mRNA_Ecto-sp9_F_contig10629.571.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG0_ECTSI) HSP 1 Score: 156 bits (394), Expect = 3.350e-48 Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1
Query: 1 MIIKSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLTGEVCEGRRYP 246
MI+ SSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEK ENGVLCDEATL+SLTGEVC+GRRYP
Sbjct: 1 MIVMSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEATLQSLTGEVCKGRRYP 82
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC7_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 7.970e-15 Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 7 IKSSDER-FKRKTGVGIATGHMCTGIIGKPNF-RSEYALAGDVVNLAARLAAASEKEENG-VLCDEATLE 207
IK + +R F+ + GVGIA+G +C G+IGK +F R EYALAGD+VNLAARLAA ++ E G VLCD+ T+E
Sbjct: 33 IKETAKRDFRHRVGVGIASGQICCGLIGKADFSRCEYALAGDMVNLAARLAARADTEREGCVLCDQYTIE 102
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUT1_9CHLO) HSP 1 Score: 55.1 bits (131), Expect = 6.890e-7 Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query: 49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEA 198
GI TGH G++G P R EYA+ GD+VN AARLA + K +LC EA
Sbjct: 79 GITTGHCFCGLVGDPKIRCEYAVMGDIVNTAARLAGGAAKRGESILCAEA 128
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Uncharacterized (protein FM146 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCL0_NAEGR) HSP 1 Score: 52.0 bits (123), Expect = 8.530e-6 Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 37 KTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLTG 219
K G+GIA+G G +G +R E+ + GD VNLAARL SEK + VLC+E T + L G
Sbjct: 414 KFGLGIASGKCFIGNVGS-EYRKEFTIYGDKVNLAARLMKESEKNDGVVLCEEETAQMLKG 473
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLZ7_9CHLO) HSP 1 Score: 51.6 bits (122), Expect = 1.140e-5 Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESL 213
G+ATG G++G P R EYA+ GD VN AARLAA + K +LC ++ E++
Sbjct: 188 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 242
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZX5_9CHLO) HSP 1 Score: 51.6 bits (122), Expect = 1.170e-5 Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESL 213
G+ATG G++G P R EYA+ GD VN AARLAA + K +LC ++ E++
Sbjct: 545 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 599
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylate (cyclase domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNJ4_9CHLO) HSP 1 Score: 51.2 bits (121), Expect = 1.490e-5 Identity = 27/78 (34.62%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 1 MIIKSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLTGEVCEG 234
++++ +D RF G+A G G++G P+ R EYA+ GD VN AARLAAA+ ++C E+ +++ + G
Sbjct: 198 VLLQQADLRFT----AGLAAGWCYCGLVGSPDSRCEYAVMGDTVNTAARLAAAAADLNRVIVCSESMRDAIHADTGHG 271
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Guanylyl (cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBI5_9CHLO) HSP 1 Score: 50.1 bits (118), Expect = 3.930e-5 Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESL 213
G+A+G+ G++G P R EYA+ GD VN AARLA A+ K ++C E+ +L
Sbjct: 481 GLASGNCYCGLVGSPEIRCEYAVMGDTVNTAARLAGAAHKMGRPIICAESLRAAL 535
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Adenylate/guanylate (cyclase domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VRV3_9BACT) HSP 1 Score: 49.7 bits (117), Expect = 5.420e-5 Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 19 DERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLT 216
D+R K GVG+ G + G IG P+FR E+ + GD VNLAARL +A+++ + +L + E LT
Sbjct: 520 DDRIKLSIGVGVNHGEVVVGNIGHPDFRMEFTVLGDGVNLAARLESATKQFKTDLLVGQEA-EKLT 584
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3H5_9CHLO) HSP 1 Score: 49.3 bits (116), Expect = 5.470e-5 Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKEENGVLCDEATLESLTGEV 225
G+++G GIIGKP+ R EYA+ GDVVN AARLA A+ +LC + + ++
Sbjct: 42 GVSSGMCFCGIIGKPDIRCEYAVMGDVVNTAARLAVAAAARGVRLLCTDVAAQGARSDL 100 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10629.571.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10629.571.1 >prot_Ecto-sp9_F_contig10629.571.1 ID=prot_Ecto-sp9_F_contig10629.571.1|Name=mRNA_Ecto-sp9_F_contig10629.571.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp MIIKSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLback to top mRNA from alignment at Ecto-sp9_F_contig10629:89..501- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10629.571.1 ID=mRNA_Ecto-sp9_F_contig10629.571.1|Name=mRNA_Ecto-sp9_F_contig10629.571.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=413bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10629:89..501- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10629:89..501- >mRNA_Ecto-sp9_F_contig10629.571.1 ID=mRNA_Ecto-sp9_F_contig10629.571.1|Name=mRNA_Ecto-sp9_F_contig10629.571.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10629:89..501- (Ectocarpus species9 EcSCA_722f female)back to top |