mRNA_Ecto-sp9_F_contig1061.555.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: Superoxide (dismutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI17_ECTSI) HSP 1 Score: 142 bits (359), Expect = 1.420e-40 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ
Sbjct: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 71
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: Superoxide (dismutase n=2 Tax=Phytobacter massiliensis TaxID=1485952 RepID=A0A6N3G5D2_9ENTR) HSP 1 Score: 105 bits (262), Expect = 5.630e-26 Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
MS LP LP+AKDALAPHISAET+EYHYGKHH AYVT LN I SELEGK+L+EI+++A GGVFNNAAQ
Sbjct: 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQAYVTNLNNLIK-GSELEGKTLEEIIRSADGGVFNNAAQ 70
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: Superoxide (dismutase n=2 Tax=Myxococcales TaxID=29 RepID=A0A356T2V4_9DELT) HSP 1 Score: 104 bits (260), Expect = 1.070e-25 Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
M+ LPELP+AKDALAPHIS ET+E+HYGKHH YV KLN A+ ++ L+GKSL++++KT GGVFNNAAQ
Sbjct: 1 MAFTLPELPYAKDALAPHISKETLEFHYGKHHQGYVNKLNKAVEDDASLQGKSLEDLIKTQKGGVFNNAAQ 71
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: Superoxide (dismutase n=1 Tax=Thalassocella blandensis TaxID=2584524 RepID=A0A509DU20_9HYPH) HSP 1 Score: 104 bits (260), Expect = 1.120e-25 Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
M+ LPELP+AKDALAPHIS ET+E+HYGKHH YVTKLN + +E EGKSL+E++KT+SGGVFNNAAQ
Sbjct: 1 MAFELPELPYAKDALAPHISEETLEFHYGKHHQTYVTKLNGLVP-GTEFEGKSLEEVVKTSSGGVFNNAAQ 70
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: Superoxide (dismutase [Fe] (Fragment) n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2A4TWX2_9GAMM) HSP 1 Score: 102 bits (253), Expect = 1.360e-25 Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
MS LP LP+AKDAL PHIS ETIEYHYGKHH +YV KLNA + EL+ SL+E++KTA+GGVFNNAAQ
Sbjct: 1 MSFELPALPYAKDALEPHISKETIEYHYGKHHQSYVNKLNAILEKQIELQSVSLEELIKTATGGVFNNAAQ 71
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: superoxide (dismutase [Fe] n=4 Tax=Gilvimarinus TaxID=940550 RepID=UPI0003799294) HSP 1 Score: 104 bits (259), Expect = 1.590e-25 Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
M+ LPELP+AKDALAPHIS ET+E+HYGKHH YV KLNAA+ +E EGKSL+E++K++SGGVFNNAAQ
Sbjct: 1 MAFELPELPYAKDALAPHISEETLEFHYGKHHKTYVDKLNAAVP-GTEFEGKSLEEVIKSSSGGVFNNAAQ 70
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: superoxide (dismutase [Fe] n=1 Tax=Agarilytica rhodophyticola TaxID=1737490 RepID=UPI000B34793F) HSP 1 Score: 104 bits (259), Expect = 1.590e-25 Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
M+ LPELP+AKDALAPHISAET+++HYGKHH YVTKLN + +E EGK+L+E++KT+SGGVFNNAAQ
Sbjct: 1 MAFELPELPYAKDALAPHISAETLDFHYGKHHQTYVTKLNGLVP-GTEFEGKTLEEVVKTSSGGVFNNAAQ 70
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: Superoxide (dismutase n=1 Tax=Salmonella enterica I TaxID=59201 RepID=A0A379WU81_SALET) HSP 1 Score: 101 bits (251), Expect = 1.780e-25 Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
MS LP LP+AKDALAPHISAET+EYHYGKHH YVT LN I + LEGK L+EI++ + GG+FNNAAQ
Sbjct: 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIQRHGVLEGKLLEEIVRASEGGIFNNAAQ 71
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: Superoxide (dismutase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5GYH9_9DELT) HSP 1 Score: 103 bits (258), Expect = 2.190e-25 Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
MS LPELP+AKDAL PHISAETIEYHYGKHHAAYV LN ++ + EGKSL+E+++T+SGG+FNNAAQ
Sbjct: 1 MSYQLPELPYAKDALQPHISAETIEYHYGKHHAAYVANLNRLVA-GTAFEGKSLEEVVRTSSGGIFNNAAQ 70
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Match: Superoxide (dismutase n=1 Tax=Pseudoteredinibacter isoporae TaxID=570281 RepID=A0A7X0JRI0_9GAMM) HSP 1 Score: 103 bits (258), Expect = 2.240e-25 Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 1
Query: 1 MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQ 213
MSI LP LP+A+DALAPHISAET+EYHYGKHH YV KLN I SE EGKSL++I+KT+ GGVFNNAAQ
Sbjct: 1 MSIELPALPYAQDALAPHISAETLEYHYGKHHQTYVDKLNGLIP-GSEFEGKSLEDIVKTSEGGVFNNAAQ 70 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1061.555.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1061.555.1 >prot_Ecto-sp9_F_contig1061.555.1 ID=prot_Ecto-sp9_F_contig1061.555.1|Name=mRNA_Ecto-sp9_F_contig1061.555.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=129bp MSIVLPELPWAKDALAPHISAETIEYHYGKHHAAYVTKLNAAISTNSELEback to top mRNA from alignment at Ecto-sp9_F_contig1061:3147..6692+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1061.555.1 ID=mRNA_Ecto-sp9_F_contig1061.555.1|Name=mRNA_Ecto-sp9_F_contig1061.555.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1061:3147..6692+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1061:3147..6692+ >mRNA_Ecto-sp9_F_contig1061.555.1 ID=mRNA_Ecto-sp9_F_contig1061.555.1|Name=mRNA_Ecto-sp9_F_contig1061.555.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1061:3147..6692+ (Ectocarpus species9 EcSCA_722f female)back to top |