mRNA_Ecto-sp9_F_contig10632.574.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10632.574.1
Unique NamemRNA_Ecto-sp9_F_contig10632.574.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10632.574.1 vs.
Match: N-acetyltransferase (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSL7_9PHAE)

HSP 1 Score: 544 bits (1401), Expect = 2.540e-191
Identity = 329/372 (88.44%), Postives = 331/372 (88.98%), Query Frame = 1 
Query:    1 MKGSVALLAGALPALFSCPQEITPRRPTCAGG--PAATAAVAAS-VAWASRPTPFAARRRHTGTRTSSSVPHRAHPASARCGQKRRATGAEPVRFGSSSLAEGPAWASETSSXXXXXXXXXXXAGLDREPAATRGGRVGGXXIGLSAAGSGSDDAAVDAFVSSAVPTAVDEGELTCGMLEGVVSREAALNGQEMVLRVAKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARAXXXXXXXXXXXXXXXXXXXXXXXXGVGLGADPAAXXXXXALETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIASRLYLTEVAVRSDCRRMGVGRVLLELVDDVARALKTSEV 1107
            MKGSVALLAGALPALFSCPQEITP RPTCAGG   AATAAVAAS VAWASRPTPFAARRRHTG RTSSS P RA PASARC QKRRA GAEPVRFGSSSLAEGPAWASETSS           AG+DREPAATRG  VGG   GLSAAGSGSDDAAVDAFVSSAVPTA+DEGELTCGMLEGVVSREAALNGQEMVLRVAKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARAXXXXXXXXXXXXXXXXXX      GV LGADP A     ALETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIA RLYLTEVAVRSDCRRMGVGRVLLELVDDVARALKTSEV
Sbjct:    1 MKGSVALLAGALPALFSCPQEITPPRPTCAGGGPDAATAAVAASAVAWASRPTPFAARRRHTGARTSSSAPRRARPASARCRQKRRAAGAEPVRFGSSSLAEGPAWASETSSGAGGAGSNSAAAGVDREPAATRGRCVGGGGNGLSAAGSGSDDAAVDAFVSSAVPTAIDEGELTCGMLEGVVSREAALNGQEMVLRVAKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARAXXXXXXXXXXXXXXXXXXEGG---GVELGADPTASAAASALETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIA-RLYLTEVAVRSDCRRMGVGRVLLELVDDVARALKTSEV 368
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10632.574.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UTX6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.040e-9
Identity = 52/176 (29.55%), Postives = 83/176 (47.16%), Query Frame = 1 
Query:  559 NGQEMVLRVAKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARAXXXXXXXXXXXXXXXXXXXXXXXXGVGLGADPAAXXXXXALETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIASRL-YLTEVAVRSDCRRMGVGRVLLELVDDVA 1083
            NG  + +RVA   D + IA++R  VFS     ++ +F +RSC  + +RR +GA C+VA+L    R                               +P+        +   ++  ++GT+ECS HEF GT L        +++  R+ Y+TEVAV    RR GVG  LL+ + ++A
Sbjct:  485 NGDALSVRVATAQDDYTIANLRLSVFSDFSPEVRKQFCQRSCEALAQRRLRGATCIVASLPKSMRGEIISRYVYED-------------------GNPSFSYTPPNSDLE-NEEWIMGTVECSVHEFAGTMLG------RSRLPERIMYITEVAVSPRARRFGVGTRLLQGIHELA 634
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10632.574.1 vs.
Match: N-acetyltransferase (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8X3_FISSO)

HSP 1 Score: 65.5 bits (158), Expect = 5.900e-8
Identity = 53/173 (30.64%), Postives = 72/173 (41.62%), Query Frame = 1 
Query:  571 MVLRVAKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARAXXXXXXXXXXXXXXXXXXXXXXXXGVGLGADPAAXXXXXALETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIASRLYLTEVAVRSDCRRMGVGRVLLELVDDVARA 1089
            +++R+A   D F IA +R  VFS      + +F ERSC  +  RR +GA CL+AA +                                                      VLG+ ECS HEF GT L      Q  +  S LY+TEVAV  D R  G+GR L++ VD  A++
Sbjct:  327 LLVRIANPSDDFQIAALRLSVFSDFTPEQQGKFCERSCQAISSRRLRGACCLIAAHENDTET-------------------------------------------------VLGSAECSYHEFFGTRLG-----QRRQQFSILYVTEVAVDMDARGQGIGRKLMDAVDVYAKS 445
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10632.574.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XL64_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.690e-7
Identity = 78/176 (44.32%), Postives = 94/176 (53.41%), Query Frame = 1 
Query:  562 GQEMVLRVAKLDDYFAIADVRFDVFSPV-HSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARAXXXXXXXXXXXXXXXXXXXXXXXXGVGLGADPAAXXXXXALETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIASRLYLTEVAVRSDCRRMGVGRVLLELVDDVAR 1086
            G  +   VA + ++  +AD+R  VF+P     ++ + R R+   M ERR KGA CLVA    P R+ XXXXXXXXXXXXXXXXXXXXX                   E       ++GTLECS HEFD  PL+            RLY+TEVAV    RR GV R LL  VDD AR
Sbjct:   93 GFNVETEVAGVVEFAEVADLRLSVFTPYPDGPIRQKLRVRAREKMIERRVKGATCLVAR---PTRSSXXXXXXXXXXXXXXXXXXXXX-------------------EEEAPVPPIIGTLECSTHEFDLAPLSGTTR--------RLYVTEVAVADGYRRRGVARALLRGVDDWAR 238
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10632.574.1 vs.
Match: N-acetyltransferase (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAD1_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 1.840e-7
Identity = 55/186 (29.57%), Postives = 76/186 (40.86%), Query Frame = 1 
Query:  532 GVVSREAALNGQEMVLRVAKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARAXXXXXXXXXXXXXXXXXXXXXXXXGVGLGADPAAXXXXXALETAVSDGHVLGTLECSRHEFDGTPLAVEVEEQGAKIASRLYLTEVAVRSDCRRMGVGRVLLELVDDVARA 1089
            G +     LN   +++R+A   D F IA +R  VFS   +  + +F ERSC  +  RR +GA CL+AA                                                        VLG+ ECS HEF GT L      Q  +  S LY+TEVAV  D R  G+G+ L++ VD  A++
Sbjct:  311 GAIVARPTLNNN-LLVRIATPTDDFQIAALRLSVFSDFTAEQQGKFCERSCQAISSRRLRGARCLIAAHQNDTET-------------------------------------------------VLGSAECSYHEFFGTRLG-----QRRQQFSILYVTEVAVDIDARGQGIGKKLMDAVDIYAKS 441
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10632.574.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2W4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.620e-7
Identity = 53/175 (30.29%), Postives = 76/175 (43.43%), Query Frame = 1 
Query:  571 MVLRVAKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPARAXXXXXXXXXXXXXXXXXXXXXXXXGVGLGADPAAXXXXXALETAVSDGH--VLGTLECSRHEFDGTPLAVEVEEQGAKIASRLYLTEVAVRSDCRRMGVGRVLLELVDDVARA 1089
            + +RVAK  D   IA +R  +FS   + ++  F  RSC ++  RR +GA C+VA +  P RA                                          + +SD    ++GT ECS HEF GT L     +      S LY+TEVAV    RR G+G  L++  D+ A+A
Sbjct:  129 ITVRVAKPVDDLCIASLRLSLFSDFSAHMRQAFCSRSCHVLDSRRNQGAACVVATI--PIRA------------------------------------------SDISDRTDIIVGTAECSIHEFYGTSLGESRLQD-----SILYITEVAVSPTIRRQGIGSKLMKAFDEFAKA 254
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10632.574.1 vs.
Match: N-acetyltransferase (domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9G7_THAOC)

HSP 1 Score: 60.5 bits (145), Expect = 2.530e-6
Identity = 59/195 (30.26%), Postives = 84/195 (43.08%), Query Frame = 1 
Query:  535 VVSREAALNGQEMVLR--VAKLDDYFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDG--PARAXXXXXXXXXXXXXXXXXXXXXXXXGVGL-----GADPAAXXXXXALETAVSDGH--VLGTLECSRHEFDGTPLAVEVEEQGAKIASRLYLTEVAVRSDCRRMGVGRVLLELVDDVAR 1086
            ++ R+ A    EM +R  +    D   IA++R  VFS      +  FR RS   +  RRR+G+  LVA ++   P R                         G  L     G           LE   + G   ++GT ECS  EF GT L      +  +  S +Y+TEVAV++D RR G G++LL  VD +AR
Sbjct:  297 LLRRDGAGLNPEMFIRSSIPHSSDDTHIANLRLSVFSGFDIDQQDLFRSRSLESINSRRRRGSVILVAEIENKEPVRNVEQQRYISSAHDFGYHGVLVAPDRGTKLVSASTGRAGVENEIQNELERQSTSGSLSIIGTAECSHQEFVGTILG-----RTRRKGSLMYVTEVAVQTDRRRSGTGKMLLRGVDRIAR 486
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10632.574.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
N-acetyltransferase2.540e-19188.44domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical7.040e-929.55protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
N-acetyltransferase5.900e-830.64domain-containing protein n=1 Tax=Fistulifera sola... [more]
Hypothetical1.690e-744.32protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
N-acetyltransferase1.840e-729.57domain-containing protein n=1 Tax=Fistulifera sola... [more]
Hypothetical2.620e-730.29protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]
N-acetyltransferase2.530e-630.26domain-containing protein n=1 Tax=Thalassiosira oc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10632contigEcto-sp9_F_contig10632:535..3994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score491.9
Seed ortholog evalue2.6e-136
Seed eggNOG ortholog2880.D7FPW7
EggNOG free text desc.Acetyltransferase (GNAT) family
EggNOG OGs2E9JV@1,2SFXA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-01_008410.1
Exons3
Model size1107
Cds size1107
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10632.574.1prot_Ecto-sp9_F_contig10632.574.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10632 535..3994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928281.9449294-CDS-Ecto-sp9_F_contig10632:534..6491622928281.9449294-CDS-Ecto-sp9_F_contig10632:534..649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10632 535..649 -
1692277819.7749853-CDS-Ecto-sp9_F_contig10632:534..6491692277819.7749853-CDS-Ecto-sp9_F_contig10632:534..649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10632 535..649 -
1622928281.9660904-CDS-Ecto-sp9_F_contig10632:1111..14871622928281.9660904-CDS-Ecto-sp9_F_contig10632:1111..1487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10632 1112..1487 -
1692277819.7877235-CDS-Ecto-sp9_F_contig10632:1111..14871692277819.7877235-CDS-Ecto-sp9_F_contig10632:1111..1487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10632 1112..1487 -
1622928281.9801621-CDS-Ecto-sp9_F_contig10632:3378..39941622928281.9801621-CDS-Ecto-sp9_F_contig10632:3378..3994Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10632 3379..3994 -
1692277819.798118-CDS-Ecto-sp9_F_contig10632:3378..39941692277819.798118-CDS-Ecto-sp9_F_contig10632:3378..3994Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10632 3379..3994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10632.574.1

>prot_Ecto-sp9_F_contig10632.574.1 ID=prot_Ecto-sp9_F_contig10632.574.1|Name=mRNA_Ecto-sp9_F_contig10632.574.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=369bp
MKGSVALLAGALPALFSCPQEITPRRPTCAGGPAATAAVAASVAWASRPT
PFAARRRHTGTRTSSSVPHRAHPASARCGQKRRATGAEPVRFGSSSLAEG
PAWASETSSGGGGGGSNSAAAGLDREPAATRGGRVGGGGIGLSAAGSGSD
DAAVDAFVSSAVPTAVDEGELTCGMLEGVVSREAALNGQEMVLRVAKLDD
YFAIADVRFDVFSPVHSTLKHRFRERSCLLMRERRRKGAFCLVAALDGPA
RAAAAAAAAAAAAAADRAAASQKEGGGVGLGADPAASAAAAALETAVSDG
HVLGTLECSRHEFDGTPLAVEVEEQGAKIASRLYLTEVAVRSDCRRMGVG
RVLLELVDDVARALKTSEV
back to top

mRNA from alignment at Ecto-sp9_F_contig10632:535..3994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10632.574.1 ID=mRNA_Ecto-sp9_F_contig10632.574.1|Name=mRNA_Ecto-sp9_F_contig10632.574.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3460bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10632:535..3994- (Ectocarpus species9 EcSCA_722f female)
ATGAAGGGGTCTGTGGCTCTCCTGGCCGGTGCCCTACCCGCTCTGTTCTC
GTGCCCTCAAGAGATCACTCCTCGAAGACCGACATGTGCCGGCGGCCCTG
CTGCAACCGCTGCTGTGGCCGCGTCAGTAGCATGGGCTTCGAGACCGACT
CCGTTTGCTGCTCGCCGCAGGCATACAGGGACGCGAACAAGCAGCAGTGT
GCCACACCGTGCGCATCCAGCGTCCGCCCGCTGCGGGCAAAAGCGTCGCG
CCACCGGCGCTGAGCCCGTCCGCTTCGGCAGCAGCAGTCTGGCCGAGGGT
CCGGCTTGGGCTTCCGAGACGTCTTCAGGCGGCGGCGGCGGCGGCAGCAA
CAGCGCAGCAGCTGGCCTGGATCGCGAGCCGGCAGCTACTCGAGGCGGGC
GTGTTGGCGGCGGCGGAATTGGCCTGTCGGCTGCTGGAAGCGGCAGTGAC
GATGCCGCCGTTGACGCGTTTGTTTCTTCCGCCGTACCGACAGCTGTCGA
CGAGGGCGAGTTGACGTGCGGGATGCTGGAGGGCGTGGTTTCTCGAGAGG
CTGCGCTGAATGGGCAGGAGATGGTCCTCAGGGTGGCCAAACTAGATGAC
TATTTCGCGATCGCGGGTGAGTGCCAAGTGTTTGGCGCTTTTCTTCGACC
ACGACGACAGCACACCAGAACAACACACTACCGTTTTTCAAATGCAACAT
GTTCACACAGACAAGGTGATTGATTTTCAAACGTTTAAAAATCGACCGAA
CAATCGCGGCCGCCCGACCGAGTACTAGGAGCGAAAACACTGCCGCGAGT
ACAGTATCTTCGGAAACATAAACACAAACACAAAATAAGCACAAACACAG
AAAGACTACCCATTCGAGATAAGACCACAGTCGAACGGGATGTGTTGAAG
TCACAGTAAATGGAGGGAAACCGGATGGGTTTGGGCTTATTTGGATATCT
ACAAGCGTATATAGTTGAACATGAGCATTACCCGTGTCGGTACTATAATA
ATAAAATTCTGGGATATGCGCACACCAGCAGTAGTGGCGTAGCACCTATG
CCACACCAGCAGTAGTGGCGCAGCACCTATGCAACTATGACTCCACTACT
CTGGTACCATGTTTTATGTTTTTGTTTGTAAGACTACATAATCGGAGACA
GCAGCAGGCCCCCGCAAATACCGAAATATCAGGTCTTGCCGAGGTAGAGC
TCAAGTGTGAAGAAAACTTCCGCGCTTGTCTCGTCGATTTTGACTCTACT
GCAGTCAAACGGAATGAGCAGTAGTCGGTCGATCACGTGCCCAATCTATT
ATGATGACAGCAGACATTATTCGATGCAAAGGCAACTAAGTTCTTTGTTA
GTCGATGGACGTGCCGAACTGCTCTGATGCCCAGCGGTGTGTGGTTGTTC
TTGTTGCATGATTCGCCGCATCTACAGCAGCACTGTACGTCTGTCTCTCG
ATTTCCGGCGTCGTCTGTACGGTGACTTGGTAGAAACAGGCTACATTTAG
ACCGCCAGGTTGTATATGTTCTATATAGGATAAGAAAAGATGATAACATT
AAACATTTCAGGATTACTCACTCTAAGAAGACGGGACTTGGCGATGTCTT
GATTTGATTAGTATAGAACAGTGTATGGTATTATAGTCATCCTCTGCATA
CCGGTATGTTTGGTTTCCCGCCCACGTCATCATCCCTTCAGTTGAGGCTT
CCGAAGCATCCCTCTGAATCTCATCTCGGTAGCCGATCATTCTCTGATGT
TAACGTTGTGTTCCCACCAAGCTCACATCGCTGGACAGCGGAGCGCACCC
TCTACTTTTGGATGACGTATGCGTCACTATGGCACCGAGTACATCACCAC
CAGCACAAGCCGCAACGCTGGTGCTAAATTTAGCTTTGTTGGAACAGATC
CGCATGTCTAGTTTGCCACACGCACGACCTCAAATACATGTCTGTGATCC
TCTCACATGTAAGAATATCATACGATGTTCCGTTATATGCGCTACACATG
TACATGGCACACCCAGCTGGCCCCCTCCTGCGATTGGTGCTGGCACCATT
CTTGTTGGCGCCTGTACGCCTCTGTTCAAACGTACCCTTGCCGCCAACGT
CGGTAACGTTTGGACTGTGTAGCATCAGACCGCTCTTGGTGTGGTGCGCG
CGGCTGCAACAAATGTTGGATTTCCGCTTGGTTCCGATGCAGATTACGGA
CTTTTTTGTCAAGGACTGCTGCGACCTTCGATATTTCAGCTCCAGTAGCA
AACCTGAACGTGCCTGCACGCACTCCGCCTCTCCATGGTGTCCTCTACTG
ATGACAGTAGAAAACCAAATGACCCTAACCCCCGAAGGTTGTTTTCTGTT
TTTATGTTGTATTAAAAGTATTAGAAAAGACCCAGCGTCAAGAAACCCTT
TGTCTGGACCCCCTTAACACCTGCTGCCACTCGTCGACGTAGATCCCGTA
TGCACGTAGCTCATCACCCCCCCCCCCCCCCCATCACTCTTGATGTTTTC
TATCCAGACGTTAGATTCGATGTATTCTCCCCGGTGCACTCGACCCTCAA
GCACCGCTTTAGAGAGAGGAGCTGCTTGCTCATGAGGGAGAGAAGGCGAA
AGGGGGCGTTTTGCCTCGTCGCCGCCCTGGATGGTCCCGCAAGAGCGGCA
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCCGATAGGGCTGCTGC
TAGCCAGAAGGAGGGGGGAGGGGTAGGGTTGGGGGCGGACCCCGCTGCTA
GCGCGGCGGCAGCAGCGTTAGAGACGGCGGTTTCCGATGGCCACGTCCTG
GGGACTTTAGAGTGCTCCAGGCACGAGTTTGACGGCACGCCTCTGGCTGT
GGAAGTCGAAGAACAGGGCGCAAAAATCGCAAGGTTGGTTGGGGTTTCGT
TTTTGTTTTTTGTTGGTGCTGCTCGTGGGTGTTGGCGTTAGTTGTTGCCG
TGTTCGTGCAGTCAGTCGGTGCCCGACACGCTTGTAAGGTTTGTTTCCGG
TGAAGCGGCGGTGTGAATGGTTGGTGTGATTCACGGGTTGGGTCCAAGAG
GGTGTTTGCATGAGTATTGCGGGTATGCGGAACGTAGTGCGGCGGTGGGA
TCTGCCGTTTCGCCTCCGTGCATGTAAAACGTGCACGCGTGCCTACTTAT
GGCCAATTGACCTGTAGTAAATAGGCGATAATGACCATGGCTGTTTCCAC
GAGTGTGTCTGGTCGGGGCAATATGACTCGTCAACGCCACAGCACCTCAT
CGCATTTCCTCACCGCCGAAACCGCGTACGCCCGCCCCCGCCCCCGCCCG
CCCCCACGACCGGCGTCCGTGTCTCACGACAACGTCAAAACTGAGCAGGT
TATACCTCACCGAGGTCGCAGTCCGCTCGGACTGCCGGAGAATGGGGGTG
GGGCGTGTCCTGTTGGAGTTGGTGGATGACGTCGCGAGGGCGCTCAAGAC
GTCGGAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10632:535..3994-

>mRNA_Ecto-sp9_F_contig10632.574.1 ID=mRNA_Ecto-sp9_F_contig10632.574.1|Name=mRNA_Ecto-sp9_F_contig10632.574.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2214bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10632:535..3994- (Ectocarpus species9 EcSCA_722f female)
ATGAAGGGGTCTGTGGCTCTCCTGGCCGGTGCCCTACCCGCTCTGTTCTC
GTGCCCTCAAGAGATCACTCCTCGAAGACCGACATGTGCCGGCGGCCCTG
CTGCAACCGCTGCTGTGGCCGCGTCAGTAGCATGGGCTTCGAGACCGACT
CCGTTTGCTGCTCGCCGCAGGCATACAGGGACGCGAACAAGCAGCAGTGT
GCCACACCGTGCGCATCCAGCGTCCGCCCGCTGCGGGCAAAAGCGTCGCG
CCACCGGCGCTGAGCCCGTCCGCTTCGGCAGCAGCAGTCTGGCCGAGGGT
CCGGCTTGGGCTTCCGAGACGTCTTCAGGCGGCGGCGGCGGCGGCAGCAA
CAGCGCAGCAGCTGGCCTGGATCGCGAGCCGGCAGCTACTCGAGGCGGGC
GTGTTGGCGGCGGCGGAATTGGCCTGTCGGCTGCTGGAAGCGGCAGTGAC
GATGCCGCCGTTGACGCGTTTGTTTCTTCCGCCGTACCGACAGCTGTCGA
CGAGGGCGAGTTGACGTGCGGGATGCTGGAGGGCGTGGTTTCTCGAGAGG
CTGCGCTGAATGGGCAGGAGATGGTCCTCAGGGTGGCCAAACTAGATGAC
TATTTCGCGATCGCGGATGAAGGGGTCTGTGGCTCTCCTGGCCGGTGCCC
TACCCGCTCTGTTCTCGTGCCCTCAAGAGATCACTCCTCGAAGACCGACA
TGTGCCGGCGGCCCTGCTGCAACCGCTGCTGTGGCCGCGTCAGTAGCATG
GGCTTCGAGACCGACTCCGTTTGCTGCTCGCCGCAGGCATACAGGGACGC
GAACAAGCAGCAGTGTGCCACACCGTGCGCATCCAGCGTCCGCCCGCTGC
GGGCAAAAGCGTCGCGCCACCGGCGCTGAGCCCGTCCGCTTCGGCAGCAG
CAGTCTGGCCGAGGGTCCGGCTTGGGCTTCCGAGACGTCTTCAGGCGGCG
GCGGCGGCGGCAGCAACAGCGCAGCAGCTGGCCTGGATCGCGAGCCGGCA
GCTACTCGAGGCGGGCGTGTTGGCGGCGGCGGAATTGGCCTGTCGGCTGC
TGGAAGCGGCAGTGACGATGCCGCCGTTGACGCGTTTGTTTCTTCCGCCG
TACCGACAGCTGTCGACGAGGGCGAGTTGACGTGCGGGATGCTGGAGGGC
GTGGTTTCTCGAGAGGCTGCGCTGAATGGGCAGGAGATGGTCCTCAGGGT
GGCCAAACTAGATGACTATTTCGCGATCGCGGACGTTAGATTCGATGTAT
TCTCCCCGGTGCACTCGACCCTCAAGCACCGCTTTAGAGAGAGGAGCTGC
TTGCTCATGAGGGAGAGAAGGCGAAAGGGGGCGTTTTGCCTCGTCGCCGC
CCTGGATGGTCCCGCAAGAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCAGCGGCCGATAGGGCTGCTGCTAGCCAGAAGGAGGGGGGAGGGGTA
GGGTTGGGGGCGGACCCCGCTGCTAGCGCGGCGGCAGCAGCGTTAGAGAC
GGCGGTTTCCGATGGCCACGTCCTGGGGACTTTAGAGTGCTCCAGGCACG
AGTTTGACGGCACGCCTCTGGCTGTGGAAGTCGAAGAACAGGGCGCAAAA
ATCGCAAGACGTTAGATTCGATGTATTCTCCCCGGTGCACTCGACCCTCA
AGCACCGCTTTAGAGAGAGGAGCTGCTTGCTCATGAGGGAGAGAAGGCGA
AAGGGGGCGTTTTGCCTCGTCGCCGCCCTGGATGGTCCCGCAAGAGCGGC
AGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCCGATAGGGCTGCTG
CTAGCCAGAAGGAGGGGGGAGGGGTAGGGTTGGGGGCGGACCCCGCTGCT
AGCGCGGCGGCAGCAGCGTTAGAGACGGCGGTTTCCGATGGCCACGTCCT
GGGGACTTTAGAGTGCTCCAGGCACGAGTTTGACGGCACGCCTCTGGCTG
TGGAAGTCGAAGAACAGGGCGCAAAAATCGCAAGCAGGTTATACCTCACC
GAGGTCGCAGTCCGCTCGGACTGCCGGAGAATGGGGGTGGGGCGTGTCCT
GTTGGAGTTGGTGGATGACGTCGCGAGGGCGCTCAAGACGTCGGAGGTGC
AGGTTATACCTCACCGAGGTCGCAGTCCGCTCGGACTGCCGGAGAATGGG
GGTGGGGCGTGTCCTGTTGGAGTTGGTGGATGACGTCGCGAGGGCGCTCA
AGACGTCGGAGGTG
back to top