mRNA_Ecto-sp9_F_contig10602.551.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10602.551.1
Unique NamemRNA_Ecto-sp9_F_contig10602.551.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10602.551.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.580e-49
Identity = 107/147 (72.79%), Postives = 113/147 (76.87%), Query Frame = -2 
Query:    3 LPAAAA-PMANGAENFGQEGGESRHPTARTSDDDRSGAGLGEPATIAAALVPHGGAQHGRAPGNGNGSGTHEMQEELRREPERPQAGRRKXXXXXXXXXXXXXXXXXXXXXXATPSGVKETLTGYEDGRRGRTATERETRVVRADPD 440
            LPAAAA PMANGAE+FGQEGGE+RHPTA TSDDDR GAGLGEPATIA ALVPHG A +GRAPG+GNGSG HEMQEELRREPERPQAGRRK                       T SGVKET TG EDGRRGRTAT+RETRVVRA P+
Sbjct:   72 LPAAAAAPMANGAEHFGQEGGENRHPTAITSDDDRRGAGLGEPATIATALVPHGVAPNGRAPGDGNGSGAHEMQEELRREPERPQAGRRKRRKKASREGSAKAPQSKPTAV-TTLSGVKETHTGDEDGRRGRTATKRETRVVRASPE 217
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BLAST of mRNA_Ecto-sp9_F_contig10602.551.1 vs.
Match: SNF2 (helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.090e-7
Identity = 53/146 (36.30%), Postives = 57/146 (39.04%), Query Frame = -2 
Query:    3 LPAAAAPMANGAENFGQEGGESRHPTARTSDDDRSGAGLGEPATIAAALVPHGGAQHGRAPGNGNGSGTHEMQEELRREPERPQAGRRKXXXXXXXXXXXXXXXXXXXXXXATPSGVKETLTGYEDGRRGRTATERETRVVRADPD 440
            LPAAA  MANGA+NFGQEGG++RH   RTSDDDR GA                                                                               V  TLTG EDGRRGRTAT+RETRVVRA PD
Sbjct:  383 LPAAAL-MANGADNFGQEGGKNRHRIPRTSDDDRGGA-------------------------------------------------------------------------------VLATLTGDEDGRRGRTATKRETRVVRAGPD 448
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10602.551.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.580e-4972.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
SNF21.090e-736.30helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10602contigEcto-sp9_F_contig10602:3048..3488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size443
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928278.974417-CDS-Ecto-sp9_F_contig10602:3047..34881622928278.974417-CDS-Ecto-sp9_F_contig10602:3047..3488Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10602 3048..3488 +
1692277818.6621141-CDS-Ecto-sp9_F_contig10602:3047..34881692277818.6621141-CDS-Ecto-sp9_F_contig10602:3047..3488Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10602 3048..3488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10602.551.1prot_Ecto-sp9_F_contig10602.551.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10602 3048..3488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10602.551.1

>prot_Ecto-sp9_F_contig10602.551.1 ID=prot_Ecto-sp9_F_contig10602.551.1|Name=mRNA_Ecto-sp9_F_contig10602.551.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=147bp
WSGSARTTRVSRSVAVLPRRPSSYPVSVSFTPDGVAVVVVVLDWGAFADP
ARDAFFLLFLLPACGRSGSLRSSSCISCVPLPLPFPGARPCCAPPCGTRA
AAIVAGSPKPAPLRSSSLVLAVGWRLSPPSCPKFSAPLAIGAAAAGR
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mRNA from alignment at Ecto-sp9_F_contig10602:3048..3488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10602.551.1 ID=mRNA_Ecto-sp9_F_contig10602.551.1|Name=mRNA_Ecto-sp9_F_contig10602.551.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=441bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10602:3048..3488+ (Ectocarpus species9 EcSCA_722f female)
TGGTCAGGGTCCGCGCGAACAACGCGCGTCTCCCGCTCCGTCGCCGTCCT
TCCTCGGCGTCCGTCTTCATATCCCGTAAGCGTTTCCTTCACCCCCGACG
GGGTGGCGGTGGTTGTGGTGGTTTTGGATTGGGGAGCCTTCGCTGATCCC
GCACGTGACGCTTTCTTCCTCCTCTTTCTTCTGCCCGCCTGTGGGCGTTC
TGGTTCCCTCCGCAGCTCTTCCTGCATCTCGTGTGTCCCACTCCCATTGC
CATTCCCAGGAGCACGGCCATGTTGTGCCCCACCATGCGGCACCAGAGCA
GCAGCGATAGTAGCAGGCTCACCTAAACCAGCACCACTTCGGTCGTCGTC
GCTTGTTCTCGCTGTTGGGTGGCGACTCTCGCCTCCTTCTTGCCCGAAAT
TTTCGGCACCATTGGCCATAGGGGCGGCGGCGGCGGGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10602:3048..3488+

>mRNA_Ecto-sp9_F_contig10602.551.1 ID=mRNA_Ecto-sp9_F_contig10602.551.1|Name=mRNA_Ecto-sp9_F_contig10602.551.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10602:3048..3488+ (Ectocarpus species9 EcSCA_722f female)
TGGTCAGGGTCCGCGCGAACAACGCGCGTCTCCCGCTCCGTCGCCGTCCT
TCCTCGGCGTCCGTCTTCATATCCCGTAAGCGTTTCCTTCACCCCCGACG
GGGTGGCGGTGGTTGTGGTGGTTTTGGATTGGGGAGCCTTCGCTGATCCC
GCACGTGACGCTTTCTTCCTCCTCTTTCTTCTGCCCGCCTGTGGGCGTTC
TGGTTCCCTCCGCAGCTCTTCCTGCATCTCGTGTGTCCCACTCCCATTGC
CATTCCCAGGAGCACGGCCATGTTGTGCCCCACCATGCGGCACCAGAGCA
GCAGCGATAGTAGCAGGCTCACCTAAACCAGCACCACTTCGGTCGTCGTC
GCTTGTTCTCGCTGTTGGGTGGCGACTCTCGCCTCCTTCTTGCCCGAAAT
TTTCGGCACCATTGGCCATAGGGGCGGCGGCGGCGGGGAGGTGGTCAGGG
TCCGCGCGAACAACGCGCGTCTCCCGCTCCGTCGCCGTCCTTCCTCGGCG
TCCGTCTTCATATCCCGTAAGCGTTTCCTTCACCCCCGACGGGGTGGCGG
TGGTTGTGGTGGTTTTGGATTGGGGAGCCTTCGCTGATCCCGCACGTGAC
GCTTTCTTCCTCCTCTTTCTTCTGCCCGCCTGTGGGCGTTCTGGTTCCCT
CCGCAGCTCTTCCTGCATCTCGTGTGTCCCACTCCCATTGCCATTCCCAG
GAGCACGGCCATGTTGTGCCCCACCATGCGGCACCAGAGCAGCAGCGATA
GTAGCAGGCTCACCTAAACCAGCACCACTTCGGTCGTCGTCGCTTGTTCT
CGCTGTTGGGTGGCGACTCTCGCCTCCTTCTTGCCCGAAATTTTCGGCAC
CATTGGCCATAGGGGCGGCGGCGGCGGGGAGG
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