mRNA_Ecto-sp9_F_contig1062.566.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1062.566.1
Unique NamemRNA_Ecto-sp9_F_contig1062.566.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 661 bits (1705), Expect = 2.150e-223
Identity = 337/439 (76.77%), Postives = 377/439 (85.88%), Query Frame = 1 
Query:    1 EAWEPLSAPDFWVIGFVATFQTVSLLVCVHLVRWRNWPPYVIKNVDIVIISTISGVLWNVAKAISSGYIRRERGDILANCGFESFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGMLSLGRLSTPGSRVSERT-SRSSSPH 1314
            E WEPLS PDFWV+GFVATFQTV+LLVC HL+RWR WPPYV KNVD+VIIS         A  + +    R  GDILA C FE FL+WSTLCVHT AFF RVYRMWRILIKHDD+MWHTG+QI+ MSSL LIPVVA WAVP+TG FDEVAN C T++ ST+V+LGM+ LGFL I YLWFVCARQLKWVRKQFNEY++MKRTLLYMTITLASYGV+V++LLAD+L + RRV+ FYP++TTYILLWGSI EPFMMKILGDDEYL SYT GFAQLPSPAQLKASLAEQLSV+QLRDEFRRYIKTKVAQELIDFYLDSLDREEV DFFERQA TMRIVDQYI+EG+ DQVNVSGACRE ILATDVTAFDIF+EARAEVL VMETNF+ DFVTTEGFRRI++AS++EQREL LLR+GGML      +PGS   ++T S S+SPH
Sbjct:    5 EVWEPLSTPDFWVLGFVATFQTVALLVCAHLLRWRKWPPYVTKNVDVVIIS---------AARLPTRQPGRP-GDILAACDFERFLSWSTLCVHTVAFFIRVYRMWRILIKHDDQMWHTGHQILFMSSLSLIPVVATWAVPHTGYFDEVANTCSTTTFSTIVVLGMDALGFLAICYLWFVCARQLKWVRKQFNEYETMKRTLLYMTITLASYGVIVVYLLADNLVLGRRVSVFYPLLTTYILLWGSIREPFMMKILGDDEYLWSYTKGFAQLPSPAQLKASLAEQLSVDQLRDEFRRYIKTKVAQELIDFYLDSLDREEVADFFERQAATMRIVDQYIKEGARDQVNVSGACREKILATDVTAFDIFDEARAEVLAVMETNFRRDFVTTEGFRRILNASKQEQRELRLLRAGGMLLPLGTPSPGSSYEDKTPSSSASPH 433
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB09_9PHAE)

HSP 1 Score: 566 bits (1459), Expect = 1.250e-192
Identity = 320/444 (72.07%), Postives = 334/444 (75.23%), Query Frame = 1 
Query:  247 ESFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHT----------------------------------GYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGMLSLGRLSTPGSRVSERTSRSSSPHNXXXXXXXXXXTAVRDELPPLRSDDCPSTNNLRRFYVESWSSPVDAAHESRGWG 1476
            +SFLAWSTLCVHT AFFFRVYRMWRIL KHDD+MWHT                                    QI+ MSSL LIPVVAAWA+PNTG+FDEV NACFT S+STVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLAD++TVSRR A  YPVMTTYILLW SI EPFM KILG+DEYLGSYTHGFAQLPSPAQLKASLAEQLSV+QLRDEFRRYIKTKVAQELIDF LDSLDREE+ DFFERQAVTMRIVDQYIREGS DQVNVSGA  E ILATDVTA DIF+EARAEVLVVME       V             +   ELSLLRSGGMLSLGRLSTPGSRVS RTSRSSSPHN          TAVRDELPPLRS   P      +       S   AA ESRG G
Sbjct:    4 QSFLAWSTLCVHTVAFFFRVYRMWRILTKHDDQMWHTVREYQLSERFGRLDARRMRHLLCASYISFSMQRHSDQILSMSSLSLIPVVAAWAIPNTGDFDEVENACFTLSVSTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADNVTVSRRAALGYPVMTTYILLWVSIREPFMKKILGNDEYLGSYTHGFAQLPSPAQLKASLAEQLSVDQLRDEFRRYIKTKVAQELIDFNLDSLDREEMADFFERQAVTMRIVDQYIREGSIDQVNVSGAYWEKILATDVTAIDIFDEARAEVLVVMER-----LVDDGRIPPYHGCFREGAAELSLLRSGGMLSLGRLSTPGSRVSARTSRSSSPHNSTAAAAAV--TAVRDELPPLRSPSLPILVTAFKSLSCPMRSAKAAASESRGRG 440
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR9_ECTSI)

HSP 1 Score: 507 bits (1305), Expect = 5.910e-171
Identity = 300/411 (72.99%), Postives = 304/411 (73.97%), Query Frame = 1 
Query:  250 SFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGMLSLGRLSTPGSRVSERTSRSSSPHNXXXXXXXXXX--TAVRDELPPLRSDDCPSTNNLRRFYVESWSSPVDAAHESRGWG 1476
            SFL WSTLCVHTAAFFFRVYRMWRILIKHDDKMW+TG                                                          FVCARQLKWVRKQFNEY+SMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVA FYPVMTTYILLWGSI EPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQ                  VNVSGACRE ILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQ+ELSLLRSGGMLSLGRLSTPGS VSER SRSSSPHN XXXXXXXXX  TAVRDELPPLRS   P      +           AA ESRG G
Sbjct:    2 SFLTWSTLCVHTAAFFFRVYRMWRILIKHDDKMWNTG----------------------------------------------------------FVCARQLKWVRKQFNEYESMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVALFYPVMTTYILLWGSIREPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQ------------------VNVSGACREKILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQQELSLLRSGGMLSLGRLSTPGSCVSERNSRSSSPHNSXXXXXXXXXXXTAVRDELPPLRSPSLPGLMTAFKSPPYPMRIAKTAASESRGRG 336
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: RGS (domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 505 bits (1301), Expect = 2.370e-170
Identity = 260/443 (58.69%), Postives = 309/443 (69.75%), Query Frame = 1 
Query:    1 EAWEPLSAPDFWVIGFVATFQTVSLLVCVHLVRWRNWPPYVIKNVDIVIISTISGVLWNVAKAISSGYIRRERGDILANCGFESFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLW----------------------------FVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGML 1245
            E WEPL+  D+ ++GFV T Q  +L VCVHL+ WR+WPPYV KNVDIVI+ T  G  W ++ A+ +G  RR  GDILA C  E  LAW  LC H  AFF RVYRMWRIL+KHD+ MW   YQIM +SS+ L P + A  VP    FDE  N C T+S S  V L MN +GF  I Y+W                            FVC RQL+WVRKQFNEY++MK TL  +T+ L SY VVV+ +L     + RRVA  YP +TT+ +LWGSI EP + K   D+EYL S+T GF+ LPSPAQLKASLAEQLSVEQLR EFRRYI+TKVAQEL+DFYLDSLDREE+ ++F RQAVTMRIV QYIREG+ DQVN+SG CRE IL+T VTA+DIF+ AR EVL VMETNFQ +FV TEGFRRI++ASE EQRE  LLR+GG L
Sbjct:    5 EVWEPLTMVDYIMLGFVGTVQAFALGVCVHLLSWRHWPPYVTKNVDIVIVMTFGGFGWTISVALDNGLFRRSEGDILAKCYLERLLAWPALCTHMFAFFIRVYRMWRILVKHDENMWPAKYQIMLLSSISLTPALVALLVPGAYVFDETVNLCTTTSTSRTVTLAMNAVGFYTICYIWWRQSYVHVPATGLMRAVCALVSLAAKTRFVCTRQLRWVRKQFNEYETMKWTLSCLTLLLFSYAVVVVVVLDGQHVIVRRVAIVYPALTTHTVLWGSIGEPVLKKWTRDEEYLWSFTKGFSDLPSPAQLKASLAEQLSVEQLRAEFRRYIETKVAQELVDFYLDSLDREEIKEYFARQAVTMRIVAQYIREGAPDQVNISGECREEILSTHVTAYDIFDRARVEVLTVMETNFQREFVETEGFRRIVEASELEQRENRLLRAGGFL 447
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 3.620e-162
Identity = 245/416 (58.89%), Postives = 309/416 (74.28%), Query Frame = 1 
Query:    1 EAWEPLSAPDFWVIGFVATFQTVSLLVCVHLVRWRNWPPYVIKNVDIVIISTISGVLWNVAKAISSGYIRRERGDILANCGFESFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTV-SRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGML 1245
            E WEPL+  D+ ++G V TFQ ++L VCVHL  WRNWPPYV KNVDIVII T +G  W  A A+  G++ R +GD+LA C  E  L WSTLC+H  AFF RVY MWRI+++HD+ +     QI  +SS+ L+P + A  VP    FDE  N+C T+S S  V LGMN +GF  I +LWFVC RQL+ VRKQFNEY+++K TL  + + + SY V V  +L +   V +RR+A  YPV+TT+ LLWGSI EP + K  GD EYL S+T GF+++PSPAQLKASLAEQLSVEQLRDEFR Y++TKVAQEL++FYLDSLDREE+  FF RQA TMRIV +YIR+G+ +QVN+S ACRE I++T+VTA+DIF+ ARAEVL VME  F+++FV TEGFRRI +ASE EQRE  LLR+GG L
Sbjct:    5 ELWEPLTMVDYLMLGIVGTFQALALGVCVHLFLWRNWPPYVTKNVDIVIIMTFAGFAWTFANALDVGFVHRSKGDLLAECSLEKLLTWSTLCIHMFAFFIRVYLMWRIMVRHDEDVGSPKGQIFLLSSISLVPPLIALLVPGAYVFDETINSCNTTSTSRTVGLGMNAVGFYTICFLWFVCGRQLRRVRKQFNEYEAIKWTLSCLILLVLSYTVGVNIILDNKHHVLARRLAIVYPVLTTHTLLWGSIGEPLLKKWEGDREYLWSFTRGFSEMPSPAQLKASLAEQLSVEQLRDEFRGYMRTKVAQELVNFYLDSLDREEIHGFFGRQAATMRIVARYIRDGAPEQVNISEACREEIVSTNVTAYDIFDRARAEVLAVMEAEFKAEFVETEGFRRIANASELEQREKRLLRAGGFL 420
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: Similar (to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 475 bits (1223), Expect = 1.430e-158
Identity = 246/423 (58.16%), Postives = 292/423 (69.03%), Query Frame = 1 
Query:    1 EAWEPLSAPDFWVIGFVATFQTVSLLVCVHLVRWRNWPPYVIKNVDIVIISTISGVLWNVAKAISSGYIRRERGDILANCGFESFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGMLSLGRLSTP 1269
            E WEPL+  D+ ++G V  FQ  +L VC+HL+RWR WPPYV KNVDIVII T++G  W  A A+ +G I R  GD LANC FE   +WSTL  H  +F  RVYRMWRILIKHDD MW                                            V+L MN LGF  I YLWFVCARQL+WVRKQFNEY++MK TL  +T+ L SY  VV  +L +     RRVA  YPV+TTY LLWGSI EP   K+ GD EYL S+T GF+++PSPAQLKASLAEQLSV+QLR EFR+Y++T VAQEL+DFYLDSLDREE+  +F RQA TMRIV+QYIREGS DQVN+SG CRE IL+TDVTA+DIF+ ARAEVL VMETNFQ DF+ TEGFRRI+DASE EQR++ LLR+ G+L     +TP
Sbjct:    5 EPWEPLTFVDYVMLGMVGAFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALETGIIERSEGDFLANCYFEVIFSWSTLLAHMMSFAVRVYRMWRILIKHDDHMWPAKN----------------------------------------VVLAMNALGFYAICYLWFVCARQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIVLNNQHVYVRRVAIVYPVLTTYTLLWGSIGEPIKRKLAGDTEYLYSFTKGFSEMPSPAQLKASLAEQLSVQQLRVEFRKYVETMVAQELVDFYLDSLDREEIKGYFGRQAATMRIVEQYIREGSPDQVNISGECREEILSTDVTAYDIFDRARAEVLAVMETNFQRDFIETEGFRRIVDASELEQRQMRLLRAEGVLVPSASTTP 387
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: Similar (to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 468 bits (1204), Expect = 1.610e-156
Identity = 239/403 (59.31%), Postives = 292/403 (72.46%), Query Frame = 1 
Query:   37 VIGFVATFQTVSLLVCVHLVRWRNWPPYVIKNVDIVIISTISGVLWNVAKAISSGYIRRERGDILANCGFESFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGML 1245
            ++G V TFQ  +L VC+HL+RWR WPPYV KNVDIVII T++G  W  A A+ SG I R  GD LA C  ++ L+WSTL VH  +F  RVYRMWRILIKHDD MW   YQ+M MSS+ L P++AA  VP+   FDE  N+C T++ S  V+L MN LGF +I YLWFVC RQL+WVRKQFNEY++MK TL  +T+ L SY  VV  +L +   + RRVA  YPV++TY LLWGS+ EP + K  GD+ YL S+T GF+++PSPAQLKASLAEQLSVEQLR EFRRYI+TKVAQEL+DFYLDSLDREE+  +F RQA TMRIV+QYIREGS DQVN+SG CRE IL+TDVTA+DIF+ ARAEVL VME               + D   KE+  + L+R+   L
Sbjct:    1 MLGMVGTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALQSGLIPRNEGDFLAICYIDTTLSWSTLAVHIMSFAVRVYRMWRILIKHDDSMWPAKYQVMVMSSISLGPLLAAVLVPDLHFFDETVNSCNTTTDSRNVVLAMNALGFYLICYLWFVCTRQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIILNNQHVLVRRVAIVYPVLSTYTLLWGSVGEPVVKKFTGDEGYLWSFTKGFSEMPSPAQLKASLAEQLSVEQLRVEFRRYIETKVAQELVDFYLDSLDREEIKGYFGRQAATMRIVEQYIREGSPDQVNISGECREEILSTDVTAYDIFDRARAEVLAVMEAT-------------LTDLGAKEETMIVLVRTSTSL 390
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: Signal (transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 1.290e-136
Identity = 229/415 (55.18%), Postives = 287/415 (69.16%), Query Frame = 1 
Query:    1 EAWEPLSAPDFWVIGFVATFQTVSLLVCVHLVRWRNWPPYVIKNVDIVIISTISGVLWNVAKAISSGYIRRERGDILANCGFESFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGML 1245
            E WEPL+  D+ ++G V TFQ  +L VC+HL+RWR WPPYV KNVDIVII T +G  W  A A+  G I+R   D LANC FES          T A      R++R+             Q++ +SS  LIP++ A   P+   FDE AN+C TS+ +T V+LGM+  GF MI  LW VCARQL+WVRKQFNEY++MK TL  +TI L SY +VV  +L       RRVA          + W    EPF MK+ G+ EYL S+T GF+++PSPAQLKA+LA+QLSVEQLR EFRRYI+ KVA EL+DFYLDSLDREE+ ++F RQA TMRIVDQYIREG+ DQVN+SG CR+ IL+T VTA+DIF+ ARAEVL VMETNFQ+DFV TEGFRRI++A+E EQR++ LL++ G L
Sbjct:    5 EPWEPLAFVDYLMLGIVCTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTFAGFAWTFAAAVGHGLIQRSEDDFLANCYFES----------TDAVPACPTRLFRV-------------QVLLLSSTGLIPLLLAILDPDLFFFDETANSCGTSTGATRVVLGMDAFGFSMILCLWLVCARQLRWVRKQFNEYEAMKWTLSCLTILLFSYAIVVAIILDGHHCYVRRVA----------IAW----EPFKMKLTGNAEYLYSFTQGFSEMPSPAQLKANLAQQLSVEQLRVEFRRYIEAKVAHELVDFYLDSLDREEIMEYFARQAATMRIVDQYIREGAPDQVNISGECRDEILSTHVTAYDIFDRARAEVLDVMETNFQTDFVETEGFRRIVNAAELEQRQIRLLQAEGFL 382
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE)

HSP 1 Score: 394 bits (1012), Expect = 1.270e-127
Identity = 209/336 (62.20%), Postives = 249/336 (74.11%), Query Frame = 1 
Query:  313 MWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEPFMMKILGDDEYLGSYTHGFAQLPSPAQ-----------------LKASLAEQLSVEQLRDEFRRYIKTKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSGACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASEKEQRELSLLRSGGMLSLGRLSTP 1269
            MWRILIKHDD MW   YQ++ MSS+ L P++AA  VP+   FDE  N+C T++ S  V+L MN LGF +I YLWFVCARQL+WVRKQFNEY++MK TL  +T+ L SY  VV  +L +     RRVA  YPV+TTY LLWGSI EP   K+ GD EYL S+T GF+++PSPAQ                 LKASLAEQLSV+QLR EFRRY++T VAQEL+DFYLDSLDREE+  +F RQA TMRIV+QYIREG  DQVN+SG CRE IL+TDVTA+DIF+ ARAEVL VMETNFQ DFV TEGFRRI+DASE EQRE+ LLR+ G+L     +TP
Sbjct:    1 MWRILIKHDDHMWPAKYQVLLMSSISLGPLLAAILVPDLHFFDETVNSCNTTTDSRNVVLAMNALGFYVICYLWFVCARQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIILNNRHVYVRRVAIVYPVLTTYTLLWGSIGEPIKRKLGGDTEYLNSFTKGFSEMPSPAQVRKLPPAARDSSNDLVLLKASLAEQLSVQQLRVEFRRYVETMVAQELVDFYLDSLDREEIKGYFARQAATMRIVEQYIREGGPDQVNISGECREEILSTDVTAYDIFDRARAEVLAVMETNFQRDFVETEGFRRIVDASELEQREMRLLRAEGVLVPSASTTP 336
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR8_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 1.440e-126
Identity = 179/233 (76.82%), Postives = 202/233 (86.70%), Query Frame = 1 
Query:    1 EAWEPLSAPDFWVIGFVATFQTVSLLVCVHLVRWRNWPPYVIKNVDIVIISTISGVLWNVAKAISSGYIRRERGDILANCGFESFLAWSTLCVHTAAFFFRVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVANACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKRTLLYMTITLASYGVVVLFLLADDLTVSRRVAFF 699
            E WEPLS PDFWV+GFVATFQ V+LLVC HL+RWR WPPYV KNVD+VIIST SGVLWNV+  ISSGYIRRE GDILA C FE FL+WSTLCVHT +FF RVYR WRILIKHDDKMWHTG+QI+ MSSL LIPVVA WAVP+TG FDE AN C T++ S +V+LGM+ LGFL I YLWFVCARQLKWVRKQFNEY++MKRTLLYMT+TLASYGV+V++LLADDL + RRV+ F
Sbjct:    6 EVWEPLSTPDFWVLGFVATFQAVALLVCAHLLRWRKWPPYVTKNVDVVIISTFSGVLWNVSMIISSGYIRREAGDILAACDFERFLSWSTLCVHTVSFFIRVYRTWRILIKHDDKMWHTGHQILFMSSLSLIPVVATWAVPHTGYFDEAANTCSTTTFSAIVVLGMDALGFLAICYLWFVCARQLKWVRKQFNEYETMKRTLLYMTVTLASYGVIVVYLLADDLVLGRRVSIF 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1062.566.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RGS2.150e-22376.77domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS1.250e-19272.07domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized5.910e-17172.99protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RGS2.370e-17058.69domain-containing protein n=3 Tax=Ectocarpus TaxID... [more]
RGS3.620e-16258.89domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Similar1.430e-15858.16to regulator of G-protein signaling 16 n=1 Tax=Ect... [more]
Similar1.610e-15659.31to regulator of G-protein signaling 16 n=1 Tax=Ect... [more]
Signal1.290e-13655.18transducer, putative n=1 Tax=Ectocarpus siliculosu... [more]
RGS1.270e-12762.20domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.440e-12676.82protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1062contigEcto-sp9_F_contig1062:3014..11187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score479.6
Seed ortholog evalue1.8e-132
Seed eggNOG ortholog2880.D7FTZ7
Preferred nameRGS1
KEGG koko:K16449
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-20_003190.1
Exons12
Model size2166
Cds size1497
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928281.1619236-UTR-Ecto-sp9_F_contig1062:3013..35511622928281.1619236-UTR-Ecto-sp9_F_contig1062:3013..3551Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1062 3014..3551 -
1692277819.4172165-UTR-Ecto-sp9_F_contig1062:3013..35511692277819.4172165-UTR-Ecto-sp9_F_contig1062:3013..3551Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1062 3014..3551 -
1622928281.1859248-UTR-Ecto-sp9_F_contig1062:3612..37431622928281.1859248-UTR-Ecto-sp9_F_contig1062:3612..3743Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1062 3613..3743 -
1692277819.4319649-UTR-Ecto-sp9_F_contig1062:3612..37431692277819.4319649-UTR-Ecto-sp9_F_contig1062:3612..3743Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1062 3613..3743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928281.19784-CDS-Ecto-sp9_F_contig1062:3743..38611622928281.19784-CDS-Ecto-sp9_F_contig1062:3743..3861Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 3744..3861 -
1692277819.4414966-CDS-Ecto-sp9_F_contig1062:3743..38611692277819.4414966-CDS-Ecto-sp9_F_contig1062:3743..3861Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 3744..3861 -
1622928281.216056-CDS-Ecto-sp9_F_contig1062:4641..48831622928281.216056-CDS-Ecto-sp9_F_contig1062:4641..4883Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 4642..4883 -
1692277819.4510808-CDS-Ecto-sp9_F_contig1062:4641..48831692277819.4510808-CDS-Ecto-sp9_F_contig1062:4641..4883Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 4642..4883 -
1622928281.2301326-CDS-Ecto-sp9_F_contig1062:5613..57151622928281.2301326-CDS-Ecto-sp9_F_contig1062:5613..5715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 5614..5715 -
1692277819.4682183-CDS-Ecto-sp9_F_contig1062:5613..57151692277819.4682183-CDS-Ecto-sp9_F_contig1062:5613..5715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 5614..5715 -
1622928281.2469683-CDS-Ecto-sp9_F_contig1062:6300..63541622928281.2469683-CDS-Ecto-sp9_F_contig1062:6300..6354Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 6301..6354 -
1692277819.484642-CDS-Ecto-sp9_F_contig1062:6300..63541692277819.484642-CDS-Ecto-sp9_F_contig1062:6300..6354Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 6301..6354 -
1622928281.2623744-CDS-Ecto-sp9_F_contig1062:7215..73651622928281.2623744-CDS-Ecto-sp9_F_contig1062:7215..7365Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 7216..7365 -
1692277819.4945781-CDS-Ecto-sp9_F_contig1062:7215..73651692277819.4945781-CDS-Ecto-sp9_F_contig1062:7215..7365Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 7216..7365 -
1622928281.2759402-CDS-Ecto-sp9_F_contig1062:7705..78361622928281.2759402-CDS-Ecto-sp9_F_contig1062:7705..7836Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 7706..7836 -
1692277819.5063908-CDS-Ecto-sp9_F_contig1062:7705..78361692277819.5063908-CDS-Ecto-sp9_F_contig1062:7705..7836Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 7706..7836 -
1622928281.2875094-CDS-Ecto-sp9_F_contig1062:8566..87331622928281.2875094-CDS-Ecto-sp9_F_contig1062:8566..8733Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 8567..8733 -
1692277819.5143156-CDS-Ecto-sp9_F_contig1062:8566..87331692277819.5143156-CDS-Ecto-sp9_F_contig1062:8566..8733Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 8567..8733 -
1622928281.297936-CDS-Ecto-sp9_F_contig1062:8958..91321622928281.297936-CDS-Ecto-sp9_F_contig1062:8958..9132Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 8959..9132 -
1692277819.522674-CDS-Ecto-sp9_F_contig1062:8958..91321692277819.522674-CDS-Ecto-sp9_F_contig1062:8958..9132Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 8959..9132 -
1622928281.3149066-CDS-Ecto-sp9_F_contig1062:9622..97321622928281.3149066-CDS-Ecto-sp9_F_contig1062:9622..9732Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 9623..9732 -
1692277819.5322785-CDS-Ecto-sp9_F_contig1062:9622..97321692277819.5322785-CDS-Ecto-sp9_F_contig1062:9622..9732Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 9623..9732 -
1622928281.325303-CDS-Ecto-sp9_F_contig1062:10589..106851622928281.325303-CDS-Ecto-sp9_F_contig1062:10589..10685Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 10590..10685 -
1692277819.5415742-CDS-Ecto-sp9_F_contig1062:10589..106851692277819.5415742-CDS-Ecto-sp9_F_contig1062:10589..10685Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 10590..10685 -
1622928281.3354883-CDS-Ecto-sp9_F_contig1062:11034..111871622928281.3354883-CDS-Ecto-sp9_F_contig1062:11034..11187Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 11035..11187 -
1692277819.5506306-CDS-Ecto-sp9_F_contig1062:11034..111871692277819.5506306-CDS-Ecto-sp9_F_contig1062:11034..11187Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1062 11035..11187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1062.566.1prot_Ecto-sp9_F_contig1062.566.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1062 3744..11187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1062.566.1

>prot_Ecto-sp9_F_contig1062.566.1 ID=prot_Ecto-sp9_F_contig1062.566.1|Name=mRNA_Ecto-sp9_F_contig1062.566.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=499bp
EAWEPLSAPDFWVIGFVATFQTVSLLVCVHLVRWRNWPPYVIKNVDIVII
STISGVLWNVAKAISSGYIRRERGDILANCGFESFLAWSTLCVHTAAFFF
RVYRMWRILIKHDDKMWHTGYQIMCMSSLCLIPVVAAWAVPNTGNFDEVA
NACFTSSISTVVILGMNGLGFLMIFYLWFVCARQLKWVRKQFNEYDSMKR
TLLYMTITLASYGVVVLFLLADDLTVSRRVAFFYPVMTTYILLWGSICEP
FMMKILGDDEYLGSYTHGFAQLPSPAQLKASLAEQLSVEQLRDEFRRYIK
TKVAQELIDFYLDSLDREEVTDFFERQAVTMRIVDQYIREGSSDQVNVSG
ACRETILATDVTAFDIFEEARAEVLVVMETNFQSDFVTTEGFRRIMDASE
KEQRELSLLRSGGMLSLGRLSTPGSRVSERTSRSSSPHNSAAAAAAAAAT
AVRDELPPLRSDDCPSTNNLRRFYVESWSSPVDAAHESRGWGGSEGGG*
back to top

mRNA from alignment at Ecto-sp9_F_contig1062:3014..11187-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1062.566.1 ID=mRNA_Ecto-sp9_F_contig1062.566.1|Name=mRNA_Ecto-sp9_F_contig1062.566.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8174bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1062:3014..11187- (Ectocarpus species9 EcSCA_722f female)
GAAGCATGGGAGCCCCTTTCAGCCCCGGATTTCTGGGTCATCGGTTTCGT
GGCCACCTTCCAGACGGTGTCTCTCTTGGTGTGCGTGCACCTGGTACGGT
GGCGCAATTGGCCTCCCTACGTCATCAAGAACGTCGACATTGTCATCATC
TCGGTGAAGTTGTACTTTTTTAGTTGGGGGTGGGGGGGGTCGCCGGCGGT
GGTGGAACATCACCGGGCATTGCCATGTTGGGTAGTGGAAGCGGGGAGGT
GGAAGATGTTGCGCTTGTCATGGTTCCACCACTCCTTGTTGCGGATGATG
ATGTCGTGCGGTGCCTGGAACGTTTTACCATTTGGTATTGCCCCATTACC
GCACGTCGTGGCAGTCGCTTGCCTGCCGCCCTGACTGAACCGCTGTGTAG
CTGTTATTCGTGCCCTCTTTTGACGACCTCGCGTCTCGTGATGTCTTGAT
CCTCTCTTGCCTTGATCCTACTGGGGGGGAAATCTCTTCTTTCCATGAGC
AGACAATATCAGGGGTGCTATGGAATGTCGCGAAGGCTATTTCCTCCGGG
TACATCAGGCGGGAAAGAGGGGACATTCTGGCAAACTGCGGATTTGAGGT
ACATCAGCTTCAACGATTAAACCCTGTTTCATATCGAAGTATTCGAAATT
GCTTTGATTTTGACGTCCGGGTGTGTATATTGCGAAGCCAAAAAGACCAC
CACCTTTGCTGGTCGCCCCGGGAGTCTAGTTGATATCCTCGGAAACATTC
TAGTGGCCAGGGTCAGGTATTCGAATCCCGGCGCAAGCGAGCTTGTATGG
CAGATTGAGTTTTCCTCTCGCTTCCGTGTCTGGCGTGGGTGGAAAGCGCT
GCATAGTTCGTGTGTGCACAGAGGGAAGAGAGTGCCGCACTCTTCTCGCA
TTGAAAATCGAAGGCGAAGCACCGCAGGAGGGGTGAGTAGGGGGGCTCAG
GGAGAGGAACCCTTCTGTGTGACCACCGATTGGAGCAAACGGCACAAGTG
CTGTGAGCGCTGATTGGAAGTGAAGGCAAACAAAAAAACACCTTTGTTTG
CACCACCCCTCGGTGTGTTCTATCAATATATGACGTAAGGGCATGGTTCC
CGCGAAATTATTGGGTGCGACTTCGATGGGGATGCCTCACCATTGAGGCT
CTGCCACCCCCTCAGCCTGCTATTTTTGAGGTGCTGCAAGTATGTTTTTG
GTTACCTTCAGAGCGTGTCGCGCAGCCGTGGCGAAAGGTCGAGAACGGGT
GTAAAGTGCCCTTCCATTCGTGGCATGATAGAAACACCGTATGGATGGTT
CGTCCTATAGCCCACGCCTCACCGTTGCCATTCTTTTTTCCCTTGTTATT
GCTGCTGCCTCCACCGCCGCCGTAGTTGCTGATACGCTTTTCCCGCGTGC
TGGCCTTTTCGTGGTTTGCTTGTCGCCGTCGTTGCTGGTGCGGGCGGTTC
CGCAGAGCTTTCTCGCGTGGTCGACGCTGTGTGTCCACACGGCGGCGTTC
TTCTTCCGGGTGTACCGGATGTGGAGGATCCTCATCAAGCACGACGACAA
GATGTGGCACACAGGGTGAGTCAGTCCTCTTTGGCATCTGTTCACTCGGG
GACACAAACATGGGGGTGGTTTGATAGTGACCCTCGAGCATTGGGCAAGA
GGGGGGCACGCACGTCAGTTTTCTGGACGTACCTGTGTGTTCACGCGCAG
GTTAATGCTTCCCTAGCGTGTGCTGCTTGCCCCCTTGTTATGTTTTTGGA
TAACCATCGAAACATGGCCCGCAGGCAGTATTTCTTGTGGACAGGGTGCC
CTAATGTTTGTTGTGTACGCCGAGAACTTTGGCAGTCGAGATTTGGACGA
CGTCCGACGATCGACCCCCCCGTCTATCTCAAATTTTGCGCGAATGTCTT
CCCAAAGCGAATGCCTTTACGTCACTTGTTGAATACTATCCTGCCCCCCG
AGTACTAGAGTATCAGTTATCGGAGAGGTTCGCCCGCCCCGACGCTCGTC
GCATGCGACATCTCCGTTGTGCGTCCTGCGTTTCCTTCTCTATGCAACGG
CACAGCTATCAGATCATGTGCATGTCAAGTCTATGCCTCATCCCCGTGGT
GGCGGCGTGGGCAGTTCCCAACACCGGAAACTTCGACGAGGTGGCGAACG
CATGTTTCACTTCGTCTATCTCCACCGTTGTCATCCTCGGGATGAACGGG
CTCGGGTTTCTCATGATCTTCTACCTTTGGTGAGGGGAGGAGAGACTCAC
AAGCTTGGGTAGGCTATGGCTGGTGGCGTGTGTTTGGTGGTGGTGGTCGC
GGTGGTGGTGATATAGCGGGGTATGGTGGTCGTGGTGCTGAATAGCCACG
CGGAAGTGTTTGGAGCCGGTTCCGTACCTGCTGTCCGAAGGCTTGATGAG
ATCGATTCCGCCGCCGCCCATGATGTGGTGCGGGTGGAATTGTCGAACGA
ACAGGTTCGTGTGCGCCCGCCAGCTCAAGTGGGTCCGGAAGCAGTTTAAC
GAGTACGACTCGATGAAGCGCACTCTGCTGTACATGACCATCACCCTGGC
GAGCTACGGCGTGGTCGTCTTGTTTCTGCTGGCAGATGACCTTACAGTGT
CGCGGCGAGTGGCCTTCTTCTGTGAGTAAATTTTTCATTTCCTTGTCTTG
TTTTCGCGGCATCACCTGATATTGGAGGTGCATGTTTCGGTGAGGATACT
CCTGCAGCACCTCCTCCTCTCTCCTCAAAACCCAGCTCCTCGATTCTCCA
GGAAAACAACACCCCTCACGAGCTGCAAGCTATCCACGTCCTCATTCTGT
TTGTGGCGCAGCGACAACGAACCCGTATGGACAACTTTGGGCCATTGGTC
CCTCCGGTTCTGATAGTATCGGCGAAGAACAGTTCTTGGGGCAGATATGT
TGATCGTTGGGCGAGAGTGAGAGTTGGGCACCGTGTCGGGTTTTTCATGC
TTGGGGAAGGCACTTCAGCCAGGGGGCGAGAGGTTTGTGTGTCCCTGAAA
CCACGGGGCCGAAGGTTGTGCATCCCTTGGCAACTGGGAGTCTCCACCCC
CGGGGGGTGTTCACTCATTTCACGTGCATCGTTTGGGAGCTAGCACCAAG
AGTCGTGCATTCTGCAGAAGCGGCATACCTGGTCAGAGAAGAATGTCTGG
CCGTAGAGGCCGGAAAGGGAGCCCGGAGGGTTCCATCCCGAAGGACCCTT
GGCCAGGGGATAGGCCGGTGGCTGTCCCACGTCCCCCTTTCCGTCTCAAC
GCTGACGTGAATCGAACATGTTGGCCACCACTGGCCACCCAACCTCTACT
GCCGCCCCACACCATTCTCCACGAACCGACGGGTTGCCAATCGTGGCCCA
GATCCGGTGATGACGACATACATCCTGCTGTGGGGCTCCATTTGCGAGCC
GTTCATGATGAAGATTCTGGGAGACGACGAGTACCTCGGGTCCTACACGC
ACGGATTTGCCCAGCTTCCTTCGCCGGCCCAGGTGCGGCAACTGTTGCTG
CCGTCGTCGTCGTCGTCGTTGTTGACGTTGTTGTTGTCGTTGTTGTTGTC
GTTGCTGTTGTTACGTTGTTACTACTGCTGTTGTTGCTGTTACTAATGTC
TCCACGTGTTGTCATGGCTTCCCGGCGTGGGACGACACAGTAGCATGACA
CAGAACTGCTCAACAAGTTCAACATAGATGGTGAACAGTGCCGAGCTCCC
TGACAGATACATTCCTCCCACTCACCTCTCTGTCTGTCTGTCTGTCTGTC
TGTCCGTCCGTTGGCTGGCTGGCTGGCTGGCTGGGTGTCTCTTTGTTTTA
TTCATTATCGCCAAACTTTCAGCTGAAGGCCAGCCTGGCAGAACAGCTTT
CCGTGGAACAGCTGCGGGACGAGTTCCGGCGGTACATCAAGACCAAGGTG
GCCCAGGAACTGATAGACTTCTACCTGGACTCGCTAGACCGGGAAGAGGT
GACAGATTTTTTCGAGAGACAGGTAGGAACAAATCCAGGGGGTGGGGGGG
GGGGGATCGCAGCACCGTTCCTAGCGCCGTTCGGAATAAATGTCGTAGTC
TACCTGGGTTGATTTGATAAGTCGGGCAGATGTTACGGTTGACTTGGAGG
GCGATATTTGTCTCGATAGTGGGTGAGATGTCCCACGATTCTGCGTTATA
ATTCTCAGTTTCAATCAAAACTGGGCCTTGTTTTGGCGCGGAGAGAACAC
CACAACGGACTCCGCCCTTGTCACGACCTCCTCGATCAAGCGCGAAAGGC
ACGTTACATGCACTCGAAGAGGTGGTTGGTTAGTTTGTGCATGTTTGTTT
TTTTCCCACGAGCTTTGTCGCAAATATTGCGGCAGGTGTAGAAAATACAA
CGCTTTGGAATGAGGGAAGTGCCGAGAAGGAAAGCAAAAGAACCTGTCTG
AGCACCAAGACAAAGCTGCTTGTGTCGTCTGTTTCCAGGAGCAACAGCCA
GCATCGAATCGAGTCATACGTACGCTCGAGTTGTGGGCGGCGGCGGTGCT
TGTTTGTTCTTCACTCTCGACGAAGAATACAAAATAGTCCCAGCTTGTCT
TGGCGGAAGACAAGGGACGGGGATATAATATAGATAGTCTACTGATGGCA
AGTTTCGTCGTTTTCCCTGCCATGTTTAAGGCAGTGGTTTGCGAGTTTTC
CACCTCTCTCTCCAAGCAACACCTTGTCGGGAGAAAGACAAACTTGGTAC
ACACACCGGCGCTTGCGGTGGGGTTCCATCACTTGGACTTGGAGCAATCC
TCCGCTCACGTGAACGTCTCCTTGCTCGTTCGTTCTTCTTTTCCTTCTGT
TGTGTTTTTTTTGTCTTCTTGCTTTGTGCTTAGGCGGTCACCATGCGCAT
CGTGGACCAGTACATCAGGGAGGGATCCAGTGACCAAGTAGGAGCTGCGA
AACCCAACAAAACTGGCTTGTGACGGCGGGGTAGTAGCAACGGGAAAGGC
GATAATGTGCTAGCCGACACCTTTGCAATCCGCAGACCAGCACCACAGCT
TTCGTTTCGTCATGGTTTTCATCCGTATATTGATCTGAGGCTCGTTCTTG
AGGTGTGGGCCGAAAAACCAGTGGTGTGTGTTTGTGGTGCTTGGGTACGA
TAATACCCGACCTGGGCTGTATGTGAGTGAGGGGTATGTGTGCGGTTGAG
GGTCTAAGTGCGGCCCCCCCAGAGAGCGTAGCGTACGCAGGTGTGCTTCC
TACAGACATGCGCGTGTGACCCACTTGCGTGTAGGAGGAGCATTGCTTGT
TCATGCATAATAATGATTGCTCTTCTTCGTCGGTCGTTCCTGGGATAACA
TACAGTAGTACCCATGCTCAACACGAACCGGTGAGGGCCGCGGTGCCTCA
AACAGCGTGTGAGGACATATTTATCTGGAGGACGCATAATCATGTGTGAC
AAGCGTCGTGTATGGTTTGTTGGTACGATCCTCTATCATGTTGCTTTTTG
CTCGTGTGCGGAATCGCCTCAGGTTAACGTATCCGGAGCATGCCGGGAGA
CGATTCTCGCGACGGACGTGACTGCATTCGATATCTTCGAAGAGGCGAGG
GCGGAGGTCTTGGTGGTCATGGAGGTGATGGACAAACACCGCACCGTTCG
TGGAAATATTGAACCGCTCTTGAGGCAGAAAATAGTGCTTGCTTGTCTAC
TTCAACGTTCATGTTTTCTATGCTCAGGAGCAGCGTTCACGTTGTAGTCT
TGTGTGGACGCCGGTGCGTGTGCGTGCGTCCACAAGCCTCCTCCTGGCGG
CGGCTTTTGGAGGATAGGATAGGTTCGTGCATGACCAGCGTGTTGATGCA
ATTTGTGTGGGTTACATGCAACCAGCAACGTGTGCTTATCACATGTGGTT
TCCCCAAGCCTTTTTCACACGGCTTGGCGGCGATTTTGTGTCACGCTCAC
GCCGCCTGATTTCTCAAATGCCTACCTATCCCTGTCTCTCTCCTGTTCAA
GAGTCCACAAGCTGGCCGCACCGGTGGCTCACATGAGAAACTATCCCATG
AAAAGAGACCGATATTTACCATCGAGTCGCGTGAAACATTTGCCGGCGGT
ATATTCGTGACTGCGGTTGCACATTCTTTCGGCCATCCCCGATCCCCCCA
CCGTATTTATCTGGTCGGAACTCTAACTGTACCATGCCGATAAAGCATCC
TTTCGCAGGCGCGCAATGCTTGCGATGTTAGGCTCAAAGTAAGGACGATC
CGCTCATACGAGGTCATTCAGCATCACCCCCACCCCCACCACTACGCACC
GCCTGCAAATATGAAATCGCCACCCCCTTGCGCAACACGACACAAAACAT
ACAGACCAACTTCCAGAGCGACTTTGTGACGACGGAAGGATTCCGCCGCA
TCATGGACGCTTCCGAGAAGGAGCAGCGGGAGCTGAGCCTCCTCCGTTCG
GGGGGCATGCTATCTCTGGGGAGGCTGTCGACGCCCGGATCACGTGTATC
GGAGAGGACTTCCCGTTCGTCCTCTCCGCACAACTCCGCCGCCGCCGCCG
CCGCCGCCGCCGCAACTGCTGTCCGAGACGAGCTTCCGCCGCTTCGGTCC
CCGCCGCTCCCCGGCCTCGTGACGGCCTTCAAGAGCCTCCCGCACCCGAT
GAGGAGCGCCAAGACCGCCGCTTCCGAGTCGCGGGGCCGCGGGACGGCGA
GAAGGAGCGTGGGCGAGCGCATCGGCAGGGCTGCGAGAATCTCGGCCGAG
ACCCTCCTGGCCGGTGGCACCGACAGCGGGGAGCACCAGGAGGCTCGCCC
GGAGGGGTCAGTCGCAGGGAAGAGGGCCGCCGTCGCCCCCGTCACACGTG
GGGGTAGTTTTGAGGAAGAGGGAAATGATGAGGATACCGGGCTTGCCCTA
GCGCGCAAGATGGAGGCGGATGCGTTGACAATAGCGGTGGCAGGGCGGCG
CGTGGTCCCAAAGGAAACCGACGGTGCCGTTGTTGGTGGTGAAAGCACTG
CGTATTGGGACGAGGAAATGGCGGAGCAGGCGGTAAAAAAGGCGATGACG
TCGGTTAGGGTGTAACCGTTTGGCCCGCACCGTTTTTCTTGCCACGTGCG
ATTGACGATGTGGGTCGCGATGGTGCTGGTTGTGCAAGCGCGGCCGCAGG
CCACCGTGGGATAATGCGGCGGCAATCGTTCTCATGGTCTAGAGGGTCGT
GGCAACACCGGCGGCGGCAATAGCAGGAGAATGCACATTGGCCGGACATG
GTCCCACGCCTCGCGCTAGTAGCCCAGCGGAAGCCTCCTTGTTGGTTTTT
TCGGTCTCGGTGTCGGCGTCATGGGCCAGCGAGAAGCAGCTAATCCTAAC
CCTTACCCTAACTCCAAGCTAGCGAGCTCAGATGACTGCCCCAGCACCAA
CAACCTACGCCGGTTTTACGTCGAATCTTGGTCCAGCCCCGTCGACGCCG
CGCACGAAAGCAGAGGATGGGGCGGCAGCGAAGGCGGCGGCTGAGAAGCA
GCACACGGGCTGTTTGTTGTGGGTATTGGCGGCAAACCTGGGGTTGTTCC
GCCGGCAGAAGCCACAGGCGAAGACGACGCGGGAGCGTAGCAAGAAGGCA
GCCAGAGGAGCATCCGCTTCGCGGGGTGACGCGTTCTTGTGTCAATCCCT
AGTGCCACCGGGGACACGACAACTTGAGCGGTGGAGGAGGGGCCCCGCGA
GTTGAAATCGCGGAAGAGGAGGGCAGACCCGCGGGCCCCCCGGCGAAACC
TGGTAGCGGCGCCGTTGATTCCGCCACGAACGAACCGCGGCAGCCGCCGT
CGTCACGGGTTCGCCGGGCAGAGGAAAAGCACCACTCGCGAGAGCGGGGC
ACACACGAGCAACCGATTGGGCTCCGGCTGGCGGCAGACGCCAGCGTGCT
GGCGGTCCGGGACGGCGAGAACGGCGTCCGCGGAGAAACTACCACCGGCG
GCGACCAAATCTCGAGAGAGGTGGGCGTTGAGACGCTGGACATGCTCTCA
TCCTTGTCCACGGATGAGAGTCCAGACTGGGTGCGGTTCGCAGACCCGAT
CAGGAACGGATCGGGGCCAGCGGAGGGCGAGGGCGCGCAGCAGGGGGGGG
TGGCGCAAGCTGGACAAGGGAAGTGGACAAAGAATTGAGTGTTTCTGACG
GTGGGTCCATGGAGGAGGGGCGTCGGAGCTGGGGCCCGGGTGGGAGCAGC
TGGAGCAAGCACCCGAAACGAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1062:3014..11187-

>mRNA_Ecto-sp9_F_contig1062.566.1 ID=mRNA_Ecto-sp9_F_contig1062.566.1|Name=mRNA_Ecto-sp9_F_contig1062.566.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2994bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1062:3014..11187- (Ectocarpus species9 EcSCA_722f female)
GAAGCATGGGAGCCCCTTTCAGCCCCGGATTTCTGGGTCATCGGTTTCGT
GGCCACCTTCCAGACGGTGTCTCTCTTGGTGTGCGTGCACCTGGTACGGT
GGCGCAATTGGCCTCCCTACGTCATCAAGAACGTCGACATTGTCATCATC
TCGGAAGCATGGGAGCCCCTTTCAGCCCCGGATTTCTGGGTCATCGGTTT
CGTGGCCACCTTCCAGACGGTGTCTCTCTTGGTGTGCGTGCACCTGGTAC
GGTGGCGCAATTGGCCTCCCTACGTCATCAAGAACGTCGACATTGTCATC
ATCTCGACAATATCAGGGGTGCTATGGAATGTCGCGAAGGCTATTTCCTC
CGGGTACATCAGGCGGGAAAGAGGGGACATTCTGGCAAACTGCGGATTTG
AGACAATATCAGGGGTGCTATGGAATGTCGCGAAGGCTATTTCCTCCGGG
TACATCAGGCGGGAAAGAGGGGACATTCTGGCAAACTGCGGATTTGAGAG
CTTTCTCGCGTGGTCGACGCTGTGTGTCCACACGGCGGCGTTCTTCTTCC
GGGTGTACCGGATGTGGAGGATCCTCATCAAGCACGACGACAAGATGTGG
CACACAGGAGCTTTCTCGCGTGGTCGACGCTGTGTGTCCACACGGCGGCG
TTCTTCTTCCGGGTGTACCGGATGTGGAGGATCCTCATCAAGCACGACGA
CAAGATGTGGCACACAGGCTATCAGATCATGTGCATGTCAAGTCTATGCC
TCATCCCCGTGGTGGCGGCGTGGGCAGTTCCCAACACCGGAAACTTCGAC
GAGGTGGCGAACGCATGTTTCACTTCGTCTATCTCCACCGTTGTCATCCT
CGGGATGAACGGGCTCGGGTTTCTCATGATCTTCTACCTTTGCTATCAGA
TCATGTGCATGTCAAGTCTATGCCTCATCCCCGTGGTGGCGGCGTGGGCA
GTTCCCAACACCGGAAACTTCGACGAGGTGGCGAACGCATGTTTCACTTC
GTCTATCTCCACCGTTGTCATCCTCGGGATGAACGGGCTCGGGTTTCTCA
TGATCTTCTACCTTTGGTTCGTGTGCGCCCGCCAGCTCAAGTGGGTCCGG
AAGCAGTTTAACGAGTACGACTCGATGAAGCGCACTCTGCTGTACATGAC
CATCACCCTGGCGAGCTACGGCGTGGTCGTCTTGTTTCTGCTGGCAGATG
ACCTTACAGTGTCGCGGCGAGTGGCCTTCTTCTGTTCGTGTGCGCCCGCC
AGCTCAAGTGGGTCCGGAAGCAGTTTAACGAGTACGACTCGATGAAGCGC
ACTCTGCTGTACATGACCATCACCCTGGCGAGCTACGGCGTGGTCGTCTT
GTTTCTGCTGGCAGATGACCTTACAGTGTCGCGGCGAGTGGCCTTCTTCT
ATCCGGTGATGACGACATACATCCTGCTGTGGGGCTCCATTTGCGAGCCG
TTCATGATGAAGATTCTGGGAGACGACGAGTACCTCGGGTCCTACACGCA
CGGATTTGCCCAGCTTCCTTCGCCGGCCCAGATCCGGTGATGACGACATA
CATCCTGCTGTGGGGCTCCATTTGCGAGCCGTTCATGATGAAGATTCTGG
GAGACGACGAGTACCTCGGGTCCTACACGCACGGATTTGCCCAGCTTCCT
TCGCCGGCCCAGCTGAAGGCCAGCCTGGCAGAACAGCTTTCCGTGGAACA
GCTGCGGGACGAGTTCCGGCGGTACATCAAGACCAAGGTGGCCCAGGAAC
TGATAGACTTCTACCTGGACTCGCTAGACCGGGAAGAGGTGACAGATTTT
TTCGAGAGACAGCTGAAGGCCAGCCTGGCAGAACAGCTTTCCGTGGAACA
GCTGCGGGACGAGTTCCGGCGGTACATCAAGACCAAGGTGGCCCAGGAAC
TGATAGACTTCTACCTGGACTCGCTAGACCGGGAAGAGGTGACAGATTTT
TTCGAGAGACAGGCGGTCACCATGCGCATCGTGGACCAGTACATCAGGGA
GGGATCCAGTGACCAAGCGGTCACCATGCGCATCGTGGACCAGTACATCA
GGGAGGGATCCAGTGACCAAGTTAACGTATCCGGAGCATGCCGGGAGACG
ATTCTCGCGACGGACGTGACTGCATTCGATATCTTCGAAGAGGCGAGGGC
GGAGGTCTTGGTGGTCATGGAGGTTAACGTATCCGGAGCATGCCGGGAGA
CGATTCTCGCGACGGACGTGACTGCATTCGATATCTTCGAAGAGGCGAGG
GCGGAGGTCTTGGTGGTCATGGAGACCAACTTCCAGAGCGACTTTGTGAC
GACGGAAGGATTCCGCCGCATCATGGACGCTTCCGAGAAGGAGCAGCGGG
AGCTGAGCCTCCTCCGTTCGGGGGGCATGCTATCTCTGGGGAGGCTGTCG
ACGCCCGGATCACGTGTATCGGAGAGGACTTCCCGTTCGTCCTCTCCGCA
CAACTCCGCCGCCGCCGCCGCCGCCGCCGCCGCAACTGCTGTCCGAGACG
AGCTTCCGCCGCTTCGACCAACTTCCAGAGCGACTTTGTGACGACGGAAG
GATTCCGCCGCATCATGGACGCTTCCGAGAAGGAGCAGCGGGAGCTGAGC
CTCCTCCGTTCGGGGGGCATGCTATCTCTGGGGAGGCTGTCGACGCCCGG
ATCACGTGTATCGGAGAGGACTTCCCGTTCGTCCTCTCCGCACAACTCCG
CCGCCGCCGCCGCCGCCGCCGCCGCAACTGCTGTCCGAGACGAGCTTCCG
CCGCTTCGCTCAGATGACTGCCCCAGCACCAACAACCTACGCCGGTTTTA
CGTCGAATCTTGGTCCAGCCCCGTCGACGCCGCGCACGAAAGCAGAGGAT
GGGGCGGCAGCGAAGGCGGCGGCTGACTCAGATGACTGCCCCAGCACCAA
CAACCTACGCCGGTTTTACGTCGAATCTTGGTCCAGCCCCGTCGACGCCG
CGCACGAAAGCAGAGGATGGGGCGGCAGCGAAGGCGGCGGCTGA
back to top