mRNA_Ecto-sp9_F_contig10615.562.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10615.562.1
Unique NamemRNA_Ecto-sp9_F_contig10615.562.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM90_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 8.380e-41
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query:   19 RHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
            R   DYH+GREDESKAL VGNALVKGYKAFLDVKQKGWRE+VEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ
Sbjct:   22 RGLADYHAGREDESKALFVGNALVKGYKAFLDVKQKGWREYVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 96          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7B1_FISSO)

HSP 1 Score: 110 bits (276), Expect = 2.980e-28
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
            QDGF  R  +DYH G++D   A+ +G ALV+GYKAFLDV Q GWR+++EEPG PL+N  V PSGC EHAN Y IY +DSRQ
Sbjct:   39 QDGFPERSKMDYHHGQDDAVPAVFLGKALVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPSGCYEHANEYWIYLIDSRQ 119          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1X2_PHATC)

HSP 1 Score: 110 bits (276), Expect = 1.290e-27
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
            QDGF     LDYHSG++DE +A+ VG ALV+G KA+LDV Q GWR++  EPG PL+N VVV SGC EHAN Y IYAVDSRQ
Sbjct:   36 QDGFPDHVKLDYHSGQDDEVRAVFVGRALVRGTKAYLDVMQDGWRQYTSEPGQPLINSVVVVSGCHEHANQYWIYAVDSRQ 116          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G4_FISSO)

HSP 1 Score: 108 bits (269), Expect = 1.030e-26
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
            QDGF  R  +DYH G++D   AL +G  LV+GYKAFLDV Q GWR+++EEPG PL+N  V P+GC EHAN Y IY +D+RQ
Sbjct:   39 QDGFPERSKMDYHHGQDDAVPALFLGKGLVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPTGCYEHANEYWIYLIDARQ 119          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPM2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.230e-20
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESK--ALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQA 246
            ++GF  R  LDY    +D S   A  +G ALV+GYK+FLD+K   WRE+  E     VNP +VP+GC EHAN YAIYAVDSRQA
Sbjct:   56 EEGFELRRNLDYRPSDDDASSVNATFLGKALVRGYKSFLDIKNPTWREYKGEKELKTVNPAIVPTGCEEHANRYAIYAVDSRQA 139          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1J3_PHATC)

HSP 1 Score: 81.6 bits (200), Expect = 8.570e-17
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 QDGFAARHWLDY-HSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAV 231
            QDGF  RH L+Y H   + +  A  VG ALV GYKA+LDVK KG+RE+ E   P + N VV+P+GCA HANIY ++ V
Sbjct:   38 QDGFELRHRLNYRHPQTQMDYPAQFVGTALVPGYKAYLDVKDKGFREYREANPPTVPNAVVMPTGCAAHANIYHVFFV 115          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.230e-14
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   64 ALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLV-NPVVVPSGCAEHANIYAIYAVDSRQ 243
            A LVG ALV+GYKA+LD+K  G+RE+  EP PP V NPV++P+GC   ANIY +Y V S+Q
Sbjct:   14 ARLVGTALVRGYKAYLDIKPPGYREYKAEPYPPKVPNPVIIPTGCYHDANIYWLYLVKSQQ 74          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1H8DWD8_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-13
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQ 243
            ++GF  R  LD+    E   KA+ +G AL++G+KA LD+K  GWRE+  EP    VNP ++ +G    ANIY+IY VD RQ
Sbjct:   73 EEGFPLRKNLDFIEDSETV-KAVFLGKALIRGFKAHLDIKSAGWREYRAEPAINPVNPAMIATGDRNDANIYSIYGVDRRQ 152          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UY55_DIALT)

HSP 1 Score: 64.7 bits (156), Expect = 2.810e-11
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSR 240
            QDGF  R  LD+      ++ A+LVG A+V+G KA++DVK+ G REH+  P     NP  V +G    AN+Y +Y VD R
Sbjct:   26 QDGFELRANLDHA-----QTPAVLVGAAVVRGVKAYVDVKEHGCREHIPPPAAARCNPACVVTGERADANLYHLYLVDER 100          
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Match: Uncharacterized (protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDB5_DIALT)

HSP 1 Score: 64.7 bits (156), Expect = 2.680e-10
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSR 240
            QDGF  R  LD+      ++ A+LVG A+V+G KA++DVK+ G REH+  P     NP  V +G    AN+Y +Y VD R
Sbjct:   18 QDGFELRANLDHA-----QTPAVLVGAAVVRGVKAYVDVKEHGCREHIPPPAAARCNPACVVTGERADANLYHLYLVDER 92          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10615.562.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Uncharacterized8.380e-4192.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.980e-2861.73protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Predicted1.290e-2765.43protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]
Uncharacterized1.030e-2659.26protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Uncharacterized5.230e-2054.76protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A... [more]
Predicted8.570e-1753.85protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Hypothetical2.230e-1459.02protein (Fragment) n=1 Tax=Amphora coffeiformis Ta... [more]
Uncharacterized1.230e-1345.68protein n=2 Tax=Nitrosomonas marina TaxID=917 RepI... [more]
Hypothetical2.810e-1143.75protein (Fragment) n=1 Tax=Diacronema lutheri TaxI... [more]
Uncharacterized2.680e-1043.75protein n=2 Tax=Diacronema lutheri TaxID=2081491 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10615contigEcto-sp9_F_contig10615:3732..4401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue4.6e-33
Seed eggNOG ortholog2880.D8LM90
EggNOG OGs2EIPY@1,2SP2G@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928280.688769-CDS-Ecto-sp9_F_contig10615:3732..38521622928280.688769-CDS-Ecto-sp9_F_contig10615:3732..3852Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 3733..3852 -
1692277819.2402332-CDS-Ecto-sp9_F_contig10615:3732..38521692277819.2402332-CDS-Ecto-sp9_F_contig10615:3732..3852Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 3733..3852 -
1622928280.7059765-CDS-Ecto-sp9_F_contig10615:4275..44011622928280.7059765-CDS-Ecto-sp9_F_contig10615:4275..4401Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 4276..4401 -
1692277819.2520356-CDS-Ecto-sp9_F_contig10615:4275..44011692277819.2520356-CDS-Ecto-sp9_F_contig10615:4275..4401Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 4276..4401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10615.562.1prot_Ecto-sp9_F_contig10615.562.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10615 3733..4401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10615.562.1

>prot_Ecto-sp9_F_contig10615.562.1 ID=prot_Ecto-sp9_F_contig10615.562.1|Name=mRNA_Ecto-sp9_F_contig10615.562.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=82bp
QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEE
PGPPLVNPVVVPSGCAEHANIYAIYAVDSRQA
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mRNA from alignment at Ecto-sp9_F_contig10615:3732..4401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10615.562.1 ID=mRNA_Ecto-sp9_F_contig10615.562.1|Name=mRNA_Ecto-sp9_F_contig10615.562.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=670bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10615:3732..4401- (Ectocarpus species9 EcSCA_722f female)
CAGGATGGATTCGCTGCCCGTCACTGGCTAGACTACCACTCCGGCCGGGA AGACGAGAGCAAAGCGCTCCTTGTGGGAAACGCGCTCGTGAAGGGATACA AGGCGTTCCTTGACGTAAAGCAGAAGGTCTGTCTGACGCCAGCGCAATTG ATTGTGACTGGCAACTACCTGACGACCCCCCCCTCTACACGTAGTACCCT CTTTTGAATCGATGTGAGTAGCAGAGCCGGCGGGATTGTCGAGAACGCAT GAAAAGGAGGGGAGGCAAGTTGGGTGCCTGCCATCTGTGTTGCAACTTAG ATGCAGATTCGTAAGATGGGATGGCGGCAAGACACAGAGACGCACAAAGA GAATCAGAGAGGTGCAAAGAGAGAGGCACACAGAGAGAGGTGTAGAGACA GAGACAGAGTCAGTTAGACAGGCAGGCAGACAGACACACAGACAGACACA CAGACAAAGACAGAAAAGGGTGTACTCACCCTACGTATTGCTACTGTCTC GCTACAACCCCTCCAACACCCCCTGCATCCATCAAAAACCTATTGACAGG GCTGGCGAGAGCACGTGGAAGAACCTGGACCTCCCCTGGTCAATCCCGTC GTTGTTCCAAGCGGGTGCGCCGAGCACGCCAACATCTACGCAATCTACGC CGTCGACTCGAGGCAGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10615:3732..4401-

>mRNA_Ecto-sp9_F_contig10615.562.1 ID=mRNA_Ecto-sp9_F_contig10615.562.1|Name=mRNA_Ecto-sp9_F_contig10615.562.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10615:3732..4401- (Ectocarpus species9 EcSCA_722f female)
CAGGATGGATTCGCTGCCCGTCACTGGCTAGACTACCACTCCGGCCGGGA
AGACGAGAGCAAAGCGCTCCTTGTGGGAAACGCGCTCGTGAAGGGATACA
AGGCGTTCCTTGACGTAAAGCAGAAGCAGGATGGATTCGCTGCCCGTCAC
TGGCTAGACTACCACTCCGGCCGGGAAGACGAGAGCAAAGCGCTCCTTGT
GGGAAACGCGCTCGTGAAGGGATACAAGGCGTTCCTTGACGTAAAGCAGA
AGGGCTGGCGAGAGCACGTGGAAGAACCTGGACCTCCCCTGGTCAATCCC
GTCGTTGTTCCAAGCGGGTGCGCCGAGCACGCCAACATCTACGCAATCTA
CGCCGTCGACTCGAGGCAGGCGGGCTGGCGAGAGCACGTGGAAGAACCTG
GACCTCCCCTGGTCAATCCCGTCGTTGTTCCAAGCGGGTGCGCCGAGCAC
GCCAACATCTACGCAATCTACGCCGTCGACTCGAGGCAGGCG
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