mRNA_Ecto-sp9_F_contig10604.552.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10604.552.1
Unique NamemRNA_Ecto-sp9_F_contig10604.552.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 3.160e-85
Identity = 233/241 (96.68%), Postives = 234/241 (97.10%), Query Frame = 1
Query:   43 GGGDGAADLWRGGGLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYGNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGGHRRVAEWIVAN 765
            GGGDGA DLWRG GLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWG RPA TSWVT+DSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGC WNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRY NVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRG HRRVAEWIVAN
Sbjct:   41 GGGDGATDLWRGSGLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYDNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGSHRRVAEWIVAN 281          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 6.170e-23
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   97 DNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLT 375
            +N D+L  ++ FVA++ FLFF PV R WR AWG RP  T   T D + +QL+  F+ GL R  PELCAAIARLG+++LL  AR +GC W   T
Sbjct:   11 NNPDILGCLISFVADESFLFFGPVCRDWRAAWGNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.900e-22
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  100 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVW 363
            N+D++  + +FV +KQFLFFA VSR+WR+AWG R   TSWVT  ++  QL+YSF  GL RD  + C   AR GNL+LLR A   GC W
Sbjct:   22 NMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPW 109          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-20
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  103 VDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 366
            VD++ ++  FV + Q+LFFA VSR WR+ WG+RP  T  +T D+SV QL  SFE GL R    +C  +A LG L+LLR AR  GC WN
Sbjct:    7 VDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT-AAVCETVAGLGRLDLLRRARAMGCQWN 93          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.410e-20
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query:  100 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 366
            N ++L  + +FV + QFLFFAPV++ WR AW +RP  T+ VT D++ SQL++SFE GLP+++  LCAA+ARLG L LL  A G+GC  N
Sbjct:  112 NRNILLCLAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCPMN 199          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 5.040e-20
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  103 VDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 366
            VD++ ++  FV + Q+LFFA VSR WR+ WG+RP  T  +T D+SVSQL  SFE GL R    +C  +A LG L+LLR AR  GC WN
Sbjct:    9 VDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRT-AAVCETVAGLGRLDLLRRARAMGCPWN 95          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.430e-19
Identity = 46/93 (49.46%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   88 ILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 366
            ++  NV LL  +  FV + Q LFFA VSR WR+ WG+RP  T  +T D+SV QL  SFE GL R    +C  +A LG L+LL+ AR  GC WN
Sbjct:   20 LVTANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT-AAVCETVAGLGRLDLLQRARAMGCPWN 111          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.020e-18
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  106 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLT 375
            D+   +V FV  +QFLFFA V RAW+EAWG+RP  T  VT+D++V+QL  +F+ GL     ++C ++A+LG L+LL+ AR  GC WN +T
Sbjct:   10 DVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLI-ADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.460e-13
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  124 VRFVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGS-GCVWNGLTFSEAA 390
            + FV  +Q+LFFA VSR WR+AW  RP  T  VT D+ V QL  SFE GL R R  +C  IA LG L+LL SAR    C W+  T S A+
Sbjct:    1 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAR-RSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYAS 89          
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.350e-13
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  130 FVAEKQFLFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRD--RPELCAAIARLGNLELLRSARGSGCVWNGLT 375
            FV + Q+LF APV +A+R AWG R   T  V  D+SV QL Y  E GLP    +  +C A AR G L+LL+ A+GS C W   T
Sbjct:    7 FVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQGSACGWTPAT 90          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10604.552.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Uncharacterized3.160e-8596.68protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized6.170e-2351.61protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77... [more]
Uncharacterized2.900e-2253.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.200e-2051.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.410e-2052.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.040e-2052.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.430e-1949.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.020e-1848.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.460e-1351.11protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.350e-1347.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10604contigEcto-sp9_F_contig10604:2519..3286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue4.8e-12
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-13_004050.1
Exons1
Model size768
Cds size768
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928279.028826-CDS-Ecto-sp9_F_contig10604:2518..32861622928279.028826-CDS-Ecto-sp9_F_contig10604:2518..3286Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10604 2519..3286 -
1692277818.670828-CDS-Ecto-sp9_F_contig10604:2518..32861692277818.670828-CDS-Ecto-sp9_F_contig10604:2518..3286Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10604 2519..3286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10604.552.1prot_Ecto-sp9_F_contig10604.552.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10604 2519..3286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10604.552.1

>prot_Ecto-sp9_F_contig10604.552.1 ID=prot_Ecto-sp9_F_contig10604.552.1|Name=mRNA_Ecto-sp9_F_contig10604.552.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=256bp
MQAFRNSNKDTDDDGGGDGAADLWRGGGLILADNVDLLRSIVRFVAEKQF
LFFAPVSRAWREAWGRRPAATSWVTQDSSVSQLRYSFERGLPRDRPELCA
AIARLGNLELLRSARGSGCVWNGLTFSEAARRGDLAFLQWLKSSGCRWDK
FSAIAAAGGGHLHVLKWLRKSGVGWDDDEWTCHMAAAGGHVHVLRWAIQN
GCRYGNVTCWSAAHQGHLEALKYLRKIGCGWDRRRCFDAAVRGGHRRVAE
WIVAN*
back to top

mRNA from alignment at Ecto-sp9_F_contig10604:2519..3286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10604.552.1 ID=mRNA_Ecto-sp9_F_contig10604.552.1|Name=mRNA_Ecto-sp9_F_contig10604.552.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10604:2519..3286- (Ectocarpus species9 EcSCA_722f female)
ATGCAGGCGTTCAGGAACAGCAACAAGGACACCGACGACGACGGGGGTGG CGACGGGGCTGCGGACCTCTGGCGGGGGGGCGGTCTCATCCTGGCCGACA ACGTGGACCTCCTGCGGAGCATCGTCCGCTTCGTGGCCGAGAAGCAGTTC CTCTTCTTCGCGCCGGTCTCCAGGGCCTGGAGGGAGGCCTGGGGCCGCCG CCCGGCGGCGACGAGCTGGGTCACCCAAGACTCGTCCGTGTCCCAGCTGA GGTACAGCTTCGAGCGGGGGCTCCCGCGGGACCGGCCGGAGCTGTGCGCC GCCATCGCGCGGCTCGGCAACCTCGAGCTCCTGCGGTCGGCGAGGGGCAG CGGGTGCGTCTGGAACGGGCTGACGTTCTCGGAGGCGGCGCGGCGGGGGG ACCTGGCGTTCCTCCAGTGGCTCAAGTCCAGCGGGTGCAGGTGGGACAAG TTCTCGGCCATCGCTGCGGCGGGGGGAGGGCACCTCCACGTGCTCAAGTG GCTGAGGAAGAGCGGCGTCGGGTGGGACGACGACGAGTGGACCTGCCACA TGGCGGCGGCGGGGGGCCACGTGCACGTCCTGCGGTGGGCCATACAGAAC GGGTGCCGGTACGGCAACGTCACCTGCTGGTCGGCTGCGCACCAGGGCCA CCTCGAGGCCCTCAAGTACCTGAGAAAGATCGGCTGCGGCTGGGACAGGC GGCGGTGCTTCGACGCCGCGGTCCGCGGGGGCCACCGGCGCGTGGCGGAG TGGATCGTGGCGAACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10604:2519..3286-

>mRNA_Ecto-sp9_F_contig10604.552.1 ID=mRNA_Ecto-sp9_F_contig10604.552.1|Name=mRNA_Ecto-sp9_F_contig10604.552.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10604:2519..3286- (Ectocarpus species9 EcSCA_722f female)
ATGCAGGCGTTCAGGAACAGCAACAAGGACACCGACGACGACGGGGGTGG
CGACGGGGCTGCGGACCTCTGGCGGGGGGGCGGTCTCATCCTGGCCGACA
ACGTGGACCTCCTGCGGAGCATCGTCCGCTTCGTGGCCGAGAAGCAGTTC
CTCTTCTTCGCGCCGGTCTCCAGGGCCTGGAGGGAGGCCTGGGGCCGCCG
CCCGGCGGCGACGAGCTGGGTCACCCAAGACTCGTCCGTGTCCCAGCTGA
GGTACAGCTTCGAGCGGGGGCTCCCGCGGGACCGGCCGGAGCTGTGCGCC
GCCATCGCGCGGCTCGGCAACCTCGAGCTCCTGCGGTCGGCGAGGGGCAG
CGGGTGCGTCTGGAACGGGCTGACGTTCTCGGAGGCGGCGCGGCGGGGGG
ACCTGGCGTTCCTCCAGTGGCTCAAGTCCAGCGGGTGCAGGTGGGACAAG
TTCTCGGCCATCGCTGCGGCGGGGGGAGGGCACCTCCACGTGCTCAAGTG
GCTGAGGAAGAGCGGCGTCGGGTGGGACGACGACGAGTGGACCTGCCACA
TGGCGGCGGCGGGGGGCCACGTGCACGTCCTGCGGTGGGCCATACAGAAC
GGGTGCCGGTACGGCAACGTCACCTGCTGGTCGGCTGCGCACCAGGGCCA
CCTCGAGGCCCTCAAGTACCTGAGAAAGATCGGCTGCGGCTGGGACAGGC
GGCGGTGCTTCGACGCCGCGGTCCGCGGGGGCCACCGGCGCGTGGCGGAG
TGGATCGTGGCGAACTGAATGCAGGCGTTCAGGAACAGCAACAAGGACAC
CGACGACGACGGGGGTGGCGACGGGGCTGCGGACCTCTGGCGGGGGGGCG
GTCTCATCCTGGCCGACAACGTGGACCTCCTGCGGAGCATCGTCCGCTTC
GTGGCCGAGAAGCAGTTCCTCTTCTTCGCGCCGGTCTCCAGGGCCTGGAG
GGAGGCCTGGGGCCGCCGCCCGGCGGCGACGAGCTGGGTCACCCAAGACT
CGTCCGTGTCCCAGCTGAGGTACAGCTTCGAGCGGGGGCTCCCGCGGGAC
CGGCCGGAGCTGTGCGCCGCCATCGCGCGGCTCGGCAACCTCGAGCTCCT
GCGGTCGGCGAGGGGCAGCGGGTGCGTCTGGAACGGGCTGACGTTCTCGG
AGGCGGCGCGGCGGGGGGACCTGGCGTTCCTCCAGTGGCTCAAGTCCAGC
GGGTGCAGGTGGGACAAGTTCTCGGCCATCGCTGCGGCGGGGGGAGGGCA
CCTCCACGTGCTCAAGTGGCTGAGGAAGAGCGGCGTCGGGTGGGACGACG
ACGAGTGGACCTGCCACATGGCGGCGGCGGGGGGCCACGTGCACGTCCTG
CGGTGGGCCATACAGAACGGGTGCCGGTACGGCAACGTCACCTGCTGGTC
GGCTGCGCACCAGGGCCACCTCGAGGCCCTCAAGTACCTGAGAAAGATCG
GCTGCGGCTGGGACAGGCGGCGGTGCTTCGACGCCGCGGTCCGCGGGGGC
CACCGGCGCGTGGCGGAGTGGATCGTGGCGAACTGA
back to top