mRNA_Ecto-sp9_F_contig10617.564.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10617.564.1
Unique NamemRNA_Ecto-sp9_F_contig10617.564.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: Similarities (to vacuolar protein sorting-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME1_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.080e-53
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 LCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM
Sbjct:  191 LCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 282
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: PH (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 3.490e-53
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 LCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM
Sbjct: 2233 LCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 2324
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: PH (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA73_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.570e-35
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 LCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LCLNALQLEH FGGR     ++L+HYK A L Q+  VVGSF FLGDPV L+SN+STGVKD FYEP+EGLKPDG GFL GLG+GG SLVSNT+
Sbjct: 2163 LCLNALQLEHTFGGRGQVLGLVLRHYKMALLRQLGGVVGSFAFLGDPVRLMSNISTGVKDLFYEPLEGLKPDGGGFLQGLGRGGQSLVSNTL 2254
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4Z9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.290e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    7 LNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LNAL +EHAFG  +     + K+Y      Q+HK++GSFDFLG+PVG L ++ TGV+DF YEP+EGLK  GKGF  GL KG  SL++NT+
Sbjct: 3858 LNALMIEHAFGTSSDLTRRVSKYYTRQLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKVGGKGFSKGLAKGTASLMTNTV 3947
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JGP2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.070e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    7 LNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LNAL +EHAFG  +     + K+Y      Q+HK++GSFDFLG+PVG L ++ TGV+DF YEP+EGLK  GKGF  GL KG  SL++NT+
Sbjct:  754 LNALMIEHAFGTSSDLTRRVSKYYTRQLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTV 843
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: Mannosyltransferase (n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RL93_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.090e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    7 LNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LNAL +EHAFG  +     + K+Y      Q+HK++GSFDFLG+PVG L ++ TGV+DF YEP+EGLK  GKGF  GL KG  SL++NT+
Sbjct:  847 LNALMIEHAFGTSSDLTRRVSKYYTRQLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTV 936
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: Mannosyltransferase (n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCA5_PHYRM)

HSP 1 Score: 101 bits (252), Expect = 4.220e-23
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    7 LNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LNAL +EHAFG        + K+Y      Q+HK++GSFDFLG+PVG L ++ TGV+DF YEP+EGLK  GKGF  GL KG  SL++NT+
Sbjct:  869 LNALMIEHAFGTSGDLTRRVSKYYTRQLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTV 958
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U5U2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.260e-23
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    7 LNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LNAL +EHAFG        + K+Y      Q+HK++GSFDFLG+PVG L ++ TGV+DF YEP+EGLK  GKGF  GL KG  SL++NT+
Sbjct: 3337 LNALMIEHAFGTSGDLTRRVSKYYTRQLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTV 3426
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: PH (domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YB47_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.050e-22
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    7 LNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            L+AL +EHAFG  +     + K+Y      Q+HK++GSFDFLG+PVG L ++ TGV+DF YEP+EGLK  GKGF  GL KG  SL++NT+
Sbjct:  137 LSALMIEHAFGTSSDLTRRVSKYYTRQLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKVGGKGFSKGLAKGTASLMTNTV 226
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Match: Uncharacterized (protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIA4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.010e-22
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    7 LNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM 276
            LNAL +EHAFG        + K+Y      Q+HK++GSFDFLG+PVGLL ++ TGV+DF YEP+EGLK  GKGF  GL     SL+SNT+
Sbjct: 3989 LNALMIEHAFGTSDDLTRRVSKYYTRQLWKQLHKILGSFDFLGNPVGLLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLXXXTASLMSNTV 4078
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10617.564.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Similarities1.080e-53100.00to vacuolar protein sorting-associated protein n=1... [more]
PH3.490e-53100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PH5.570e-3571.74domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized2.290e-2354.44protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized3.070e-2354.44protein n=2 Tax=Phytophthora kernoviae TaxID=32545... [more]
Mannosyltransferase3.090e-2354.44n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=... [more]
Mannosyltransferase4.220e-2354.44n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3... [more]
Uncharacterized4.260e-2354.44protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6... [more]
PH1.050e-2253.33domain-containing protein n=1 Tax=Nothophytophthor... [more]
Uncharacterized7.010e-2254.44protein n=1 Tax=Peronospora effusa TaxID=542832 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10617contigEcto-sp9_F_contig10617:2884..3581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue2e-45
Seed eggNOG ortholog2880.D8LME1
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928280.9176743-CDS-Ecto-sp9_F_contig10617:2883..29821622928280.9176743-CDS-Ecto-sp9_F_contig10617:2883..2982Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10617 2884..2982 +
1692277819.3113642-CDS-Ecto-sp9_F_contig10617:2883..29821692277819.3113642-CDS-Ecto-sp9_F_contig10617:2883..2982Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10617 2884..2982 +
1622928280.9431794-CDS-Ecto-sp9_F_contig10617:3404..35811622928280.9431794-CDS-Ecto-sp9_F_contig10617:3404..3581Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10617 3405..3581 +
1692277819.3215413-CDS-Ecto-sp9_F_contig10617:3404..35811692277819.3215413-CDS-Ecto-sp9_F_contig10617:3404..3581Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10617 3405..3581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10617.564.1prot_Ecto-sp9_F_contig10617.564.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10617 2884..3581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10617.564.1

>prot_Ecto-sp9_F_contig10617.564.1 ID=prot_Ecto-sp9_F_contig10617.564.1|Name=mRNA_Ecto-sp9_F_contig10617.564.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
LCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQVHKVVGSFDFLGDPVGL
LSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTM
back to top

mRNA from alignment at Ecto-sp9_F_contig10617:2884..3581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10617.564.1 ID=mRNA_Ecto-sp9_F_contig10617.564.1|Name=mRNA_Ecto-sp9_F_contig10617.564.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=698bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10617:2884..3581+ (Ectocarpus species9 EcSCA_722f female)
CTGTGCCTGAACGCGTTACAGCTCGAGCACGCTTTCGGCGGCCGGGCGGT
GTTTGCCGAGGTCATGCTGAAGCACTACAAGTTCGCGTTTCTCTCGCAGG
TGAGTTGTTGCTGTCGGTGTTGTGGTCGTGTTGTTTTTGTTATCGTCTGT
TGTTTGTGGTTTCTCTTCTACATGTACGTATGGCGAGAGCATGCCGCATT
TGCATGAGGTGTGTGCCCGTTACCCTAAAGCCAAGGTATGTATTACGCCC
TCGTATTTGTTGTGTACCACCTTTGGCCCTCACCCATGTGTAAAAGTCTG
CCTCGGACTTGGTTTCTCGGGATGAAGCTCACCCTTCACGCTGAACACAC
ACATCTCATGGCGTGCATTGCCCGGGTAGTGTCGGCGAAAACCCGGCTCA
ACCCGTCCTGGTGGCGTTGGTAGAAGTGCGATTGCGTATCGGCGCAGGGC
TATGGCCAACACTGAATGTAGTCATATTTTGTCTGCCCCCCACAACCACC
GTTTTGAAATCGCCTCGGCAGGTGCACAAGGTGGTCGGGAGCTTCGACTT
CCTGGGAGACCCTGTCGGGCTGCTCTCTAACCTGTCCACAGGCGTCAAGG
ACTTCTTCTACGAGCCTATCGAGGGCCTCAAGCCGGACGGCAAGGGCTTC
TTGTACGGCCTGGGGAAGGGGGGCACCTCCCTGGTCTCGAACACCATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10617:2884..3581+

>mRNA_Ecto-sp9_F_contig10617.564.1 ID=mRNA_Ecto-sp9_F_contig10617.564.1|Name=mRNA_Ecto-sp9_F_contig10617.564.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10617:2884..3581+ (Ectocarpus species9 EcSCA_722f female)
CTGTGCCTGAACGCGTTACAGCTCGAGCACGCTTTCGGCGGCCGGGCGGT
GTTTGCCGAGGTCATGCTGAAGCACTACAAGTTCGCGTTTCTCTCGCAGC
TGTGCCTGAACGCGTTACAGCTCGAGCACGCTTTCGGCGGCCGGGCGGTG
TTTGCCGAGGTCATGCTGAAGCACTACAAGTTCGCGTTTCTCTCGCAGGT
GCACAAGGTGGTCGGGAGCTTCGACTTCCTGGGAGACCCTGTCGGGCTGC
TCTCTAACCTGTCCACAGGCGTCAAGGACTTCTTCTACGAGCCTATCGAG
GGCCTCAAGCCGGACGGCAAGGGCTTCTTGTACGGCCTGGGGAAGGGGGG
CACCTCCCTGGTCTCGAACACCATGGTGCACAAGGTGGTCGGGAGCTTCG
ACTTCCTGGGAGACCCTGTCGGGCTGCTCTCTAACCTGTCCACAGGCGTC
AAGGACTTCTTCTACGAGCCTATCGAGGGCCTCAAGCCGGACGGCAAGGG
CTTCTTGTACGGCCTGGGGAAGGGGGGCACCTCCCTGGTCTCGAACACCA
TG
back to top