mRNA_Ecto-sp9_F_contig10633.575.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10633.575.1
Unique NamemRNA_Ecto-sp9_F_contig10633.575.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10633.575.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10633contigEcto-sp9_F_contig10633:3319..3647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size157
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10633.575.1prot_Ecto-sp9_F_contig10633.575.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10633 3325..3643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928282.0239706-UTR-Ecto-sp9_F_contig10633:3318..33241622928282.0239706-UTR-Ecto-sp9_F_contig10633:3318..3324Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10633 3319..3324 -
1692277819.8063438-UTR-Ecto-sp9_F_contig10633:3318..33241692277819.8063438-UTR-Ecto-sp9_F_contig10633:3318..3324Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10633 3319..3324 -
1622928282.0608783-UTR-Ecto-sp9_F_contig10633:3643..36471622928282.0608783-UTR-Ecto-sp9_F_contig10633:3643..3647Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10633 3644..3647 -
1692277819.8323915-UTR-Ecto-sp9_F_contig10633:3643..36471692277819.8323915-UTR-Ecto-sp9_F_contig10633:3643..3647Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10633 3644..3647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928282.038853-CDS-Ecto-sp9_F_contig10633:3324..33961622928282.038853-CDS-Ecto-sp9_F_contig10633:3324..3396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10633 3325..3396 -
1692277819.8144782-CDS-Ecto-sp9_F_contig10633:3324..33961692277819.8144782-CDS-Ecto-sp9_F_contig10633:3324..3396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10633 3325..3396 -
1622928282.0501542-CDS-Ecto-sp9_F_contig10633:3568..36431622928282.0501542-CDS-Ecto-sp9_F_contig10633:3568..3643Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10633 3569..3643 -
1692277819.8232126-CDS-Ecto-sp9_F_contig10633:3568..36431692277819.8232126-CDS-Ecto-sp9_F_contig10633:3568..3643Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10633 3569..3643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10633.575.1

>prot_Ecto-sp9_F_contig10633.575.1 ID=prot_Ecto-sp9_F_contig10633.575.1|Name=mRNA_Ecto-sp9_F_contig10633.575.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=49bp
MCRDFSAWIDADFRAVGCPPKNGYLEKGFGRAAGGAGSSWGSPVTLIP*
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mRNA from alignment at Ecto-sp9_F_contig10633:3319..3647-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10633.575.1 ID=mRNA_Ecto-sp9_F_contig10633.575.1|Name=mRNA_Ecto-sp9_F_contig10633.575.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=329bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10633:3319..3647- (Ectocarpus species9 EcSCA_722f female)
GGAGATGTGTCGGGATTTTAGCGCATGGATCGACGCTGACTTTCGCGCTG
TTGGTTGCCCGCCAAAGAACGGCTATCTGGTCTGTCACCGGTATCAACAG
ATCGCACGATCTAGACAGGGCGAGATATTCTGGCTTGCGTGGGCGGAGTA
CCTCAAAACGACATATATCGCTCCAGGCCCTCCGATGTTATACAACATAT
GTTAGATGTAAACTACTTTACGCACCCCTCACGATCTTCCTGCCTGGTTA
GGAAAAGGGTTTCGGTCGGGCTGCTGGTGGAGCCGGATCTAGTTGGGGGT
CACCGGTGACACTGATACCTTAGTCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10633:3319..3647-

>mRNA_Ecto-sp9_F_contig10633.575.1 ID=mRNA_Ecto-sp9_F_contig10633.575.1|Name=mRNA_Ecto-sp9_F_contig10633.575.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10633:3319..3647- (Ectocarpus species9 EcSCA_722f female)
ATGTGTCGGGATTTTAGCGCATGGATCGACGCTGACTTTCGCGCTGTTGG
TTGCCCGCCAAAGAACGGCTATCTGATGTGTCGGGATTTTAGCGCATGGA
TCGACGCTGACTTTCGCGCTGTTGGTTGCCCGCCAAAGAACGGCTATCTG
GAAAAGGGTTTCGGTCGGGCTGCTGGTGGAGCCGGATCTAGTTGGGGGTC
ACCGGTGACACTGATACCTTAGGAAAAGGGTTTCGGTCGGGCTGCTGGTG
GAGCCGGATCTAGTTGGGGGTCACCGGTGACACTGATACCTTAG
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