mRNA_Ecto-sp9_F_contig10615.561.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10615.561.1
Unique NamemRNA_Ecto-sp9_F_contig10615.561.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM90_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 6.940e-177
Identity = 270/323 (83.59%), Postives = 274/323 (84.83%), Query Frame = 1
Query:   19 RHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLA-----------------------------------------RHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAERQQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 864
            R   DYH+GREDESKAL VGNALVKGYKAFLDVKQKGWRE+VEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTL                                          RHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDD AERQQYWASFRQAIRQAEHRLGQQQEQRDA VQAT+QEEEAQRADDGFG VTTAARP+SECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL
Sbjct:   22 RGLADYHAGREDESKALFVGNALVKGYKAFLDVKQKGWREYVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLVSVVVVEVVVVVRRFSWTTHEPKSRHSDACCCRFQSCFVPPPRHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDDAERQQYWASFRQAIRQAEHRLGQQQEQRDAFVQATEQEEEAQRADDGFGDVTTAARPVSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 344          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN6_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 5.020e-110
Identity = 177/194 (91.24%), Postives = 182/194 (93.81%), Query Frame = 1
Query:  283 MTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAERQQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 864
            MTPDTGLVDLTAEETGRF RTLARHQASVEGKSDLESAAFLLVTGVWAPG LIESPVLYTK DGT+VTDYPRSLALWAGTTDGARL DD AERQQY  S RQAIRQAEHRLGQQQE++DA+VQAT  EEEAQRAD+G G VTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL
Sbjct:    1 MTPDTGLVDLTAEETGRFARTLARHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTKGDGTQVTDYPRSLALWAGTTDGARLADDNAERQQYSESLRQAIRQAEHRLGQQQERKDALVQAT--EEEAQRADNGSGDVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 192          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7B1_FISSO)

HSP 1 Score: 205 bits (522), Expect = 1.520e-58
Identity = 108/210 (51.43%), Postives = 135/210 (64.29%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVW-APGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGAR--LDDDAAER----------QQYWASFRQA 591
            QDGF  R  +DYH G++D   A+ +G ALV+GYKAFLDV Q GWR+++EEPG PL+N  V PSGC EHAN Y IY +DSRQV+  L  EPRFLS+TPDTG+VDL AEET   VR L       +GKSDLE  A  LVT VW      + SP +   EDGT +T++P SLALWA  +D  R  L ++ A++          Q+YW   R+A
Sbjct:   39 QDGFPERSKMDYHHGQDDAVPAVFLGKALVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPSGCYEHANEYWIYLIDSRQVMAVLNNEPRFLSITPDTGMVDLRAEETSPVVRALLEQMIQQQGKSDLEQVAIPLVTAVWFQKESHVPSPPIRIHEDGTYITNFPESLALWANVSDADRTALQEECADQTCSAEALQRVQRYWDGIRRA 248          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G4_FISSO)

HSP 1 Score: 206 bits (525), Expect = 3.160e-58
Identity = 117/290 (40.34%), Postives = 163/290 (56.21%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVW-APGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGAR---LDDDAAER----------QQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQV 828
            QDGF  R  +DYH G++D   AL +G  LV+GYKAFLDV Q GWR+++EEPG PL+N  V P+GC EHAN Y IY +D+RQV+  L  EPRFLS+TPDTG+VDL A ET   VR L  +    +GKSD E  A  LVT VW      + SP +   +DGT++T++P SLALWA  +D  R   + +D +++          Q+YW   R+A+R AE  L                  E +  D G         P   C+ + R+G G D  R+   +++ ++ +++  V
Sbjct:   39 QDGFPERSKMDYHHGQDDAVPALFLGKGLVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPTGCYEHANEYWIYLIDARQVMAVLNNEPRFLSITPDTGMVDLQAGETTPVVRALFTNIIQQQGKSDFERVAIPLVTAVWFQKESHVPSPPIRIHDDGTQITNFPESLALWANVSDADRTALVQEDCSDQTCSAEALQRVQRYWDGIRRAVRHAEQSLA-----------------ELKEVDYG---------PPFSCQKKVRFGVGNDTARINDPFSSEQMTELLQSV 302          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1X2_PHATC)

HSP 1 Score: 196 bits (499), Expect = 3.070e-54
Identity = 121/295 (41.02%), Postives = 153/295 (51.86%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARL---------------------DDDAAER-----QQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGEL 807
            QDGF     LDYHSG++DE +A+ VG ALV+G KA+LDV Q GWR++  EPG PL+N VVV SGC EHAN Y IYAVDSRQVL  L  EPRFLS+TPDTGLVDLT  ET + V+ LA+ Q   +GK +    +F +V   W     + SP +    DGT +T++P SLALWA   D  R+                     + +A+ R     ++YW   R A+R AE                         AD     V  A  P   C   AR G   D  R+   ++A EL
Sbjct:   36 QDGFPDHVKLDYHSGQDDEVRAVFVGRALVRGTKAYLDVMQDGWRQYTSEPGQPLINSVVVVSGCHEHANQYWIYAVDSRQVLAVLNNEPRFLSITPDTGLVDLTVAETDKAVKVLAQSQIQKQGKRNTTHVSFPIVVATWYHESFLPSPPMRHLPDGTAITNFPASLALWAKVNDADRVTGCDYTPTDSSSSIGSNNTVEECEASSRTLAAQRRYWDGIRSAVRAAE-------------------------ADRPSRDVWRANGPPFACERLARLGVDADTARINYSFSAEEL 305          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1J3_PHATC)

HSP 1 Score: 174 bits (441), Expect = 2.130e-46
Identity = 100/203 (49.26%), Postives = 125/203 (61.58%), Query Frame = 1
Query:    1 QDGFAARHWLDY-HSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAERQQYWASFRQAIRQAE 606
            QDGF  RH L+Y H   + +  A  VG ALV GYKA+LDVK KG+RE+ E   P + N VV+P+GCA HANIY ++ V +  +LN L  EPRFLS+TPDTGLVDL A+ET   VR +AR     + K D    A  LVTGVW     +ESP +Y + DGTKVT +   LA+WAG      +D DA      WA+    IRQ+E
Sbjct:   38 QDGFELRHRLNYRHPQTQMDYPAQFVGTALVPGYKAYLDVKDKGFREYREANPPTVPNAVVMPTGCAAHANIYHVFFVPTPVLLNVLAGEPRFLSITPDTGLVDLQADETSDTVRRVARSVIKAQHKRDDSRVAIPLVTGVWFHDTFVESPPVYVR-DGTKVTSFDGGLAVWAGVEREDLVDADATA----WANVHTKIRQSE 235          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1H8DWD8_9PROT)

HSP 1 Score: 170 bits (431), Expect = 5.310e-45
Identity = 94/204 (46.08%), Postives = 129/204 (63.24%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLES---AAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAERQQYWASFRQAIRQA 603
            ++GF  R  LD+    E   KA+ +G AL++G+KA LD+K  GWRE+  EP    VNP ++ +G    ANIY+IY VD RQ++ ALL EPRFLSMTPDT LVD  AEET   V++L  +Q   +GK+ + +   AAFL V  VW     + SP+LY K+DGT+VTD+P SLA +AG +D  R +D  A    Y  +   A+++A
Sbjct:   73 EEGFPLRKNLDFIEDSETV-KAVFLGKALIRGFKAHLDIKSAGWREYRAEPAINPVNPAMIATGDRNDANIYSIYGVDRRQLVTALLNEPRFLSMTPDTALVDRNAEETYETVKSLITNQILNDGKASVTNKNEAAFLTVVSVWHSRHFVPSPILYIKKDGTRVTDFPNSLAAFAGISDQLRTEDPEA----YHVAVEAAVKKA 271          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC9_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.010e-43
Identity = 100/195 (51.28%), Postives = 119/195 (61.03%), Query Frame = 1
Query:   64 ALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLV-NPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGG-LIESPVLYTKEDGTKVTDYPRSLALWAGT-TDGARL---DDDA--------AERQQYWASFRQAIRQAE 606
            A LVG ALV+GYKA+LD+K  G+RE+  EP PP V NPV++P+GC   ANIY +Y V S+QVL+ L  EPRFLS+TPDTGLVDL A ET   VR LA  Q    G ++ +  A  LVTGVW      +ESP  Y  EDGT+VT Y  SLALW G  TD   +   DDD         A R Q W +    IR AE
Sbjct:   14 ARLVGTALVRGYKAYLDIKPPGYREYKAEPYPPKVPNPVIIPTGCYHDANIYWLYLVKSQQVLHILAGEPRFLSITPDTGLVDLKAAETSDAVRQLALGQIQKHGFTNTDVFALPLVTGVWFDAASFVESPPAYLHEDGTRVTSYADSLALWTGVQTDDLLVVAEDDDGDGEGDTNMARRSQAWDAVYDKIRTAE 208          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DXW5_POLGL)

HSP 1 Score: 141 bits (356), Expect = 1.710e-34
Identity = 83/183 (45.36%), Postives = 109/183 (59.56%), Query Frame = 1
Query:    1 QDGFAARHWLDYH---SGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEP-GPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGAR 537
            QDGF  R  LDY    SG   E  A  +G AL +G KA+ D+K    RE+V    G   VNP +V +GC EHAN+YA+Y    +  L ALL EPR+LSM+PD   +DL AEET   ++ L +   S +GK++ E  A L V  V+     +E+PVLYTK DGT+VT++   LA  AGT+D  R
Sbjct:   34 QDGFPLRKNLDYTDPCSGAVAE--ATFLGWALCRGVKAYFDIKDPSCREYVPAAEGAARVNPAMVATGCWEHANVYAVYLAHEKAALKALLHEPRYLSMSPDMAQMDLKAEETSDNLKRLFKAAISEKGKAETERVALLTVVSVFKGPSFVENPVLYTKADGTQVTNFHDGLAKLAGTSDAER 214          
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPM2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.260e-32
Identity = 79/181 (43.65%), Postives = 104/181 (57.46%), Query Frame = 1
Query:    1 QDGFAARHWLDYHSGREDESK--ALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRF--VRTLA-----RHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWA 516
            ++GF  R  LDY    +D S   A  +G ALV+GYK+FLD+K   WRE+  E     VNP +VP+GC EHAN YAIYAVDSRQ +NAL  EPRFLS+  D GL DLTA +   F  ++ L       ++ S    S L   AFL VT  W     + + V+    DG  +TD+  S+ +W+
Sbjct:   56 EEGFELRRNLDYRPSDDDASSVNATFLGKALVRGYKSFLDIKNPTWREYKGEKELKTVNPAIVPTGCEEHANRYAIYAVDSRQAINALAGEPRFLSIAADMGLADLTAADDLTFPDIKKLVGAFANSNRLSGVEHSKLNRVAFLTVTSTWLKSTFVPNGVIRQDSDGI-ITDFAESIGIWS 235          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Uncharacterized6.940e-17783.59protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.020e-11091.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.520e-5851.43protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Uncharacterized3.160e-5840.34protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Predicted3.070e-5441.02protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]
Predicted2.130e-4649.26protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Uncharacterized5.310e-4546.08protein n=2 Tax=Nitrosomonas marina TaxID=917 RepI... [more]
Hypothetical3.010e-4351.28protein (Fragment) n=1 Tax=Amphora coffeiformis Ta... [more]
Hypothetical1.710e-3445.36protein (Fragment) n=2 Tax=Polarella glacialis Tax... [more]
Uncharacterized1.260e-3243.65protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10615contigEcto-sp9_F_contig10615:987..4401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.4
Seed ortholog evalue3.5e-98
Seed eggNOG ortholog2880.D8LM90
EggNOG OGs2EIPY@1,2SP2G@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1771
Cds size606
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928280.4299555-UTR-Ecto-sp9_F_contig10615:986..18901622928280.4299555-UTR-Ecto-sp9_F_contig10615:986..1890Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10615 987..1890 -
1692277819.167702-UTR-Ecto-sp9_F_contig10615:986..18901692277819.167702-UTR-Ecto-sp9_F_contig10615:986..1890Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10615 987..1890 -
1622928280.6225674-UTR-Ecto-sp9_F_contig10615:3243..32611622928280.6225674-UTR-Ecto-sp9_F_contig10615:3243..3261Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10615 3244..3261 -
1692277819.2107952-UTR-Ecto-sp9_F_contig10615:3243..32611692277819.2107952-UTR-Ecto-sp9_F_contig10615:3243..3261Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10615 3244..3261 -
1622928280.6331372-UTR-Ecto-sp9_F_contig10615:3735..38521622928280.6331372-UTR-Ecto-sp9_F_contig10615:3735..3852Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10615 3736..3852 -
1692277819.2203922-UTR-Ecto-sp9_F_contig10615:3735..38521692277819.2203922-UTR-Ecto-sp9_F_contig10615:3735..3852Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10615 3736..3852 -
1622928280.6437502-UTR-Ecto-sp9_F_contig10615:4275..44011622928280.6437502-UTR-Ecto-sp9_F_contig10615:4275..4401Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10615 4276..4401 -
1692277819.229731-UTR-Ecto-sp9_F_contig10615:4275..44011692277819.229731-UTR-Ecto-sp9_F_contig10615:4275..4401Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10615 4276..4401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928280.5866742-CDS-Ecto-sp9_F_contig10615:1890..22771622928280.5866742-CDS-Ecto-sp9_F_contig10615:1890..2277Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 1891..2277 -
1692277819.1773567-CDS-Ecto-sp9_F_contig10615:1890..22771692277819.1773567-CDS-Ecto-sp9_F_contig10615:1890..2277Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 1891..2277 -
1622928280.597424-CDS-Ecto-sp9_F_contig10615:2715..28421622928280.597424-CDS-Ecto-sp9_F_contig10615:2715..2842Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 2716..2842 -
1692277819.1874819-CDS-Ecto-sp9_F_contig10615:2715..28421692277819.1874819-CDS-Ecto-sp9_F_contig10615:2715..2842Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 2716..2842 -
1622928280.6084476-CDS-Ecto-sp9_F_contig10615:3151..32431622928280.6084476-CDS-Ecto-sp9_F_contig10615:3151..3243Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 3152..3243 -
1692277819.1992486-CDS-Ecto-sp9_F_contig10615:3151..32431692277819.1992486-CDS-Ecto-sp9_F_contig10615:3151..3243Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10615 3152..3243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10615.561.1prot_Ecto-sp9_F_contig10615.561.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10615 1891..3243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10615.561.1

>prot_Ecto-sp9_F_contig10615.561.1 ID=prot_Ecto-sp9_F_contig10615.561.1|Name=mRNA_Ecto-sp9_F_contig10615.561.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=202bp
MEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLV
TGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAER
QQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTT
AARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQE
L*
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mRNA from alignment at Ecto-sp9_F_contig10615:987..4401-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10615.561.1 ID=mRNA_Ecto-sp9_F_contig10615.561.1|Name=mRNA_Ecto-sp9_F_contig10615.561.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3415bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10615:987..4401- (Ectocarpus species9 EcSCA_722f female)
CAGGATGGATTCGCTGCCCGTCACTGGCTAGACTACCACTCCGGCCGGGA AGACGAGAGCAAAGCGCTCCTTGTGGGAAACGCGCTCGTGAAGGGATACA AGGCGTTCCTTGACGTAAAGCAGAAGGTCTGTCTGACGCCAGCGCAATTG ATTGTGACTGGCAACTACCTGACGACCCCCCCCTCTACACGTAGTACCCT CTTTTGAATCGATGTGAGTAGCAGAGCCGGCGGGATTGTCGAGAACGCAT GAAAAGGAGGGGAGGCAAGTTGGGTGCCTGCCATCTGTGTTGCAACTTAG ATGCAGATTCGTAAGATGGGATGGCGGCAAGACACAGAGACGCACAAAGA GAATCAGAGAGGTGCAAAGAGAGAGGCACACAGAGAGAGGTGTAGAGACA GAGACAGAGTCAGTTAGACAGGCAGGCAGACAGACACACAGACAGACACA CAGACAAAGACAGAAAAGGGTGTACTCACCCTACGTATTGCTACTGTCTC GCTACAACCCCTCCAACACCCCCTGCATCCATCAAAAACCTATTGACAGG GCTGGCGAGAGCACGTGGAAGAACCTGGACCTCCCCTGGTCAATCCCGTC GTTGTTCCAAGCGGGTGCGCCGAGCACGCCAACATCTACGCAATCTACGC CGTCGACTCGAGGCAGGCGAGTAGCCGGCAGAACACGCAATGGTTTCATG CTTTTATCGTCCACGATGGTGAGTTTTTCACGGAGATGTAAGCTGCAGTT AGCTCGGCTTGGCCACTCCGACGTCTCATAATTGTTAGAACCTCTGTTTG TGTACTGTGCGTAAGCTTTCCTCCACCTGCTTGTCTTTGGCGTGCGATCG TTGCAGGCGGTAATGTTCCCTAAGGAACCACCCACCTCTCGCATGGTTTT CCTGAGACCACTGCCAAGCTCCAGAGTGCAAACTTTTCAGACAGCAGTAC CATGATAACCTGCCGTCCCCAAACAGTTCTTCTGCAGCGAGGGCCGTACC CGAAAAATTGCGGCTGATCCATATTTGACGGTACCTTTCCACGCTTTTTC TACAGGGTAGAGGCGGAGAGTGGCGAGCCTCAGCATCGTTCTTACTCCCT AGTGGGTGGTTTTCCCTGCTCTGCATTCTTTGCATTTTAGGTTCTTAACG CTTTGCTGATGGAGCCCCGGTTTCTGAGCATGACACCCGACACGGGTCTG GTGGACTTGACCGCCGAGGAAACGGGACGGTTCGTCCGGACTCTCGCAAG GTCGATTCAAGCACAATAACACTTGTACCCCCATGCAAATAAACTCACTC TATAATAAAATCATGTGATTAGGGGGGTGCGCAGAGATAGTTTCAAATAT CTTCTCATACGAAAAAGGGAACCAACGATCGCAGCTAGTAGCTACTTGGG GTGTCCACGACACAGGGGAGACACACCCGACGTGTCGGTGGTGGTGGTGG TGGTGGTGGTGGTGGTTCGACGTTTCTCGTGGACAACTCACGAACCAAAA TCAAGGCACTCCGATGCATGTAGCTGTCGTTGCCAATCGTGTTTCGTCCC GCCACCCAGACATCAAGCGAGCGTTGAAGGCAAGAGCGATCTCGAAAGCG CGGCGTTCTTGTTGGTGACAGGCGTGTGGGCTCCGGGGGGCTTGATTGAG AGTCCCGTGCTCTACACCAAAGAGGACGGAACCAAGGTAAATTGACGACT TTCCTGCCCGATACCTACCGATACGTGGTTGCCGAGCGTCTGACATCCCT CTAGACTACGGCATCGACGTCGTTTGTAACGTCAAACGTGTGGTTACTAT GTACTTGTACGAGACACAGCATCGACATTGCCGATGAGGGAAATACTTTG TGGAGACAAGACCTCCTGACAGAATAAGCGACCGCGTCGCACACTGTCTC CATGTCACCTGCAGGTTTCCGCTTTTTTTTTCTTTTCCGCATTTTGGCCC AACCTGCGACTTCTTGTCGTCTTGATCTATGTATATGAGAAACGGTGACG AACCGAACAGCTCCTCGTACCTGAAAAGAGGAAAAAATTGAACTTACATT CAGAAATCCCGCTGAAGCTCAACACCGTTGCCGCCGAAGCGCAACCTGCC CAACCATCCCCCATCGCGGAGCAGGTGACAGACTACCCGCGCTCGTTGGC GCTTTGGGCCGGCACAACGGACGGCGCCCGCCTCGACGACGACGCCGCCG AGCGCCAACAGTACTGGGCGTCCTTTCGGCAGGCCATCCGGCAAGCCGAA CACCGCCTGGGGCAGCAGCAAGAACAAAGGGATGCCGTCGTCCAAGCGAC AAAACAAGAAGAAGAAGCACAACGGGCAGATGACGGTTTTGGTTACGTCA CTACAGCCGCCCGCCCCCTCAGCGAGTGCCGATCGCAGGCGAGATACGGG TCCGGACCGGATATGGTCAGGATGGGGAAGGAGTACACGGCGGGCGAGCT CCTGCAGATCGTGCCTCAAGTCTTTGGGGTCCGTCCTGCAGCCGGGTCGC AGGAGCTGTGACTCGACCGACGCTGCTTAAAAGTCATCACGGATTTCAAT CTACGGATGGAGATGAAAATGTGTTTAGAACATGGACAGACAACCCGTTC GAGATAGTGCCACAGGCGAAATGGGGGTGTTGTGAAGTCTTCGCAGGCTG TGAGGGAAAAAATTTTGTTGCCCTCAACACGCCATCCTATGACCGGGTCG TTGGAGCTGTTGACTCGAAAAAGCGTAAATTTGATCACGGGTTTCTATCT ACGGATGGATAGAGATGAGAGGTGTATTTGTGAACTCGCAGACAACCCGT TCGAGATAGTTAGTGCCACTGCTGTAGTTAAAGGGATGTGTTGCGTTCGC AGTCTGCGAGGAAGAAAAATTATACTTCTTGCACACCACCCTACTGCCGG GTCGCAGGAGCTGTAGCTCGAAAAACGGTTGAATAAGTATCACGTGTGTT TCTATCTGTGGGTAGAGGAGGAAACGTATTTACAACATATACATACCATC ACTGAAATAATGCCCGTTCAAGGTACACCCAGCAGTGGTCGAAGGGGTGC ATTGTGAAGTCTTCGCTGTCAGGGAGGAAGAGAGTTTTGTTTTCCTACAG TACACGTTTGTGGGGATTCTGTGTCTGGGAGGGGGGAAGTGGCCCGGCGT TGAATACACCCCGGCCTGTGCATATGTAGTAGGGGGACAAGGGTAGATAG GATCATGCGAGTGTTTTTATGTCTTGATTTCGCGATGTTTTTTGCTTGCT GAAATAGGCCTCGCTTGTCGGGCAGGGGCGGTGGGCACCTTGTATCGATC CCCTTTTTAGATCGTGGCTGGCTGAGGGAGACGATATTTTACGCCTGATA CAGTAGCAGTAGGGTCACATGCACGAAGTGGGGTCACCGATGTCGAATAC AAACATGTACAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10615:987..4401-

>mRNA_Ecto-sp9_F_contig10615.561.1 ID=mRNA_Ecto-sp9_F_contig10615.561.1|Name=mRNA_Ecto-sp9_F_contig10615.561.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10615:987..4401- (Ectocarpus species9 EcSCA_722f female)
ATGGAGCCCCGGTTTCTGAGCATGACACCCGACACGGGTCTGGTGGACTT
GACCGCCGAGGAAACGGGACGGTTCGTCCGGACTCTCGCAAGATGGAGCC
CCGGTTTCTGAGCATGACACCCGACACGGGTCTGGTGGACTTGACCGCCG
AGGAAACGGGACGGTTCGTCCGGACTCTCGCAAGACATCAAGCGAGCGTT
GAAGGCAAGAGCGATCTCGAAAGCGCGGCGTTCTTGTTGGTGACAGGCGT
GTGGGCTCCGGGGGGCTTGATTGAGAGTCCCGTGCTCTACACCAAAGAGG
ACGGAACCAAGACATCAAGCGAGCGTTGAAGGCAAGAGCGATCTCGAAAG
CGCGGCGTTCTTGTTGGTGACAGGCGTGTGGGCTCCGGGGGGCTTGATTG
AGAGTCCCGTGCTCTACACCAAAGAGGACGGAACCAAGGTGACAGACTAC
CCGCGCTCGTTGGCGCTTTGGGCCGGCACAACGGACGGCGCCCGCCTCGA
CGACGACGCCGCCGAGCGCCAACAGTACTGGGCGTCCTTTCGGCAGGCCA
TCCGGCAAGCCGAACACCGCCTGGGGCAGCAGCAAGAACAAAGGGATGCC
GTCGTCCAAGCGACAAAACAAGAAGAAGAAGCACAACGGGCAGATGACGG
TTTTGGTTACGTCACTACAGCCGCCCGCCCCCTCAGCGAGTGCCGATCGC
AGGCGAGATACGGGTCCGGACCGGATATGGTCAGGATGGGGAAGGAGTAC
ACGGCGGGCGAGCTCCTGCAGATCGTGCCTCAAGTCTTTGGGGTCCGTCC
TGCAGCCGGGTCGCAGGAGCTGTGAGTGACAGACTACCCGCGCTCGTTGG
CGCTTTGGGCCGGCACAACGGACGGCGCCCGCCTCGACGACGACGCCGCC
GAGCGCCAACAGTACTGGGCGTCCTTTCGGCAGGCCATCCGGCAAGCCGA
ACACCGCCTGGGGCAGCAGCAAGAACAAAGGGATGCCGTCGTCCAAGCGA
CAAAACAAGAAGAAGAAGCACAACGGGCAGATGACGGTTTTGGTTACGTC
ACTACAGCCGCCCGCCCCCTCAGCGAGTGCCGATCGCAGGCGAGATACGG
GTCCGGACCGGATATGGTCAGGATGGGGAAGGAGTACACGGCGGGCGAGC
TCCTGCAGATCGTGCCTCAAGTCTTTGGGGTCCGTCCTGCAGCCGGGTCG
CAGGAGCTGTGA
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