mRNA_Ecto-sp9_F_contig10604.552.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 264 bits (675), Expect = 3.160e-85 Identity = 233/241 (96.68%), Postives = 234/241 (97.10%), Query Frame = 1
Query: 43 GGGDGAADLWRGGGLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYGNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGGHRRVAEWIVAN 765
GGGDGA DLWRG GLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWG RPA TSWVT+DSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGC WNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRY NVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRG HRRVAEWIVAN
Sbjct: 41 GGGDGATDLWRGSGLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYDNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGSHRRVAEWIVAN 281
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI) HSP 1 Score: 104 bits (259), Expect = 6.170e-23 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 97 DNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLT 375
+N D+L ++ FVA++ FLFF PV R WR AWG RP T T D + +QL+ F+ GL R PELCAAIARLG+++LL AR +GC W T
Sbjct: 11 NNPDILGCLISFVADESFLFFGPVCRDWRAAWGNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI) HSP 1 Score: 104 bits (259), Expect = 2.900e-22 Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 100 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVW 363
N+D++ + +FV +KQFLFFA VSR+WR+AWG R TSWVT ++ QL+YSF GL RD + C AR GNL+LLR A GC W
Sbjct: 22 NMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPW 109
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.200e-20 Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 103 VDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 366
VD++ ++ FV + Q+LFFA VSR WR+ WG+RP T +T D+SV QL SFE GL R +C +A LG L+LLR AR GC WN
Sbjct: 7 VDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT-AAVCETVAGLGRLDLLRRARAMGCQWN 93
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.410e-20 Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 100 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 366
N ++L + +FV + QFLFFAPV++ WR AW +RP T+ VT D++ SQL++SFE GLP+++ LCAA+ARLG L LL A G+GC N
Sbjct: 112 NRNILLCLAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCPMN 199
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 5.040e-20 Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 103 VDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 366
VD++ ++ FV + Q+LFFA VSR WR+ WG+RP T +T D+SVSQL SFE GL R +C +A LG L+LLR AR GC WN
Sbjct: 9 VDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRT-AAVCETVAGLGRLDLLRRARAMGCPWN 95
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 6.430e-19 Identity = 46/93 (49.46%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 88 ILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 366
++ NV LL + FV + Q LFFA VSR WR+ WG+RP T +T D+SV QL SFE GL R +C +A LG L+LL+ AR GC WN
Sbjct: 20 LVTANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT-AAVCETVAGLGRLDLLQRARAMGCPWN 111
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 3.020e-18 Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 106 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLT 375
D+ +V FV +QFLFFA V RAW+EAWG+RP T VT+D++V+QL +F+ GL ++C ++A+LG L+LL+ AR GC WN +T
Sbjct: 10 DVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLI-ADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 1.460e-13 Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 124 VRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGS-GCVWNGLTFSEAA 390
+ FV +Q+LFFA VSR WR+AW RP T VT D+ V QL SFE GL R R +C IA LG L+LL SAR C W+ T S A+
Sbjct: 1 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAR-RSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYAS 89
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 8.350e-13 Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 130 FVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRD--RPELCAAIARLGNLELLRSARGSGCVWNGLT 375
FV + Q+LF APV +A+R AWG R T V D+SV QL Y E GLP + +C A AR G L+LL+ A+GS C W T
Sbjct: 7 FVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQGSACGWTPAT 90 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10604.552.1 >prot_Ecto-sp9_F_contig10604.552.1 ID=prot_Ecto-sp9_F_contig10604.552.1|Name=mRNA_Ecto-sp9_F_contig10604.552.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=256bp MQAFRNSNKDTDDDGGGDGAADLWRGGGLILADNVDLLRSIVRFVAEKQFback to top mRNA from alignment at Ecto-sp9_F_contig10604:2519..3286- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10604.552.1 ID=mRNA_Ecto-sp9_F_contig10604.552.1|Name=mRNA_Ecto-sp9_F_contig10604.552.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10604:2519..3286- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10604:2519..3286- >mRNA_Ecto-sp9_F_contig10604.552.1 ID=mRNA_Ecto-sp9_F_contig10604.552.1|Name=mRNA_Ecto-sp9_F_contig10604.552.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10604:2519..3286- (Ectocarpus species9 EcSCA_722f female)back to top |