +GC DS GDY+V IP DGMY IRVG F DD +Y CS FE+V S+S
Sbjct: 1 MPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLIASAEAPVVGGPDAPYLIVTSPSTGDMAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSI---GGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPDTVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSS 159
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: GPI-anchored (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 173 bits (438), Expect = 8.240e-47 Identity = 93/186 (50.00%), Postives = 124/186 (66.67%), Query Frame = 1
Query: 10 CGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRI--AEVGSDAYRCSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEV 561
CG W+ +C G GC A + PEP+ G S+ GY++ + AE SD CSDDF L++S DAP AGE G ++ V +P+ D A+AGE+YTVE+DY+NGFG RF +DLY G GDCGT+VT++CD+P +GC DSQGDY+V IP+D+ GMY IRVG+F D+ +Y CS +FEV
Sbjct: 65 CGDWVTALCPYG-ADGCPDSAGDYD-IIMPEPMSGTSS-GYKVMVKNAEDESDM-GCSDDFTLIASEDAPEAGE-MGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLV---GGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE) HSP 1 Score: 170 bits (430), Expect = 2.000e-46 Identity = 89/190 (46.84%), Postives = 127/190 (66.84%), Query Frame = 1
Query: 1 QAECGFWLANVCAEGDGSGCM-SQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDAYR-CSDDFYLMSSADAPAAGEDGGPTIEVVAPTADDLAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALAEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPADSEDGMYKIRVGLFGDDTIYACSPSFEVV 564
+ +CG W+ +C G GC +Q D + PEP+ G S+ GY+I + + ++ CS DF L++S DAPAAGE G ++ V +P+ D+A+AGE+YTVE+DY+NG G RF IDLY G GDCGT+V ++CDKP +GC DSQGDY+V IP+D+ GMY +RVG+F D+ ++ CS +FE+V
Sbjct: 2 EDDCGDWVTALCPYG-ADGCPDTQGDYD--IVMPEPMDGTSS-GYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGE-VGYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLY--TYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIV 184 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10634.577.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10634.577.1 >prot_Ecto-sp9_F_contig10634.577.1 ID=prot_Ecto-sp9_F_contig10634.577.1|Name=mRNA_Ecto-sp9_F_contig10634.577.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=203bp MSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDAYRCSDDFYLMSSADAback to top mRNA from alignment at Ecto-sp9_F_contig10634:1974..4306- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10634.577.1 ID=mRNA_Ecto-sp9_F_contig10634.577.1|Name=mRNA_Ecto-sp9_F_contig10634.577.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2333bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10634:1974..4306- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10634:1974..4306- >mRNA_Ecto-sp9_F_contig10634.577.1 ID=mRNA_Ecto-sp9_F_contig10634.577.1|Name=mRNA_Ecto-sp9_F_contig10634.577.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10634:1974..4306- (Ectocarpus species9 EcSCA_722f female)back to top |