mRNA_Ecto-sp9_F_contig10615.561.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM90_ECTSI) HSP 1 Score: 513 bits (1320), Expect = 6.940e-177 Identity = 270/323 (83.59%), Postives = 274/323 (84.83%), Query Frame = 1
Query: 19 RHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLA-----------------------------------------RHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAERQQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 864
R DYH+GREDESKAL VGNALVKGYKAFLDVKQKGWRE+VEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTL RHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDD AERQQYWASFRQAIRQAEHRLGQQQEQRDA VQAT+QEEEAQRADDGFG VTTAARP+SECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL
Sbjct: 22 RGLADYHAGREDESKALFVGNALVKGYKAFLDVKQKGWREYVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLVSVVVVEVVVVVRRFSWTTHEPKSRHSDACCCRFQSCFVPPPRHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDDAERQQYWASFRQAIRQAEHRLGQQQEQRDAFVQATEQEEEAQRADDGFGDVTTAARPVSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 344
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN6_9PHAE) HSP 1 Score: 336 bits (862), Expect = 5.020e-110 Identity = 177/194 (91.24%), Postives = 182/194 (93.81%), Query Frame = 1
Query: 283 MTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAERQQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 864
MTPDTGLVDLTAEETGRF RTLARHQASVEGKSDLESAAFLLVTGVWAPG LIESPVLYTK DGT+VTDYPRSLALWAGTTDGARL DD AERQQY S RQAIRQAEHRLGQQQE++DA+VQAT EEEAQRAD+G G VTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL
Sbjct: 1 MTPDTGLVDLTAEETGRFARTLARHQASVEGKSDLESAAFLLVTGVWAPGSLIESPVLYTKGDGTQVTDYPRSLALWAGTTDGARLADDNAERQQYSESLRQAIRQAEHRLGQQQERKDALVQAT--EEEAQRADNGSGDVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQVFGVRPAAGSQEL 192
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7B1_FISSO) HSP 1 Score: 205 bits (522), Expect = 1.520e-58 Identity = 108/210 (51.43%), Postives = 135/210 (64.29%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVW-APGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGAR--LDDDAAER----------QQYWASFRQA 591
QDGF R +DYH G++D A+ +G ALV+GYKAFLDV Q GWR+++EEPG PL+N V PSGC EHAN Y IY +DSRQV+ L EPRFLS+TPDTG+VDL AEET VR L +GKSDLE A LVT VW + SP + EDGT +T++P SLALWA +D R L ++ A++ Q+YW R+A
Sbjct: 39 QDGFPERSKMDYHHGQDDAVPAVFLGKALVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPSGCYEHANEYWIYLIDSRQVMAVLNNEPRFLSITPDTGMVDLRAEETSPVVRALLEQMIQQQGKSDLEQVAIPLVTAVWFQKESHVPSPPIRIHEDGTYITNFPESLALWANVSDADRTALQEECADQTCSAEALQRVQRYWDGIRRA 248
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G4_FISSO) HSP 1 Score: 206 bits (525), Expect = 3.160e-58 Identity = 117/290 (40.34%), Postives = 163/290 (56.21%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVW-APGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGAR---LDDDAAER----------QQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGELLQIVPQV 828
QDGF R +DYH G++D AL +G LV+GYKAFLDV Q GWR+++EEPG PL+N V P+GC EHAN Y IY +D+RQV+ L EPRFLS+TPDTG+VDL A ET VR L + +GKSD E A LVT VW + SP + +DGT++T++P SLALWA +D R + +D +++ Q+YW R+A+R AE L E + D G P C+ + R+G G D R+ +++ ++ +++ V
Sbjct: 39 QDGFPERSKMDYHHGQDDAVPALFLGKGLVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPTGCYEHANEYWIYLIDARQVMAVLNNEPRFLSITPDTGMVDLQAGETTPVVRALFTNIIQQQGKSDFERVAIPLVTAVWFQKESHVPSPPIRIHDDGTQITNFPESLALWANVSDADRTALVQEDCSDQTCSAEALQRVQRYWDGIRRAVRHAEQSLA-----------------ELKEVDYG---------PPFSCQKKVRFGVGNDTARINDPFSSEQMTELLQSV 302
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1X2_PHATC) HSP 1 Score: 196 bits (499), Expect = 3.070e-54 Identity = 121/295 (41.02%), Postives = 153/295 (51.86%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARL---------------------DDDAAER-----QQYWASFRQAIRQAEHRLGQQQEQRDAVVQATKQEEEAQRADDGFGYVTTAARPLSECRSQARYGSGPDMVRMGKEYTAGEL 807
QDGF LDYHSG++DE +A+ VG ALV+G KA+LDV Q GWR++ EPG PL+N VVV SGC EHAN Y IYAVDSRQVL L EPRFLS+TPDTGLVDLT ET + V+ LA+ Q +GK + +F +V W + SP + DGT +T++P SLALWA D R+ + +A+ R ++YW R A+R AE AD V A P C AR G D R+ ++A EL
Sbjct: 36 QDGFPDHVKLDYHSGQDDEVRAVFVGRALVRGTKAYLDVMQDGWRQYTSEPGQPLINSVVVVSGCHEHANQYWIYAVDSRQVLAVLNNEPRFLSITPDTGLVDLTVAETDKAVKVLAQSQIQKQGKRNTTHVSFPIVVATWYHESFLPSPPMRHLPDGTAITNFPASLALWAKVNDADRVTGCDYTPTDSSSSIGSNNTVEECEASSRTLAAQRRYWDGIRSAVRAAE-------------------------ADRPSRDVWRANGPPFACERLARLGVDADTARINYSFSAEEL 305
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1J3_PHATC) HSP 1 Score: 174 bits (441), Expect = 2.130e-46 Identity = 100/203 (49.26%), Postives = 125/203 (61.58%), Query Frame = 1
Query: 1 QDGFAARHWLDY-HSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAERQQYWASFRQAIRQAE 606
QDGF RH L+Y H + + A VG ALV GYKA+LDVK KG+RE+ E P + N VV+P+GCA HANIY ++ V + +LN L EPRFLS+TPDTGLVDL A+ET VR +AR + K D A LVTGVW +ESP +Y + DGTKVT + LA+WAG +D DA WA+ IRQ+E
Sbjct: 38 QDGFELRHRLNYRHPQTQMDYPAQFVGTALVPGYKAYLDVKDKGFREYREANPPTVPNAVVMPTGCAAHANIYHVFFVPTPVLLNVLAGEPRFLSITPDTGLVDLQADETSDTVRRVARSVIKAQHKRDDSRVAIPLVTGVWFHDTFVESPPVYVR-DGTKVTSFDGGLAVWAGVEREDLVDADATA----WANVHTKIRQSE 235
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1H8DWD8_9PROT) HSP 1 Score: 170 bits (431), Expect = 5.310e-45 Identity = 94/204 (46.08%), Postives = 129/204 (63.24%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLES---AAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGARLDDDAAERQQYWASFRQAIRQA 603
++GF R LD+ E KA+ +G AL++G+KA LD+K GWRE+ EP VNP ++ +G ANIY+IY VD RQ++ ALL EPRFLSMTPDT LVD AEET V++L +Q +GK+ + + AAFL V VW + SP+LY K+DGT+VTD+P SLA +AG +D R +D A Y + A+++A
Sbjct: 73 EEGFPLRKNLDFIEDSETV-KAVFLGKALIRGFKAHLDIKSAGWREYRAEPAINPVNPAMIATGDRNDANIYSIYGVDRRQLVTALLNEPRFLSMTPDTALVDRNAEETYETVKSLITNQILNDGKASVTNKNEAAFLTVVSVWHSRHFVPSPILYIKKDGTRVTDFPNSLAAFAGISDQLRTEDPEA----YHVAVEAAVKKA 271
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC9_9STRA) HSP 1 Score: 164 bits (416), Expect = 3.010e-43 Identity = 100/195 (51.28%), Postives = 119/195 (61.03%), Query Frame = 1
Query: 64 ALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLV-NPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGG-LIESPVLYTKEDGTKVTDYPRSLALWAGT-TDGARL---DDDA--------AERQQYWASFRQAIRQAE 606
A LVG ALV+GYKA+LD+K G+RE+ EP PP V NPV++P+GC ANIY +Y V S+QVL+ L EPRFLS+TPDTGLVDL A ET VR LA Q G ++ + A LVTGVW +ESP Y EDGT+VT Y SLALW G TD + DDD A R Q W + IR AE
Sbjct: 14 ARLVGTALVRGYKAYLDIKPPGYREYKAEPYPPKVPNPVIIPTGCYHDANIYWLYLVKSQQVLHILAGEPRFLSITPDTGLVDLKAAETSDAVRQLALGQIQKHGFTNTDVFALPLVTGVWFDAASFVESPPAYLHEDGTRVTSYADSLALWTGVQTDDLLVVAEDDDGDGEGDTNMARRSQAWDAVYDKIRTAE 208
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DXW5_POLGL) HSP 1 Score: 141 bits (356), Expect = 1.710e-34 Identity = 83/183 (45.36%), Postives = 109/183 (59.56%), Query Frame = 1
Query: 1 QDGFAARHWLDYH---SGREDESKALLVGNALVKGYKAFLDVKQKGWREHVEEP-GPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWAGTTDGAR 537
QDGF R LDY SG E A +G AL +G KA+ D+K RE+V G VNP +V +GC EHAN+YA+Y + L ALL EPR+LSM+PD +DL AEET ++ L + S +GK++ E A L V V+ +E+PVLYTK DGT+VT++ LA AGT+D R
Sbjct: 34 QDGFPLRKNLDYTDPCSGAVAE--ATFLGWALCRGVKAYFDIKDPSCREYVPAAEGAARVNPAMVATGCWEHANVYAVYLAHEKAALKALLHEPRYLSMSPDMAQMDLKAEETSDNLKRLFKAAISEKGKAETERVALLTVVSVFKGPSFVENPVLYTKADGTQVTNFHDGLAKLAGTSDAER 214
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Match: Uncharacterized (protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPM2_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.260e-32 Identity = 79/181 (43.65%), Postives = 104/181 (57.46%), Query Frame = 1
Query: 1 QDGFAARHWLDYHSGREDESK--ALLVGNALVKGYKAFLDVKQKGWREHVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRF--VRTLA-----RHQASVEGKSDLESAAFLLVTGVWAPGGLIESPVLYTKEDGTKVTDYPRSLALWA 516
++GF R LDY +D S A +G ALV+GYK+FLD+K WRE+ E VNP +VP+GC EHAN YAIYAVDSRQ +NAL EPRFLS+ D GL DLTA + F ++ L ++ S S L AFL VT W + + V+ DG +TD+ S+ +W+
Sbjct: 56 EEGFELRRNLDYRPSDDDASSVNATFLGKALVRGYKSFLDIKNPTWREYKGEKELKTVNPAIVPTGCEEHANRYAIYAVDSRQAINALAGEPRFLSIAADMGLADLTAADDLTFPDIKKLVGAFANSNRLSGVEHSKLNRVAFLTVTSTWLKSTFVPNGVIRQDSDGI-ITDFAESIGIWS 235 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10615.561.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10615.561.1 >prot_Ecto-sp9_F_contig10615.561.1 ID=prot_Ecto-sp9_F_contig10615.561.1|Name=mRNA_Ecto-sp9_F_contig10615.561.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=202bp MEPRFLSMTPDTGLVDLTAEETGRFVRTLARHQASVEGKSDLESAAFLLVback to top mRNA from alignment at Ecto-sp9_F_contig10615:987..4401- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10615.561.1 ID=mRNA_Ecto-sp9_F_contig10615.561.1|Name=mRNA_Ecto-sp9_F_contig10615.561.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3415bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10615:987..4401- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10615:987..4401- >mRNA_Ecto-sp9_F_contig10615.561.1 ID=mRNA_Ecto-sp9_F_contig10615.561.1|Name=mRNA_Ecto-sp9_F_contig10615.561.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10615:987..4401- (Ectocarpus species9 EcSCA_722f female)back to top |