mRNA_Ecto-sp9_F_contig10629.571.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10629.571.1
Unique NamemRNA_Ecto-sp9_F_contig10629.571.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG0_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.350e-48
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1
Query:    1 MIIKSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLTGEVCEGRRYP 246
            MI+ SSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEK ENGVLCDEATL+SLTGEVC+GRRYP
Sbjct:    1 MIVMSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEATLQSLTGEVCKGRRYP 82          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.970e-15
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    7 IKSSDER-FKRKTGVGIATGHMCTGIIGKPNF-RSEYALAGDVVNLAARLAAASEKEENG-VLCDEATLE 207
            IK + +R F+ + GVGIA+G +C G+IGK +F R EYALAGD+VNLAARLAA ++ E  G VLCD+ T+E
Sbjct:   33 IKETAKRDFRHRVGVGIASGQICCGLIGKADFSRCEYALAGDMVNLAARLAARADTEREGCVLCDQYTIE 102          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUT1_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 6.890e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEA 198
            GI TGH   G++G P  R EYA+ GD+VN AARLA  + K    +LC EA
Sbjct:   79 GITTGHCFCGLVGDPKIRCEYAVMGDIVNTAARLAGGAAKRGESILCAEA 128          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Uncharacterized (protein FM146 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCL0_NAEGR)

HSP 1 Score: 52.0 bits (123), Expect = 8.530e-6
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   37 KTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLTG 219
            K G+GIA+G    G +G   +R E+ + GD VNLAARL   SEK +  VLC+E T + L G
Sbjct:  414 KFGLGIASGKCFIGNVGS-EYRKEFTIYGDKVNLAARLMKESEKNDGVVLCEEETAQMLKG 473          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLZ7_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.140e-5
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESL 213
            G+ATG    G++G P  R EYA+ GD VN AARLAA + K    +LC ++  E++
Sbjct:  188 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 242          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZX5_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.170e-5
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESL 213
            G+ATG    G++G P  R EYA+ GD VN AARLAA + K    +LC ++  E++
Sbjct:  545 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 599          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNJ4_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.490e-5
Identity = 27/78 (34.62%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 MIIKSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLTGEVCEG 234
            ++++ +D RF      G+A G    G++G P+ R EYA+ GD VN AARLAAA+      ++C E+  +++  +   G
Sbjct:  198 VLLQQADLRFT----AGLAAGWCYCGLVGSPDSRCEYAVMGDTVNTAARLAAAAADLNRVIVCSESMRDAIHADTGHG 271          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylyl (cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBI5_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 3.930e-5
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESL 213
            G+A+G+   G++G P  R EYA+ GD VN AARLA A+ K    ++C E+   +L
Sbjct:  481 GLASGNCYCGLVGSPEIRCEYAVMGDTVNTAARLAGAAHKMGRPIICAESLRAAL 535          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Adenylate/guanylate (cyclase domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VRV3_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 5.420e-5
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   19 DERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLT 216
            D+R K   GVG+  G +  G IG P+FR E+ + GD VNLAARL +A+++ +  +L  +   E LT
Sbjct:  520 DDRIKLSIGVGVNHGEVVVGNIGHPDFRMEFTVLGDGVNLAARLESATKQFKTDLLVGQEA-EKLT 584          
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3H5_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 5.470e-5
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLTGEV 225
            G+++G    GIIGKP+ R EYA+ GDVVN AARLA A+      +LC +   +    ++
Sbjct:   42 GVSSGMCFCGIIGKPDIRCEYAVMGDVVNTAARLAVAAAARGVRLLCTDVAAQGARSDL 100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Guanylate3.350e-4893.90cyclase domain-containing protein n=1 Tax=Ectocarp... [more]
Guanylate7.970e-1558.57cyclase domain-containing protein n=1 Tax=Tribonem... [more]
Hypothetical6.890e-752.00protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID... [more]
Uncharacterized8.530e-647.54protein FM146 n=1 Tax=Naegleria gruberi TaxID=5762... [more]
Guanylate1.140e-545.45cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=58273... [more]
Guanylate1.170e-545.45cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=58273... [more]
Guanylate1.490e-534.62cyclase domain-containing protein n=1 Tax=Tetrasel... [more]
Guanylyl3.930e-543.64cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=58273... [more]
Adenylate/guanylate5.420e-542.42cyclase domain-containing protein n=1 Tax=Verrucom... [more]
Hypothetical5.470e-542.37protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10629contigEcto-sp9_F_contig10629:89..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylyl cyclase class-3/4/guanylyl cyclase
Ec32 orthologEc-10_005510.1
Exons2
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928281.571097-CDS-Ecto-sp9_F_contig10629:88..2361622928281.571097-CDS-Ecto-sp9_F_contig10629:88..236Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10629 89..236 -
1692277819.6914895-CDS-Ecto-sp9_F_contig10629:88..2361692277819.6914895-CDS-Ecto-sp9_F_contig10629:88..236Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10629 89..236 -
1622928281.5853093-CDS-Ecto-sp9_F_contig10629:400..5011622928281.5853093-CDS-Ecto-sp9_F_contig10629:400..501Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10629 401..501 -
1692277819.7028782-CDS-Ecto-sp9_F_contig10629:400..5011692277819.7028782-CDS-Ecto-sp9_F_contig10629:400..501Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10629 401..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10629.571.1prot_Ecto-sp9_F_contig10629.571.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10629 89..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10629.571.1

>prot_Ecto-sp9_F_contig10629.571.1 ID=prot_Ecto-sp9_F_contig10629.571.1|Name=mRNA_Ecto-sp9_F_contig10629.571.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
MIIKSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARL
AAASEKEENGVLCDEATLESLTGEVCEGRRYP*
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mRNA from alignment at Ecto-sp9_F_contig10629:89..501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10629.571.1 ID=mRNA_Ecto-sp9_F_contig10629.571.1|Name=mRNA_Ecto-sp9_F_contig10629.571.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=413bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10629:89..501- (Ectocarpus species9 EcSCA_722f female)
ATGATCATTAAGTCCTCCGATGAACGGTTCAAGAGGAAGACTGGTGTCGG GATCGCCACGGGTCACATGTGCACGGGAATCATCGGAAAGCCGAACTTCA GGTGAGGGTTAGAGGCCCTGAAAAAAGCTGCGGTGTACCTTGTGTTGTCG GCCTCGTGGTTGTGGCCGTGCATTCCCGTTTGAGGGGCCACGCACACACG GGCCACCTTACGGCCCACCGTGTGTTCGCCCGCGCACACACACCGCAACC TTCACCAAACCTCAGGTCAGAGTATGCCCTAGCCGGGGACGTGGTCAACC TGGCGGCGAGGCTTGCCGCCGCATCGGAGAAGGAAGAAAACGGCGTCCTC TGTGACGAAGCAACGCTAGAGTCTCTGACCGGCGAGGTATGCGAGGGCCG TCGATACCCATGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10629:89..501-

>mRNA_Ecto-sp9_F_contig10629.571.1 ID=mRNA_Ecto-sp9_F_contig10629.571.1|Name=mRNA_Ecto-sp9_F_contig10629.571.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10629:89..501- (Ectocarpus species9 EcSCA_722f female)
ATGATCATTAAGTCCTCCGATGAACGGTTCAAGAGGAAGACTGGTGTCGG
GATCGCCACGGGTCACATGTGCACGGGAATCATCGGAAAGCCGAACTTCA
GATGATCATTAAGTCCTCCGATGAACGGTTCAAGAGGAAGACTGGTGTCG
GGATCGCCACGGGTCACATGTGCACGGGAATCATCGGAAAGCCGAACTTC
AGGTCAGAGTATGCCCTAGCCGGGGACGTGGTCAACCTGGCGGCGAGGCT
TGCCGCCGCATCGGAGAAGGAAGAAAACGGCGTCCTCTGTGACGAAGCAA
CGCTAGAGTCTCTGACCGGCGAGGTATGCGAGGGCCGTCGATACCCATGA
GTCAGAGTATGCCCTAGCCGGGGACGTGGTCAACCTGGCGGCGAGGCTTG
CCGCCGCATCGGAGAAGGAAGAAAACGGCGTCCTCTGTGACGAAGCAACG
CTAGAGTCTCTGACCGGCGAGGTATGCGAGGGCCGTCGATACCCATGA
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