mRNA_Ecto-sp9_F_contig10615.562.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM90_ECTSI) HSP 1 Score: 145 bits (366), Expect = 8.380e-41 Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query: 19 RHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
R DYH+GREDESKAL VGNALVKGYKAFLDVKQKGWRE+VEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ
Sbjct: 22 RGLADYHAGREDESKALFVGNALVKGYKAFLDVKQKGWREYVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 96
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7B1_FISSO) HSP 1 Score: 110 bits (276), Expect = 2.980e-28 Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
QDGF R +DYH G++D A+ +G ALV+GYKAFLDV Q GWR+++EEPG PL+N V PSGC EHAN Y IY +DSRQ
Sbjct: 39 QDGFPERSKMDYHHGQDDAVPAVFLGKALVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPSGCYEHANEYWIYLIDSRQ 119
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1X2_PHATC) HSP 1 Score: 110 bits (276), Expect = 1.290e-27 Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
QDGF LDYHSG++DE +A+ VG ALV+G KA+LDV Q GWR++ EPG PL+N VVV SGC EHAN Y IYAVDSRQ
Sbjct: 36 QDGFPDHVKLDYHSGQDDEVRAVFVGRALVRGTKAYLDVMQDGWRQYTSEPGQPLINSVVVVSGCHEHANQYWIYAVDSRQ 116
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G4_FISSO) HSP 1 Score: 108 bits (269), Expect = 1.030e-26 Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
QDGF R +DYH G++D AL +G LV+GYKAFLDV Q GWR+++EEPG PL+N V P+GC EHAN Y IY +D+RQ
Sbjct: 39 QDGFPERSKMDYHHGQDDAVPALFLGKGLVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPTGCYEHANEYWIYLIDARQ 119
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPM2_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 5.230e-20 Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESK--ALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQA 246
++GF R LDY +D S A +G ALV+GYK+FLD+K WRE+ E VNP +VP+GC EHAN YAIYAVDSRQA
Sbjct: 56 EEGFELRRNLDYRPSDDDASSVNATFLGKALVRGYKSFLDIKNPTWREYKGEKELKTVNPAIVPTGCEEHANRYAIYAVDSRQA 139
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1J3_PHATC) HSP 1 Score: 81.6 bits (200), Expect = 8.570e-17 Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 QDGFAARHWLDY-HSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAV 231
QDGF RH L+Y H + + A VG ALV GYKA+LDVK KG+RE+ E P + N VV+P+GCA HANIY ++ V
Sbjct: 38 QDGFELRHRLNYRHPQTQMDYPAQFVGTALVPGYKAYLDVKDKGFREYREANPPTVPNAVVMPTGCAAHANIYHVFFV 115
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC9_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.230e-14 Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 64 ALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLV-NPVVVPSGCAEHANIYAIYAVDSRQ 243
A LVG ALV+GYKA+LD+K G+RE+ EP PP V NPV++P+GC ANIY +Y V S+Q
Sbjct: 14 ARLVGTALVRGYKAYLDIKPPGYREYKAEPYPPKVPNPVIIPTGCYHDANIYWLYLVKSQQ 74
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1H8DWD8_9PROT) HSP 1 Score: 73.2 bits (178), Expect = 1.230e-13 Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
++GF R LD+ E KA+ +G AL++G+KA LD+K GWRE+ EP VNP ++ +G ANIY+IY VD RQ
Sbjct: 73 EEGFPLRKNLDFIEDSETV-KAVFLGKALIRGFKAHLDIKSAGWREYRAEPAINPVNPAMIATGDRNDANIYSIYGVDRRQ 152
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UY55_DIALT) HSP 1 Score: 64.7 bits (156), Expect = 2.810e-11 Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSR 240
QDGF R LD+ ++ A+LVG A+V+G KA++DVK+ G REH+ P NP V +G AN+Y +Y VD R
Sbjct: 26 QDGFELRANLDHA-----QTPAVLVGAAVVRGVKAYVDVKEHGCREHIPPPAAARCNPACVVTGERADANLYHLYLVDER 100
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDB5_DIALT) HSP 1 Score: 64.7 bits (156), Expect = 2.680e-10 Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSR 240
QDGF R LD+ ++ A+LVG A+V+G KA++DVK+ G REH+ P NP V +G AN+Y +Y VD R
Sbjct: 18 QDGFELRANLDHA-----QTPAVLVGAAVVRGVKAYVDVKEHGCREHIPPPAAARCNPACVVTGERADANLYHLYLVDER 92 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10615.562.1 >prot_Ecto-sp9_F_contig10615.562.1 ID=prot_Ecto-sp9_F_contig10615.562.1|Name=mRNA_Ecto-sp9_F_contig10615.562.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=82bp QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEback to top mRNA from alignment at Ecto-sp9_F_contig10615:3732..4401- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10615.562.1 ID=mRNA_Ecto-sp9_F_contig10615.562.1|Name=mRNA_Ecto-sp9_F_contig10615.562.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=670bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10615:3732..4401- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10615:3732..4401- >mRNA_Ecto-sp9_F_contig10615.562.1 ID=mRNA_Ecto-sp9_F_contig10615.562.1|Name=mRNA_Ecto-sp9_F_contig10615.562.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10615:3732..4401- (Ectocarpus species9 EcSCA_722f female)back to top |