mRNA_Ecto-sp9_F_contig10631.573.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10631.573.1
Unique NamemRNA_Ecto-sp9_F_contig10631.573.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10631.573.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D6_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.000e-68
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:    1 VVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFISKPAGTSSSQTAPAXXXXXX--IAPLAESKRPPGWGSKTIPSQKPAVEEEGGTPRRRWWRFW 360
            VVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFISKPAGTSSSQTAP XXXXXX  IAPLAE+KRPPGWGSKTIPSQKPAVEEEGGTPRRRWWRFW
Sbjct:   52 VVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFISKPAGTSSSQTAPXXXXXXXXXIAPLAENKRPPGWGSKTIPSQKPAVEEEGGTPRRRWWRFW 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10631.573.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.000e-6896.72protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D6... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10631contigEcto-sp9_F_contig10631:2405..4043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_004060.1
Exons2
Model size1152
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10631.573.1prot_Ecto-sp9_F_contig10631.573.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10631 3194..4010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928281.8726072-UTR-Ecto-sp9_F_contig10631:2404..31931622928281.8726072-UTR-Ecto-sp9_F_contig10631:2404..3193Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10631 2405..3193 -
1692277819.7300863-UTR-Ecto-sp9_F_contig10631:2404..31931692277819.7300863-UTR-Ecto-sp9_F_contig10631:2404..3193Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10631 2405..3193 -
1622928281.9049509-UTR-Ecto-sp9_F_contig10631:4010..40431622928281.9049509-UTR-Ecto-sp9_F_contig10631:4010..4043Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10631 4011..4043 -
1692277819.7649302-UTR-Ecto-sp9_F_contig10631:4010..40431692277819.7649302-UTR-Ecto-sp9_F_contig10631:4010..4043Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10631 4011..4043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928281.8838656-CDS-Ecto-sp9_F_contig10631:3193..34781622928281.8838656-CDS-Ecto-sp9_F_contig10631:3193..3478Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10631 3194..3478 -
1692277819.7380202-CDS-Ecto-sp9_F_contig10631:3193..34781692277819.7380202-CDS-Ecto-sp9_F_contig10631:3193..3478Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10631 3194..3478 -
1622928281.8944-CDS-Ecto-sp9_F_contig10631:3965..40101622928281.8944-CDS-Ecto-sp9_F_contig10631:3965..4010Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10631 3966..4010 -
1692277819.7513068-CDS-Ecto-sp9_F_contig10631:3965..40101692277819.7513068-CDS-Ecto-sp9_F_contig10631:3965..4010Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10631 3966..4010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10631.573.1

>prot_Ecto-sp9_F_contig10631.573.1 ID=prot_Ecto-sp9_F_contig10631.573.1|Name=mRNA_Ecto-sp9_F_contig10631.573.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=110bp
MKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFIS
KPAGTSSSQTAPAATTTTTIAPLAESKRPPGWGSKTIPSQKPAVEEEGGT
PRRRWWRFW*
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mRNA from alignment at Ecto-sp9_F_contig10631:2405..4043-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10631.573.1 ID=mRNA_Ecto-sp9_F_contig10631.573.1|Name=mRNA_Ecto-sp9_F_contig10631.573.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1639bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10631:2405..4043- (Ectocarpus species9 EcSCA_722f female)
GTGGTTCGTGGCCGCCATGAAGTGGACGACCGAATGAAGGAGTTCTTCAA
ACGGGTCAACAACAACGACCCCAGAGAGGTGAGAGACTATTAGGCCTCAA
CGCCACGGGCGCGGATGGGGGCGCCGCTGCTGCTGCTTGCTCAGACTACA
AGAATTCAACATGTAGAAATGCTTGCTCCTTAAGAATCACTCCATTAGTC
TCGCCGGCGCTGGCTAGGGCTAGACTATGGTTTTTGATTTCAGCTTGTAT
TATAATATAAGGCCGTGAGGTGGGGTCCGGATGACCCGACGCTTTCACTC
CAAGGAGGGTGACTCCCCTCGCCACCAGCTCCTCGGAGTTGACCCTTAGC
GGTTTAGAGTTCAACTCGCACGCCGACGACGTCGAAGCAACCGCCGCATG
ACAGATGTTGGTCCTGCAGAGAGGGTATGGTCGCTTTTGCGCTTGTTTTT
CCCCGCGAGTTGGTTGACTTCTCTCCGGTCCCAGAACCGTTTCGAACAAG
TAAGCCCAATTATGCGACTTGTGTTCGTGATTGAAACCGTTGCGTACACC
CCCGCCGCCTTAAAGGAGGAGCGCATGCGAGACCTCCTCAACAAGGGGAA
AGGGTCCCACTACAGCGCCAAGCGTCGGCACGCCACGACCAAGGACATCG
AGGAGTTCGGCTTCATCTCCAAGCCTGCCGGCACTTCCTCCTCTCAGACG
GCACCGGCGGCGACAACGACAACAACAATCGCCCCGTTGGCCGAGAGCAA
GCGACCACCAGGTTGGGGGTCGAAGACCATCCCGTCGCAGAAGCCGGCGG
TTGAGGAGGAGGGGGGGACGCCGAGACGACGATGGTGGAGATTCTGGTAA
TAGCACCAACGAACAAAAGGTTCGCTATCGTTGTGTGTGCGCCACGGCTG
CTTTTCCCCGAATGAATCGAGTTTCAAGTTTCTCGACGAGAGGCTAGAGC
GCGTCCTGCCCCGGTGCAGGGAGGGTCACGCGCGGTTACCGCCAAGAGAC
AAAAACGGCTCGGGATTTCATCAGCAGAGAGGAAATCATGGTCTGGGATT
TCGTGAGCAGAGAGGAAATCACAGTCGCTTCGCGCTGGGGGGATTGCCCC
GAACTGACGTGGGTCTATGTTTCGTGGTGTATTCGTAGATGGTCTGAACC
AACTTGGCGTGTGTGTGGAAGTGTAATGTGTGACGGTTTTTGAGGGTCGC
CGGTTCTCGCTCTCACGGCAGCTCTTCTGGCGGGCGATGCTATGCGGCTT
GGTGAGGGGGGCAACCAGGGTTCCTGGTAACACTGGCTCGGGAGGAGCGA
CGATAAAACACACGACAGCAGTGCCTTCTTTTCGCTCAGGCTCACCCCGT
GACGATGCTGTTGGCCGGGACTTTTTCTTTGTATCCTGGGTGTAACCATG
AATTGGAGCACGTACAGTAAGTACCCTACAGAAAAATGCCACGAGCCCCA
CCAAACACAGAAAAATGCCCGTTCGCTGTTTGGTGGGGGCATGCGTTGTT
TGCGCCAGGATCGTTTTCGGCCGGAAGCGCCCACTGGTGTTTGGGAGCTG
ATGATTTTGCTCCTGCTGTTACAGCCTCTGTAGATCACAAAACTAGAAAC
GCGTCCCCGACGTCTTTTGCCATAGCAGGCACCCCGCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10631:2405..4043-

>mRNA_Ecto-sp9_F_contig10631.573.1 ID=mRNA_Ecto-sp9_F_contig10631.573.1|Name=mRNA_Ecto-sp9_F_contig10631.573.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10631:2405..4043- (Ectocarpus species9 EcSCA_722f female)
ATGAAGGAGTTCTTCAAACGGGTCAACAACAACGACCCCAGAGAGATGAA
GGAGTTCTTCAAACGGGTCAACAACAACGACCCCAGAGAGGAGGAGCGCA
TGCGAGACCTCCTCAACAAGGGGAAAGGGTCCCACTACAGCGCCAAGCGT
CGGCACGCCACGACCAAGGACATCGAGGAGTTCGGCTTCATCTCCAAGCC
TGCCGGCACTTCCTCCTCTCAGACGGCACCGGCGGCGACAACGACAACAA
CAATCGCCCCGTTGGCCGAGAGCAAGCGACCACCAGGTTGGGGGTCGAAG
ACCATCCCGTCGCAGAAGCCGGCGGTTGAGGAGGAGGGGGGGACGCCGAG
ACGACGATGGTGGAGATTCTGGTAAGAGGAGCGCATGCGAGACCTCCTCA
ACAAGGGGAAAGGGTCCCACTACAGCGCCAAGCGTCGGCACGCCACGACC
AAGGACATCGAGGAGTTCGGCTTCATCTCCAAGCCTGCCGGCACTTCCTC
CTCTCAGACGGCACCGGCGGCGACAACGACAACAACAATCGCCCCGTTGG
CCGAGAGCAAGCGACCACCAGGTTGGGGGTCGAAGACCATCCCGTCGCAG
AAGCCGGCGGTTGAGGAGGAGGGGGGGACGCCGAGACGACGATGGTGGAG
ATTCTGGTAA
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